RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 CEP95Q96GE4 821 aa17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 LLPHQ9BRT6 129 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 TAF1DQ9H5J8 278 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 NCOA5Q9HCD5 579 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 FAM217BQ9NTX9 383 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 MTMR4Q9NYA4 1195 aa17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 CIZ1Q9ULV3 898 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 GOLGA8AA7E2F4 631 aa17.24■□□□□ 0.35
SHKBP1-211ENST00000595945 GUCY1A2P33402 732 aa17.24■□□□□ 0.35
SHKBP1-211ENST00000595945 METAP2P50579 478 aaKnown RBP eCLIP17.24■□□□□ 0.35
SHKBP1-211ENST00000595945 JAG1P78504 1218 aa17.24■□□□□ 0.35
SHKBP1-211ENST00000595945 TROAPQ12815 778 aa17.24■□□□□ 0.35
SHKBP1-211ENST00000595945 SYNE3Q6ZMZ3 975 aa17.24■□□□□ 0.35
SHKBP1-211ENST00000595945 ZC3H15Q8WU90 426 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-211ENST00000595945 TMEM47Q9BQJ4 181 aa17.24■□□□□ 0.35
SHKBP1-211ENST00000595945 MYL10Q9BUA6 226 aa17.24■□□□□ 0.35
SHKBP1-211ENST00000595945 NAP1L2Q9ULW6 460 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-211ENST00000595945 PAPPA2Q9BXP8 1791 aa17.24■□□□□ 0.35
SHKBP1-211ENST00000595945 SSC5DA1L4H1 1573 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 IQCA1LA6NCM1 817 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 PHF20L1A8MW92 1017 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 TOP1P11387 765 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 CDC27P30260 824 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 PPP2R5BQ15173 497 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 NTRK3Q16288 839 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 ABCB5Q2M3G0 1257 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 SHROOM1Q2M3G4 852 aaPredicted RBP17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 PPP4R3BQ5MIZ7 849 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 NBPF12Q5TAG4 269 aaPredicted RBP17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 TMEM179Q6ZVK1 233 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 CATIPQ7Z7H3 387 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 MICU3Q86XE3 530 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 MAP3K14Q99558 947 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 KAT14Q9H8E8 782 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 SMC3Q9UQE7 1217 aa17.23■□□□□ 0.35
SHKBP1-211ENST00000595945 JAK2O60674 1132 aa17.22■□□□□ 0.35
SHKBP1-211ENST00000595945 GDF11O95390 407 aa17.22■□□□□ 0.35
SHKBP1-211ENST00000595945 CALM1P0DP23 149 aa17.22■□□□□ 0.35
SHKBP1-211ENST00000595945 CALM2P0DP24 149 aa17.22■□□□□ 0.35
SHKBP1-211ENST00000595945 CALM3P0DP25 149 aa17.22■□□□□ 0.35
SHKBP1-211ENST00000595945 RXRAP19793 462 aa17.22■□□□□ 0.35
SHKBP1-211ENST00000595945 GJB2P29033 226 aa17.22■□□□□ 0.35
SHKBP1-211ENST00000595945 RTN1Q16799 776 aa17.22■□□□□ 0.35
SHKBP1-211ENST00000595945 MIGA2Q7L4E1 593 aa17.22■□□□□ 0.35
SHKBP1-211ENST00000595945 FANCBQ8NB91 859 aa17.22■□□□□ 0.35
SHKBP1-211ENST00000595945 PNMA1Q8ND90 353 aa17.22■□□□□ 0.35
SHKBP1-211ENST00000595945 CHMP5Q9NZZ3 219 aa17.22■□□□□ 0.35
SHKBP1-211ENST00000595945 NYAP2Q9P242 653 aa17.22■□□□□ 0.35
SHKBP1-211ENST00000595945 PHIPQ8WWQ0 1821 aa17.21■□□□□ 0.35
SHKBP1-211ENST00000595945 OTOFQ9HC10 1997 aa17.21■□□□□ 0.35
SHKBP1-211ENST00000595945 MPHOSPH10O00566 681 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-211ENST00000595945 DHX16O60231 1041 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-211ENST00000595945 ADD1P35611 737 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-211ENST00000595945 CAP2P40123 477 aa17.21■□□□□ 0.35
SHKBP1-211ENST00000595945 CLEC10AQ8IUN9 316 aa17.21■□□□□ 0.35
SHKBP1-211ENST00000595945 SIAH1Q8IUQ4 282 aa17.21■□□□□ 0.35
SHKBP1-211ENST00000595945 MKL1Q969V6 931 aa17.21■□□□□ 0.35
SHKBP1-211ENST00000595945 HOOK2Q96ED9 719 aa17.21■□□□□ 0.35
SHKBP1-211ENST00000595945 KANSL2Q9H9L4 492 aa17.21■□□□□ 0.35
SHKBP1-211ENST00000595945 ZNF112Q9UJU3 913 aa17.21■□□□□ 0.35
SHKBP1-211ENST00000595945 STX8Q9UNK0 236 aa17.21■□□□□ 0.35
SHKBP1-211ENST00000595945 PTPDC1A2A3K4 754 aa17.2■□□□□ 0.34
SHKBP1-211ENST00000595945 DTNBO60941 627 aa17.2■□□□□ 0.34
SHKBP1-211ENST00000595945 TTLL1O95922 423 aa17.2■□□□□ 0.34
SHKBP1-211ENST00000595945 GH2P01242 217 aa17.2■□□□□ 0.34
SHKBP1-211ENST00000595945 GRM4Q14833 912 aa17.2■□□□□ 0.34
SHKBP1-211ENST00000595945 SEPT2Q15019 361 aa17.2■□□□□ 0.34
SHKBP1-211ENST00000595945 DCAF15Q66K64 600 aa17.2■□□□□ 0.34
SHKBP1-211ENST00000595945 NUP133Q8WUM0 1156 aa17.2■□□□□ 0.34
SHKBP1-211ENST00000595945 DCPSQ96C86 337 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-211ENST00000595945 CABP5Q9NP86 173 aa17.2■□□□□ 0.34
SHKBP1-211ENST00000595945 GINM1Q9NU53 330 aa17.2■□□□□ 0.34
SHKBP1-211ENST00000595945 ZBTB21Q9ULJ3 1066 aa17.2■□□□□ 0.34
SHKBP1-211ENST00000595945 CCDC196A0A1B0GTZ2 297 aa17.19■□□□□ 0.34
SHKBP1-211ENST00000595945 DCAF8L1A6NGE4 600 aa17.19■□□□□ 0.34
SHKBP1-211ENST00000595945 FDPSP14324 419 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-211ENST00000595945 IFNAR1P17181 557 aa17.19■□□□□ 0.34
SHKBP1-211ENST00000595945 HMGN5P82970 282 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-211ENST00000595945 FUT2Q10981 343 aa17.19■□□□□ 0.34
SHKBP1-211ENST00000595945 PNMA8AQ86V59 439 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-211ENST00000595945 CCDC144CPQ8IYA2 1237 aa17.19■□□□□ 0.34
SHKBP1-211ENST00000595945 ZNF341Q9BYN7 854 aa17.19■□□□□ 0.34
SHKBP1-211ENST00000595945 RBM28Q9NW13 759 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-211ENST00000595945 CPLX1O14810 134 aa17.18■□□□□ 0.34
SHKBP1-211ENST00000595945 CDKL5O76039 1030 aa17.18■□□□□ 0.34
SHKBP1-211ENST00000595945 SNHG28P0DPA3 235 aa17.18■□□□□ 0.34
SHKBP1-211ENST00000595945 ICA1Q05084 483 aa17.18■□□□□ 0.34
SHKBP1-211ENST00000595945 PRAMEF18Q5VWM3 479 aa17.18■□□□□ 0.34
SHKBP1-211ENST00000595945 TMTC3Q6ZXV5 915 aa17.18■□□□□ 0.34
SHKBP1-211ENST00000595945 NBPF11Q86T75 865 aa17.18■□□□□ 0.34
SHKBP1-211ENST00000595945 SULF1Q8IWU6 871 aa17.18■□□□□ 0.34
SHKBP1-211ENST00000595945 CLIP2Q9UDT6 1046 aa17.18■□□□□ 0.34
SHKBP1-211ENST00000595945 SYNPO2Q9UMS6 1093 aa17.18■□□□□ 0.34
SHKBP1-211ENST00000595945 STK36Q9NRP7 1315 aa17.18■□□□□ 0.34
SHKBP1-211ENST00000595945 ADM5C9JUS6 153 aa17.17■□□□□ 0.34
SHKBP1-211ENST00000595945 CTNND1O60716 968 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-211ENST00000595945 EEF2P13639 858 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-211ENST00000595945 NUCB2P80303 420 aa17.17■□□□□ 0.34
SHKBP1-211ENST00000595945 SUPT20HL1Q3ZLR7 823 aa17.17■□□□□ 0.34
SHKBP1-211ENST00000595945 CPLX2Q6PUV4 134 aaKnown RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms