RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 USP17L11C9JVI0 530 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 USP17L18D6R9N7 530 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 USP17L22D6RA61 530 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 USP17L17D6RBQ6 530 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 USP17L19D6RCP7 530 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 USP17L20D6RJB6 530 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 H0YGN5 161 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 CYP2B6P20813 491 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 ADD2P35612 726 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 USP17L24Q0WX57 530 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 C20orf194Q5TEA3 1177 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 DDRGK1Q96HY6 314 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 HAUS7Q99871 368 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 KIAA1683Q9H0B3 1180 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.83□□□□□ -0.52
VRK3-216ENST00000599342 ARMT1Q9H993 441 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 TXNRD2Q9NNW7 524 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 HMX1Q9NP08 348 aaPredicted RBP11.83□□□□□ -0.52
VRK3-216ENST00000599342 DCP1AQ9NPI6 582 aaPredicted RBP11.83□□□□□ -0.52
VRK3-216ENST00000599342 SWAP70Q9UH65 585 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 GJD2Q9UKL4 321 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 PEX10O60683 326 aa11.82□□□□□ -0.52
VRK3-216ENST00000599342 MBD4O95243 580 aa11.82□□□□□ -0.52
VRK3-216ENST00000599342 VCAM1P19320 739 aa11.82□□□□□ -0.52
VRK3-216ENST00000599342 CCNA1P78396 465 aa11.82□□□□□ -0.52
VRK3-216ENST00000599342 GABPAQ06546 454 aa11.82□□□□□ -0.52
VRK3-216ENST00000599342 ZSCAN25Q6NSZ9 544 aa11.82□□□□□ -0.52
VRK3-216ENST00000599342 UBE2Q1Q7Z7E8 422 aa11.82□□□□□ -0.52
VRK3-216ENST00000599342 ACER1Q8TDN7 264 aa11.82□□□□□ -0.52
VRK3-216ENST00000599342 GPATCH3Q96I76 525 aa11.82□□□□□ -0.52
VRK3-216ENST00000599342 ATP8A2Q9NTI2 1148 aa11.82□□□□□ -0.52
VRK3-216ENST00000599342 RBPJLQ9UBG7 517 aa11.82□□□□□ -0.52
VRK3-216ENST00000599342 RPTORQ8N122 1335 aa11.82□□□□□ -0.52
VRK3-216ENST00000599342 SMARCA5O60264 1052 aaPredicted RBP11.81□□□□□ -0.52
VRK3-216ENST00000599342 ZKSCAN1P17029 563 aaPredicted RBP11.81□□□□□ -0.52
VRK3-216ENST00000599342 RGS2P41220 211 aa11.81□□□□□ -0.52
VRK3-216ENST00000599342 SEPT2Q15019 361 aa11.81□□□□□ -0.52
VRK3-216ENST00000599342 UBE3CQ15386 1083 aa11.81□□□□□ -0.52
VRK3-216ENST00000599342 WDR78Q5VTH9 848 aa11.81□□□□□ -0.52
VRK3-216ENST00000599342 CATSPERGQ6ZRH7 1159 aa11.81□□□□□ -0.52
VRK3-216ENST00000599342 TMEM179Q6ZVK1 233 aa11.81□□□□□ -0.52
VRK3-216ENST00000599342 GPR142Q7Z601 462 aa11.81□□□□□ -0.52
VRK3-216ENST00000599342 PLEKHH3Q7Z736 793 aa11.81□□□□□ -0.52
VRK3-216ENST00000599342 TRMT44Q8IYL2 757 aaKnown RBP11.81□□□□□ -0.52
VRK3-216ENST00000599342 TRIB2Q92519 343 aa11.81□□□□□ -0.52
VRK3-216ENST00000599342 PORCNQ9H237 461 aa11.81□□□□□ -0.52
VRK3-216ENST00000599342 RPAP3Q9H6T3 665 aaPredicted RBP11.81□□□□□ -0.52
VRK3-216ENST00000599342 PCDH10Q9P2E7 1040 aa11.81□□□□□ -0.52
