RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ADM5C9JUS6 153 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 SCRN1Q12765 414 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 PPP4R3BQ5MIZ7 849 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 PRAMEF18Q5VWM3 479 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 TMEM179Q6ZVK1 233 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 KRT26Q7Z3Y9 468 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 CATIPQ7Z7H3 387 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 RAB11FIP4Q86YS3 637 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 INTS4Q96HW7 963 aaKnown RBP17.16■□□□□ 0.34
VRK3-212ENST00000596814 KAT14Q9H8E8 782 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 MTMR4Q9NYA4 1195 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 HPS5Q9UPZ3 1129 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 SSC5DA1L4H1 1573 aa17.15■□□□□ 0.34
VRK3-212ENST00000596814 NID2Q14112 1375 aa17.15■□□□□ 0.34
VRK3-212ENST00000596814 VEGFAP15692 232 aaPredicted RBP17.15■□□□□ 0.34
VRK3-212ENST00000596814 NOVP48745 357 aa17.15■□□□□ 0.34
VRK3-212ENST00000596814 METAP2P50579 478 aaKnown RBP eCLIP17.15■□□□□ 0.34
VRK3-212ENST00000596814 RCAN1P53805 252 aa17.15■□□□□ 0.34
VRK3-212ENST00000596814 CCT2P78371 535 aaKnown RBP17.15■□□□□ 0.34
VRK3-212ENST00000596814 RRP1BQ14684 758 aaKnown RBP17.15■□□□□ 0.34
VRK3-212ENST00000596814 SHROOM1Q2M3G4 852 aaPredicted RBP17.15■□□□□ 0.34
VRK3-212ENST00000596814 MYL10Q9BUA6 226 aa17.15■□□□□ 0.34
VRK3-212ENST00000596814 RRAGCQ9HB90 399 aa17.15■□□□□ 0.34
VRK3-212ENST00000596814 CABP5Q9NP86 173 aa17.15■□□□□ 0.34
VRK3-212ENST00000596814 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.15■□□□□ 0.34
VRK3-212ENST00000596814 GOLGA8AA7E2F4 631 aa17.14■□□□□ 0.33
VRK3-212ENST00000596814 DDAH1O94760 285 aa17.14■□□□□ 0.33
VRK3-212ENST00000596814 TTLL1O95922 423 aa17.14■□□□□ 0.33
VRK3-212ENST00000596814 GH2P01242 217 aa17.14■□□□□ 0.33
VRK3-212ENST00000596814 RXRAP19793 462 aa17.14■□□□□ 0.33
VRK3-212ENST00000596814 SUPT20HL1Q3ZLR7 823 aa17.14■□□□□ 0.33
VRK3-212ENST00000596814 CLEC10AQ8IUN9 316 aa17.14■□□□□ 0.33
VRK3-212ENST00000596814 DOCK1Q14185 1865 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 TOP1P11387 765 aaKnown RBP17.13■□□□□ 0.33
VRK3-212ENST00000596814 PNMA1Q8ND90 353 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 NUP133Q8WUM0 1156 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 CHMP4CQ96CF2 233 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 TMEM47Q9BQJ4 181 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 ZNF341Q9BYN7 854 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 KANSL2Q9H9L4 492 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 NCOA5Q9HCD5 579 aaKnown RBP17.13■□□□□ 0.33
VRK3-212ENST00000596814 ZBTB21Q9ULJ3 1066 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 PHF20L1A8MW92 1017 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 CALM1P0DP23 149 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 CALM2P0DP24 149 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 CALM3P0DP25 149 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 CAP2P40123 477 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 ICA1Q05084 483 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 SEPT2Q15019 361 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 RAB3GAP1Q15042 981 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 CCDC144CPQ8IYA2 1237 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 CLEC11AQ9Y240 323 aa17.13■□□□□ 0.33
VRK3-212ENST00000596814 DHX16O60231 1041 aaKnown RBP17.12■□□□□ 0.33
VRK3-212ENST00000596814 GUCY1A2P33402 732 aa17.12■□□□□ 0.33
VRK3-212ENST00000596814 JAG1P78504 1218 aa17.12■□□□□ 0.33
VRK3-212ENST00000596814 TROAPQ12815 778 aa17.12■□□□□ 0.33
VRK3-212ENST00000596814 RTN1Q16799 776 aa17.12■□□□□ 0.33
VRK3-212ENST00000596814 USP48Q86UV5 1035 aa17.12■□□□□ 0.33
VRK3-212ENST00000596814 ZNF526Q8TF50 670 aaPredicted RBP17.12■□□□□ 0.33
VRK3-212ENST00000596814 POTEIP0CG38 1075 aa17.11■□□□□ 0.33
VRK3-212ENST00000596814 POTEJP0CG39 1038 aa17.11■□□□□ 0.33
VRK3-212ENST00000596814 ATP2B2Q01814 1243 aa17.11■□□□□ 0.33
VRK3-212ENST00000596814 CDC37L1Q7L3B6 337 aa17.11■□□□□ 0.33
VRK3-212ENST00000596814 LRRC47Q8N1G4 583 aaKnown RBP17.11■□□□□ 0.33
VRK3-212ENST00000596814 NMRK2Q9NPI5 230 aa17.11■□□□□ 0.33
VRK3-212ENST00000596814 NYAP2Q9P242 653 aa17.11■□□□□ 0.33
VRK3-212ENST00000596814 CLIP2Q9UDT6 1046 aa17.11■□□□□ 0.33
VRK3-212ENST00000596814 SMC3Q9UQE7 1217 aa17.11■□□□□ 0.33
VRK3-212ENST00000596814 CPLX1O14810 134 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 ASNSP08243 561 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 DLK2Q6UY11 383 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 CDCA5Q96FF9 252 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 LLPHQ9BRT6 129 aaKnown RBP17.1■□□□□ 0.33
VRK3-212ENST00000596814 GLIS2Q9BZE0 524 aaPredicted RBP17.1■□□□□ 0.33
VRK3-212ENST00000596814 CWC22Q9HCG8 908 aaKnown RBP17.1■□□□□ 0.33
VRK3-212ENST00000596814 GINM1Q9NU53 330 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 CCDC196A0A1B0GTZ2 297 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 CTNND1O60716 968 aaKnown RBP17.1■□□□□ 0.33
VRK3-212ENST00000596814 EEF2P13639 858 aaKnown RBP17.1■□□□□ 0.33
VRK3-212ENST00000596814 CDC27P30260 824 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 NF2P35240 595 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 PPP2R5BQ15173 497 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 CPLX2Q6PUV4 134 aaKnown RBP17.1■□□□□ 0.33
VRK3-212ENST00000596814 LDHDQ86WU2 507 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 FANCBQ8NB91 859 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 NSUN7Q8NE18 718 aaKnown RBP17.1■□□□□ 0.33
VRK3-212ENST00000596814 CTCFLQ8NI51 663 aaPredicted RBP17.1■□□□□ 0.33
VRK3-212ENST00000596814 WRNIP1Q96S55 665 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 MAP3K14Q99558 947 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 RBM28Q9NW13 759 aaKnown RBP17.1■□□□□ 0.33
VRK3-212ENST00000596814 ZNF112Q9UJU3 913 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 PAPPA2Q9BXP8 1791 aa17.1■□□□□ 0.33
VRK3-212ENST00000596814 OTOFQ9HC10 1997 aa17.09■□□□□ 0.33
VRK3-212ENST00000596814 CTDNEP1O95476 244 aa17.09■□□□□ 0.33
VRK3-212ENST00000596814 ADD1P35611 737 aaKnown RBP17.09■□□□□ 0.33
VRK3-212ENST00000596814 FAM217BQ9NTX9 383 aaPredicted RBP17.09■□□□□ 0.33
VRK3-212ENST00000596814 PTPDC1A2A3K4 754 aa17.08■□□□□ 0.32
VRK3-212ENST00000596814 JAK2O60674 1132 aa17.08■□□□□ 0.32
VRK3-212ENST00000596814 CDKL5O76039 1030 aa17.08■□□□□ 0.32
VRK3-212ENST00000596814 GJB2P29033 226 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms