RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 TRIOBPQ9H2D6 2365 aa22.64■■□□□ 1.21
PNKP-213ENST00000599543 RANBP2P49792 3224 aaKnown RBP22.64■■□□□ 1.21
PNKP-213ENST00000599543 PEX10O60683 326 aa22.63■■□□□ 1.21
PNKP-213ENST00000599543 CAPN2P17655 700 aa22.63■■□□□ 1.21
PNKP-213ENST00000599543 ATP5JP18859 108 aa22.63■■□□□ 1.21
PNKP-213ENST00000599543 ERVK-9P63128 1117 aa22.63■■□□□ 1.21
PNKP-213ENST00000599543 ERVK-24P63145 666 aa22.63■■□□□ 1.21
PNKP-213ENST00000599543 LCORLQ8N3X6 602 aa22.63■■□□□ 1.21
PNKP-213ENST00000599543 SOCS4Q8WXH5 440 aa22.63■■□□□ 1.21
PNKP-213ENST00000599543 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.63■■□□□ 1.213e-7■■■■■ 36.7
PNKP-213ENST00000599543 RBPJLQ9UBG7 517 aa22.63■■□□□ 1.21
PNKP-213ENST00000599543 USP17L15C9J2P7 530 aa22.62■■□□□ 1.21
PNKP-213ENST00000599543 USP17L13C9JLJ4 530 aa22.62■■□□□ 1.21
PNKP-213ENST00000599543 USP17L11C9JVI0 530 aa22.62■■□□□ 1.21
PNKP-213ENST00000599543 USP17L18D6R9N7 530 aa22.62■■□□□ 1.21
PNKP-213ENST00000599543 USP17L22D6RA61 530 aa22.62■■□□□ 1.21
PNKP-213ENST00000599543 USP17L17D6RBQ6 530 aa22.62■■□□□ 1.21
PNKP-213ENST00000599543 USP17L19D6RCP7 530 aa22.62■■□□□ 1.21
PNKP-213ENST00000599543 USP17L20D6RJB6 530 aa22.62■■□□□ 1.21
PNKP-213ENST00000599543 MAPK4P31152 587 aa22.62■■□□□ 1.21
PNKP-213ENST00000599543 USP17L24Q0WX57 530 aa22.62■■□□□ 1.21
PNKP-213ENST00000599543 NUDT12Q9BQG2 462 aa22.62■■□□□ 1.21
PNKP-213ENST00000599543 LRRCC1Q9C099 1032 aa22.62■■□□□ 1.21
PNKP-213ENST00000599543 KIAA1683Q9H0B3 1180 aa22.62■■□□□ 1.21
PNKP-213ENST00000599543 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.62■■□□□ 1.21
PNKP-213ENST00000599543 DCP1AQ9NPI6 582 aaPredicted RBP22.62■■□□□ 1.21
PNKP-213ENST00000599543 MPHOSPH10O00566 681 aaKnown RBP22.61■■□□□ 1.21
PNKP-213ENST00000599543 VCAM1P19320 739 aa22.61■■□□□ 1.21
PNKP-213ENST00000599543 ADD2P35612 726 aa22.61■■□□□ 1.21
PNKP-213ENST00000599543 GABPAQ06546 454 aa22.61■■□□□ 1.21
PNKP-213ENST00000599543 HAUS7Q99871 368 aa22.61■■□□□ 1.21
PNKP-213ENST00000599543 ARMT1Q9H993 441 aa22.61■■□□□ 1.21
PNKP-213ENST00000599543 CYP2B6P20813 491 aa22.6■■□□□ 1.21
PNKP-213ENST00000599543 IRX6P78412 446 aaPredicted RBP22.6■■□□□ 1.21
PNKP-213ENST00000599543 ACER1Q8TDN7 264 aa22.6■■□□□ 1.21
PNKP-213ENST00000599543 CWC22Q9HCG8 908 aaKnown RBP22.6■■□□□ 1.21
PNKP-213ENST00000599543 HMX1Q9NP08 348 aaPredicted RBP22.6■■□□□ 1.21
PNKP-213ENST00000599543 COLQQ9Y215 455 aaPredicted RBP22.6■■□□□ 1.21
PNKP-213ENST00000599543 MBD4O95243 580 aa22.59■■□□□ 1.21
PNKP-213ENST00000599543 EVX2Q03828 476 aa22.59■■□□□ 1.21
PNKP-213ENST00000599543 SEPT2Q15019 361 aa22.59■■□□□ 1.21
PNKP-213ENST00000599543 TRIB2Q92519 343 aa22.59■■□□□ 1.21
PNKP-213ENST00000599543 CRISPLD2Q9H0B8 497 aa22.59■■□□□ 1.21
PNKP-213ENST00000599543 PORCNQ9H237 461 aa22.59■■□□□ 1.21
PNKP-213ENST00000599543 PCDH10Q9P2E7 1040 aa22.59■■□□□ 1.21
PNKP-213ENST00000599543 SWAP70Q9UH65 585 aa22.59■■□□□ 1.21
PNKP-213ENST00000599543 RPTORQ8N122 1335 aa22.58■■□□□ 1.21
PNKP-213ENST00000599543 XRCC5P13010 732 aaKnown RBP22.58■■□□□ 1.21
PNKP-213ENST00000599543 GUCY1A2P33402 732 aa22.58■■□□□ 1.21