VRK3-216ENST00000599342 RABGAP1Q9Y3P9 1069 aa11.81□□□□□ -0.52
VRK3-216ENST00000599342 NR2E3Q9Y5X4 410 aa11.81□□□□□ -0.52
VRK3-216ENST00000599342 PRKAB2O43741 272 aa11.8□□□□□ -0.52
VRK3-216ENST00000599342 GLRX3O76003 335 aaKnown RBP11.8□□□□□ -0.52
VRK3-216ENST00000599342 CYP2D6P10635 497 aa11.8□□□□□ -0.52
VRK3-216ENST00000599342 XRCC5P13010 732 aaKnown RBP11.8□□□□□ -0.52
VRK3-216ENST00000599342 PRKAR2AP13861 404 aaKnown RBP11.8□□□□□ -0.52
VRK3-216ENST00000599342 GUCY1A2P33402 732 aa11.8□□□□□ -0.52
VRK3-216ENST00000599342 EVX2Q03828 476 aa11.8□□□□□ -0.52
VRK3-216ENST00000599342 TRIM32Q13049 653 aa11.8□□□□□ -0.52
VRK3-216ENST00000599342 Q3C1V9 767 aa11.8□□□□□ -0.52
VRK3-216ENST00000599342 SLFNL1Q499Z3 407 aa11.8□□□□□ -0.52
VRK3-216ENST00000599342 NECAB2Q7Z6G3 386 aa11.8□□□□□ -0.52
VRK3-216ENST00000599342 APBA2Q99767 749 aa11.8□□□□□ -0.52
VRK3-216ENST00000599342 CRISPLD2Q9H0B8 497 aa11.8□□□□□ -0.52
VRK3-216ENST00000599342 COLQQ9Y215 455 aaPredicted RBP11.8□□□□□ -0.52
VRK3-216ENST00000599342 IVNS1ABPQ9Y6Y0 642 aa11.8□□□□□ -0.52
VRK3-216ENST00000599342 EVI5O60447 810 aa11.79□□□□□ -0.52
VRK3-216ENST00000599342 CHRDL2Q6WN34 429 aa11.79□□□□□ -0.52
VRK3-216ENST00000599342 LBX2Q6XYB7 198 aa11.79□□□□□ -0.52
VRK3-216ENST00000599342 ANKLE1Q8NAG6 615 aa11.79□□□□□ -0.52
VRK3-216ENST00000599342 SLC44A5Q8NCS7 719 aa11.79□□□□□ -0.52
VRK3-216ENST00000599342 DYNLL2Q96FJ2 89 aa11.79□□□□□ -0.52
VRK3-216ENST00000599342 TANGO6Q9C0B7 1094 aa11.79□□□□□ -0.52
VRK3-216ENST00000599342 SH2D4AQ9H788 454 aa11.79□□□□□ -0.52
VRK3-216ENST00000599342 ARHGEF10LQ9HCE6 1279 aa11.79□□□□□ -0.52
VRK3-216ENST00000599342 ECHDC1Q9NTX5 307 aa11.79□□□□□ -0.52
VRK3-216ENST00000599342 SLC4A4Q9Y6R1 1079 aa11.79□□□□□ -0.52
VRK3-216ENST00000599342 DOCK3Q8IZD9 2030 aa11.79□□□□□ -0.52
VRK3-216ENST00000599342 SPDYE16A6NNV3 312 aaPredicted RBP11.78□□□□□ -0.52
VRK3-216ENST00000599342 USP17L12C9JPN9 530 aa11.78□□□□□ -0.52
VRK3-216ENST00000599342 USP17L21D6R901 530 aa11.78□□□□□ -0.52
VRK3-216ENST00000599342 CNMDO75829 334 aa11.78□□□□□ -0.52
VRK3-216ENST00000599342 ICA1Q05084 483 aa11.78□□□□□ -0.52
VRK3-216ENST00000599342 MAP2K5Q13163 448 aa11.78□□□□□ -0.52
VRK3-216ENST00000599342 MORN1Q5T089 497 aa11.78□□□□□ -0.52
VRK3-216ENST00000599342 C12orf60Q5U649 245 aa11.78□□□□□ -0.52
VRK3-216ENST00000599342 POTEEQ6S8J3 1075 aa11.78□□□□□ -0.52
VRK3-216ENST00000599342 LPAR1Q92633 364 aa11.78□□□□□ -0.52
VRK3-216ENST00000599342 PAWRQ96IZ0 340 aaKnown RBP11.78□□□□□ -0.52
VRK3-216ENST00000599342 CCDC17Q96LX7 622 aa11.78□□□□□ -0.52
VRK3-216ENST00000599342 PLXNB2O15031 1838 aa11.78□□□□□ -0.52
VRK3-216ENST00000599342 A0A1W2PRG0 241 aa11.77□□□□□ -0.53
VRK3-216ENST00000599342 CHGBP05060 677 aa11.77□□□□□ -0.53
VRK3-216ENST00000599342 AKR1B1P15121 316 aa11.77□□□□□ -0.53
VRK3-216ENST00000599342 CDK8P49336 464 aa11.77□□□□□ -0.53
VRK3-216ENST00000599342 COG2Q14746 738 aa11.77□□□□□ -0.53
VRK3-216ENST00000599342 MAP3K21Q5TCX8 1036 aa11.77□□□□□ -0.53
VRK3-216ENST00000599342 C16orf86Q6ZW13 317 aa11.77□□□□□ -0.53
VRK3-216ENST00000599342 DIS3LQ8TF46 1054 aaKnown RBP11.77□□□□□ -0.53
VRK3-216ENST00000599342 USP6NLQ92738 828 aa11.77□□□□□ -0.53
VRK3-216ENST00000599342 PUS7LQ9H0K6 701 aaKnown RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms