RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	VCAM1	P19320	739 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	MAPK4	P31152	587 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	MNX1	P50219	401 aa	Predicted RBP	12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	PDE3A	Q14432	1141 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	TTF1	Q15361	905 aa	Predicted RBP	12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	CCL14	Q16627	93 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	SLFNL1	Q499Z3	407 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	MAP3K21	Q5TCX8	1036 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	GPR142	Q7Z601	462 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	NECAB2	Q7Z6G3	386 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	CCAR1	Q8IX12	1150 aa	Known RBP	12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	CLASRP	Q8N2M8	674 aa	Known RBP	12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	USP6NL	Q92738	828 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	KIF1BP	Q96EK5	621 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	KIAA1683	Q9H0B3	1180 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	ZNF532	Q9HCE3	1301 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	TCRBV5S4A2T	A0A5A2	114 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	USP17L15	C9J2P7	530 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	USP17L13	C9JLJ4	530 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	USP17L11	C9JVI0	530 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	USP17L18	D6R9N7	530 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	USP17L22	D6RA61	530 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	USP17L17	D6RBQ6	530 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	USP17L19	D6RCP7	530 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	USP17L20	D6RJB6	530 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	IFIT2	P09913	472 aa	Known RBP	12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	CYP2D6	P10635	497 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	XRCC5	P13010	732 aa	Known RBP	12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	ZKSCAN1	P17029	563 aa	Predicted RBP	12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	CAPN2	P17655	700 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	GUCY1A2	P33402	732 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	GABPA	Q06546	454 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	USP17L24	Q0WX57	530 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	SEPT2	Q15019	361 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	MORN1	Q5T089	497 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	TMED8	Q6PL24	325 aa	Predicted RBP	12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	PLEKHH3	Q7Z736	793 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	C7orf61	Q8IZ16	206 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	LCORL	Q8N3X6	602 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	GTF3C2	Q8WUA4	911 aa	Predicted RBP	12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	SDR42E1	Q8WUS8	393 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	CRNKL1	Q9BZJ0	848 aa	Known RBP	12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	ZBTB40	Q9NUA8	1239 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	MCM9	Q9NXL9	1143 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	LAMA3	Q16787	3333 aa		12.77	□□□□□ -0.37
LSM4-205	ENST00000597776	MPHOSPH10	O00566	681 aa	Known RBP	12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	HMMR	O75330	724 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	MS4A1	P11836	297 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	CCND3	P30281	292 aa	Predicted RBP	12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	RGS2	P41220	211 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	USP14	P54578	494 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	CACNB2	Q08289	660 aa	Predicted RBP	12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	CATSPERG	Q6ZRH7	1159 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	RPAP2	Q8IXW5	612 aa	Predicted RBP	12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	ANKLE1	Q8NAG6	615 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	SLC44A5	Q8NCS7	719 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	APBA2	Q99767	749 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	RPAP3	Q9H6T3	665 aa	Predicted RBP	12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	ARMT1	Q9H993	441 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	CWC22	Q9HCG8	908 aa	Known RBP	12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	CABP5	Q9NP86	173 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	BTBD7	Q9P203	1132 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	STAP2	Q9UGK3	403 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	OGDHL	Q9ULD0	1010 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	DDX19B	Q9UMR2	479 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	RABGAP1	Q9Y3P9	1069 aa		12.76	□□□□□ -0.37
LSM4-205	ENST00000597776	CHGB	P05060	677 aa		12.75	□□□□□ -0.37
LSM4-205	ENST00000597776	WDR78	Q5VTH9	848 aa		12.75	□□□□□ -0.37
LSM4-205	ENST00000597776	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	12.75	□□□□□ -0.37
LSM4-205	ENST00000597776	NBPF3	Q9H094	633 aa		12.75	□□□□□ -0.37
LSM4-205	ENST00000597776	BOLA2	Q9H3K6	86 aa		12.75	□□□□□ -0.37
LSM4-205	ENST00000597776	C11orf49	Q9H6J7	331 aa		12.75	□□□□□ -0.37
LSM4-205	ENST00000597776	DCP1A	Q9NPI6	582 aa	Predicted RBP	12.75	□□□□□ -0.37
LSM4-205	ENST00000597776	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	12.75	□□□□□ -0.37
LSM4-205	ENST00000597776	PFAS	O15067	1338 aa		12.74	□□□□□ -0.37
LSM4-205	ENST00000597776		A0A1W2PRG0	241 aa		12.74	□□□□□ -0.37
LSM4-205	ENST00000597776	SPDYE16	A6NNV3	312 aa	Predicted RBP	12.74	□□□□□ -0.37
LSM4-205	ENST00000597776	SMIM22	K7EJ46	135 aa		12.74	□□□□□ -0.37
LSM4-205	ENST00000597776	PRKAB2	O43741	272 aa		12.74	□□□□□ -0.37
LSM4-205	ENST00000597776	RAB11FIP3	O75154	756 aa		12.74	□□□□□ -0.37
LSM4-205	ENST00000597776	MBD4	O95243	580 aa		12.74	□□□□□ -0.37
LSM4-205	ENST00000597776	CCNA1	P78396	465 aa		12.74	□□□□□ -0.37
LSM4-205	ENST00000597776	MAP2K5	Q13163	448 aa		12.74	□□□□□ -0.37
LSM4-205	ENST00000597776	CLEC10A	Q8IUN9	316 aa		12.74	□□□□□ -0.37
LSM4-205	ENST00000597776	TRMT44	Q8IYL2	757 aa	Known RBP	12.74	□□□□□ -0.37
LSM4-205	ENST00000597776	DYNLL2	Q96FJ2	89 aa		12.74	□□□□□ -0.37
LSM4-205	ENST00000597776	PAG1	Q9NWQ8	432 aa		12.74	□□□□□ -0.37
LSM4-205	ENST00000597776	FLRT1	Q9NZU1	646 aa		12.74	□□□□□ -0.37
LSM4-205	ENST00000597776	CYP2D7	A0A087X1C5	515 aa		12.73	□□□□□ -0.37
LSM4-205	ENST00000597776	SOX1	O00570	391 aa	Predicted RBP	12.73	□□□□□ -0.37
LSM4-205	ENST00000597776	SYN1	P17600	705 aa		12.73	□□□□□ -0.37
LSM4-205	ENST00000597776	PTPRE	P23469	700 aa		12.73	□□□□□ -0.37
LSM4-205	ENST00000597776	ADD2	P35612	726 aa		12.73	□□□□□ -0.37
LSM4-205	ENST00000597776	KIAA1755	Q5JYT7	1200 aa		12.73	□□□□□ -0.37
LSM4-205	ENST00000597776	C20orf194	Q5TEA3	1177 aa		12.73	□□□□□ -0.37
LSM4-205	ENST00000597776	LHX8	Q68G74	356 aa		12.73	□□□□□ -0.37
LSM4-205	ENST00000597776	LBX2	Q6XYB7	198 aa		12.73	□□□□□ -0.37
LSM4-205	ENST00000597776	RCAN3	Q9UKA8	241 aa		12.73	□□□□□ -0.37
LSM4-205	ENST00000597776	SLC15A5	A6NIM6	579 aa		12.72	□□□□□ -0.37
LSM4-205	ENST00000597776	GLRX3	O76003	335 aa	Known RBP	12.72	□□□□□ -0.37

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