PNKP-213ENST00000599543 CCNA1P78396 465 aa22.58■■□□□ 1.21
PNKP-213ENST00000599543 TRIM32Q13049 653 aa22.58■■□□□ 1.21
PNKP-213ENST00000599543 Q3C1V9 767 aa22.58■■□□□ 1.21
PNKP-213ENST00000599543 CATSPERGQ6ZRH7 1159 aa22.58■■□□□ 1.21
PNKP-213ENST00000599543 GPR142Q7Z601 462 aa22.58■■□□□ 1.21
PNKP-213ENST00000599543 ATP8A2Q9NTI2 1148 aa22.58■■□□□ 1.21
PNKP-213ENST00000599543 RABGAP1Q9Y3P9 1069 aa22.58■■□□□ 1.21
PNKP-213ENST00000599543 NR2E3Q9Y5X4 410 aa22.58■■□□□ 1.21
PNKP-213ENST00000599543 SMARCA5O60264 1052 aaPredicted RBP22.57■■□□□ 1.2
PNKP-213ENST00000599543 CYP2D6P10635 497 aa22.57■■□□□ 1.2
PNKP-213ENST00000599543 SLFNL1Q499Z3 407 aa22.57■■□□□ 1.2
PNKP-213ENST00000599543 PLEKHH3Q7Z736 793 aa22.57■■□□□ 1.2
PNKP-213ENST00000599543 AMOTL1Q8IY63 956 aa22.57■■□□□ 1.2
PNKP-213ENST00000599543 TRMT44Q8IYL2 757 aaKnown RBP22.57■■□□□ 1.2
PNKP-213ENST00000599543 DDRGK1Q96HY6 314 aa22.57■■□□□ 1.2
PNKP-213ENST00000599543 PRKAB2O43741 272 aa22.56■■□□□ 1.2
PNKP-213ENST00000599543 ZKSCAN1P17029 563 aaPredicted RBP22.56■■□□□ 1.2
PNKP-213ENST00000599543 RGS2P41220 211 aa22.56■■□□□ 1.2
PNKP-213ENST00000599543 UBE3CQ15386 1083 aa22.56■■□□□ 1.2
PNKP-213ENST00000599543 ZSCAN25Q6NSZ9 544 aa22.56■■□□□ 1.2
PNKP-213ENST00000599543 POTEEQ6S8J3 1075 aa22.56■■□□□ 1.2
PNKP-213ENST00000599543 TMEM179Q6ZVK1 233 aa22.56■■□□□ 1.2
PNKP-213ENST00000599543 SLC44A5Q8NCS7 719 aa22.56■■□□□ 1.2
PNKP-213ENST00000599543 RPAP3Q9H6T3 665 aaPredicted RBP22.56■■□□□ 1.2
PNKP-213ENST00000599543 ALPK3Q96L96 1907 aa22.56■■□□□ 1.2
PNKP-213ENST00000599543 GLRX3O76003 335 aaKnown RBP22.55■■□□□ 1.2
PNKP-213ENST00000599543 PRKAR2AP13861 404 aaKnown RBP22.55■■□□□ 1.2
PNKP-213ENST00000599543 WDR78Q5VTH9 848 aa22.55■■□□□ 1.2
PNKP-213ENST00000599543 CHRDL2Q6WN34 429 aa22.55■■□□□ 1.2
PNKP-213ENST00000599543 LBX2Q6XYB7 198 aa22.55■■□□□ 1.2
PNKP-213ENST00000599543 ANKLE1Q8NAG6 615 aa22.55■■□□□ 1.2
PNKP-213ENST00000599543 PAWRQ96IZ0 340 aaKnown RBP22.55■■□□□ 1.2
PNKP-213ENST00000599543 APBA2Q99767 749 aa22.55■■□□□ 1.2
PNKP-213ENST00000599543 SZT2Q5T011 3432 aa22.54■■□□□ 1.2
PNKP-213ENST00000599543 EVI5O60447 810 aa22.54■■□□□ 1.2
PNKP-213ENST00000599543 CNMDO75829 334 aa22.54■■□□□ 1.2
PNKP-213ENST00000599543 MORN1Q5T089 497 aa22.54■■□□□ 1.2
PNKP-213ENST00000599543 NECAB2Q7Z6G3 386 aa22.54■■□□□ 1.2
PNKP-213ENST00000599543 EXOC6Q8TAG9 804 aa22.54■■□□□ 1.2
PNKP-213ENST00000599543 DYNLL2Q96FJ2 89 aa22.54■■□□□ 1.2
PNKP-213ENST00000599543 GPATCH3Q96I76 525 aa22.54■■□□□ 1.2
PNKP-213ENST00000599543 ECHDC1Q9NTX5 307 aa22.54■■□□□ 1.2
PNKP-213ENST00000599543 PCDHB15Q9Y5E8 787 aa22.54■■□□□ 1.2
PNKP-213ENST00000599543 SPDYE16A6NNV3 312 aaPredicted RBP22.53■■□□□ 1.2
PNKP-213ENST00000599543 CHGBP05060 677 aa22.53■■□□□ 1.2
PNKP-213ENST00000599543 FXR1P51114 621 aaKnown RBP eCLIP22.53■■□□□ 1.2
PNKP-213ENST00000599543 MAP3K21Q5TCX8 1036 aa22.53■■□□□ 1.2
PNKP-213ENST00000599543 DIS3LQ8TF46 1054 aaKnown RBP22.53■■□□□ 1.2
PNKP-213ENST00000599543 USP6NLQ92738 828 aa22.53■■□□□ 1.2
PNKP-213ENST00000599543 TANGO6Q9C0B7 1094 aa22.53■■□□□ 1.2
PNKP-213ENST00000599543 SLC4A4Q9Y6R1 1079 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms