RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PHIPQ8WWQ0 1821 aa16.91■□□□□ 0.3
SHKBP1-217ENST00000598558 IGKV6D-41A0A0C4DH26 115 aa16.91■□□□□ 0.3
SHKBP1-217ENST00000598558 USP17L10C9JJH3 530 aa16.91■□□□□ 0.3
SHKBP1-217ENST00000598558 PDHXO00330 501 aa16.91■□□□□ 0.3
SHKBP1-217ENST00000598558 CA12O43570 354 aa16.91■□□□□ 0.3
SHKBP1-217ENST00000598558 TMEM179Q6ZVK1 233 aa16.91■□□□□ 0.3
SHKBP1-217ENST00000598558 ESYT1Q9BSJ8 1104 aa16.91■□□□□ 0.3
SHKBP1-217ENST00000598558 TBC1D2Q9BYX2 928 aa16.91■□□□□ 0.3
SHKBP1-217ENST00000598558 TAF6LQ9Y6J9 622 aa16.91■□□□□ 0.3
SHKBP1-217ENST00000598558 RAD50Q92878 1312 aa16.91■□□□□ 0.3
SHKBP1-217ENST00000598558 CAP1Q01518 475 aa16.9■□□□□ 0.3
SHKBP1-217ENST00000598558 ZYXQ15942 572 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-217ENST00000598558 FASTKD5Q7L8L6 764 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-217ENST00000598558 RUFY2Q8WXA3 655 aa16.9■□□□□ 0.3
SHKBP1-217ENST00000598558 GPR25O00155 361 aa16.89■□□□□ 0.29
SHKBP1-217ENST00000598558 ALDH1A1P00352 501 aa16.89■□□□□ 0.29
SHKBP1-217ENST00000598558 CYP2C8P10632 490 aa16.89■□□□□ 0.29
SHKBP1-217ENST00000598558 EEF2P13639 858 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-217ENST00000598558 TFAP4Q01664 338 aa16.89■□□□□ 0.29
SHKBP1-217ENST00000598558 TAF1CQ15572 869 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-217ENST00000598558 OTUD7BQ6GQQ9 843 aa16.89■□□□□ 0.29
SHKBP1-217ENST00000598558 ZNF444Q8N0Y2 327 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-217ENST00000598558 LSG1Q9H089 658 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-217ENST00000598558 KIAA1683Q9H0B3 1180 aa16.89■□□□□ 0.29
SHKBP1-217ENST00000598558 AGTPBP1Q9UPW5 1226 aa16.89■□□□□ 0.29
SHKBP1-217ENST00000598558 LAMB1P07942 1786 aa16.89■□□□□ 0.29
SHKBP1-217ENST00000598558 C19orf81C9J6K1 198 aa16.88■□□□□ 0.29
SHKBP1-217ENST00000598558 ORC4O43929 436 aa16.88■□□□□ 0.29
SHKBP1-217ENST00000598558 ICA1Q05084 483 aa16.88■□□□□ 0.29
SHKBP1-217ENST00000598558 PDE4BQ07343 736 aa16.88■□□□□ 0.29
SHKBP1-217ENST00000598558 POTEEQ6S8J3 1075 aa16.88■□□□□ 0.29
SHKBP1-217ENST00000598558 PROCA1Q8NCQ7 364 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-217ENST00000598558 NEDD1Q8NHV4 660 aa16.88■□□□□ 0.29
SHKBP1-217ENST00000598558 MAP4K1Q92918 833 aa16.88■□□□□ 0.29
SHKBP1-217ENST00000598558 IL17RBQ9NRM6 502 aa16.88■□□□□ 0.29
SHKBP1-217ENST00000598558 ADGRA2Q96PE1 1338 aa16.88■□□□□ 0.29
SHKBP1-217ENST00000598558 ZNF213O14771 459 aa16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 NMT2O60551 498 aa16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 SLC3A2P08195 630 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 AKNAD1Q5T1N1 836 aa16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 COL13A1Q5TAT6 717 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 USP17L2Q6R6M4 530 aa16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 ZNF296Q8WUU4 475 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 STAG1Q8WVM7 1258 aa16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 CEP95Q96GE4 821 aa16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 C12orf42Q96LP6 360 aa16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 KANSL2Q9H9L4 492 aa16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 ZCCHC17Q9NP64 241 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 TMX2Q9Y320 296 aa16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 NEDD4P46934 1319 aa16.87■□□□□ 0.29
SHKBP1-217ENST00000598558 ATAD5Q96QE3 1844 aa16.86■□□□□ 0.29
SHKBP1-217ENST00000598558 PEX10O60683 326 aa16.86■□□□□ 0.29
SHKBP1-217ENST00000598558 CDC45O75419 566 aa16.86■□□□□ 0.29
SHKBP1-217ENST00000598558 ATP2B2Q01814 1243 aa16.86■□□□□ 0.29
SHKBP1-217ENST00000598558 RRP12Q5JTH9 1297 aaKnown RBP16.86■□□□□ 0.29
SHKBP1-217ENST00000598558 C17orf99Q6UX52 265 aa16.86■□□□□ 0.29
SHKBP1-217ENST00000598558 ZFYVE28Q9HCC9 887 aa16.86■□□□□ 0.29
SHKBP1-217ENST00000598558 PRDM10Q9NQV6 1147 aa16.86■□□□□ 0.29
SHKBP1-217ENST00000598558 MTMR4Q9NYA4 1195 aa16.86■□□□□ 0.29
SHKBP1-217ENST00000598558 CPA4Q9UI42 421 aa16.86■□□□□ 0.29
SHKBP1-217ENST00000598558 RANBP6O60518 1105 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 TLR2O60603 784 aa16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 CYP21A2P08686 494 aa16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 VCAM1P19320 739 aa16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 HOXA7P31268 230 aaPredicted RBP16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 P2RX7Q99572 595 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 FEZ1Q99689 392 aa16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 ASCC2Q9H1I8 757 aaPredicted RBP16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 ZNF287Q9HBT7 754 aa16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 TMOD4Q9NZQ9 345 aa16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 NYAP2Q9P242 653 aa16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 CLIP2Q9UDT6 1046 aa16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 CTNNA3Q9UI47 895 aa16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 SLC45A1Q9Y2W3 748 aa16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 RBM8AQ9Y5S9 174 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-217ENST00000598558 TSPY3P0CV98 308 aa16.84■□□□□ 0.29
SHKBP1-217ENST00000598558 TSPY8P0CW00 308 aa16.84■□□□□ 0.29
SHKBP1-217ENST00000598558 COL9A3Q14050 684 aaPredicted RBP16.84■□□□□ 0.29
SHKBP1-217ENST00000598558 NOM1Q5C9Z4 860 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-217ENST00000598558 MFSD6Q6ZSS7 791 aa16.84■□□□□ 0.29
SHKBP1-217ENST00000598558 STOX1Q6ZVD7 989 aa16.84■□□□□ 0.29
SHKBP1-217ENST00000598558 SPICE1Q8N0Z3 855 aa16.84■□□□□ 0.29
SHKBP1-217ENST00000598558 MKL1Q969V6 931 aa16.84■□□□□ 0.29
SHKBP1-217ENST00000598558 VCPKMTQ9H867 229 aa16.84■□□□□ 0.29
SHKBP1-217ENST00000598558 U3KPZ7 1027 aaPredicted RBP16.84■□□□□ 0.29
SHKBP1-217ENST00000598558 PLIN4Q96Q06 1357 aa16.84■□□□□ 0.29
SHKBP1-217ENST00000598558 TSPY2A6NKD2 308 aa16.83■□□□□ 0.28
SHKBP1-217ENST00000598558 BCRP11274 1271 aa16.83■□□□□ 0.28
SHKBP1-217ENST00000598558 CTGFP29279 349 aa16.83■□□□□ 0.28
SHKBP1-217ENST00000598558 NOVP48745 357 aa16.83■□□□□ 0.28
SHKBP1-217ENST00000598558 USP14P54578 494 aa16.83■□□□□ 0.28
SHKBP1-217ENST00000598558 IMMTQ16891 758 aaKnown RBP16.83■□□□□ 0.28
SHKBP1-217ENST00000598558 CATSPERGQ6ZRH7 1159 aa16.83■□□□□ 0.28
SHKBP1-217ENST00000598558 ARHGEF10LQ9HCE6 1279 aa16.83■□□□□ 0.28
SHKBP1-217ENST00000598558 TOMM22Q9NS69 142 aa16.83■□□□□ 0.28
SHKBP1-217ENST00000598558 B4E1Z4 1266 aa16.82■□□□□ 0.28
SHKBP1-217ENST00000598558 FKTNO75072 461 aa16.82■□□□□ 0.28
SHKBP1-217ENST00000598558 NECTIN1Q15223 517 aa16.82■□□□□ 0.28
SHKBP1-217ENST00000598558 RCSD1Q6JBY9 416 aa16.82■□□□□ 0.28
SHKBP1-217ENST00000598558 LRRC47Q8N1G4 583 aaKnown RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms