RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 ABCB5Q2M3G0 1257 aa15.14■□□□□ 0.01
UPF1-203ENST00000594504 SLC9C2Q5TAH2 1124 aa15.14■□□□□ 0.01
UPF1-203ENST00000594504 DNAJC2Q99543 621 aaKnown RBP15.14■□□□□ 0.01
UPF1-203ENST00000594504 FEZ1Q99689 392 aa15.14■□□□□ 0.01
UPF1-203ENST00000594504 PRO3102Q9H379 93 aa15.14■□□□□ 0.01
UPF1-203ENST00000594504 GOLIM4O00461 696 aa15.13■□□□□ 0.01
UPF1-203ENST00000594504 PDE6AP16499 860 aa15.13■□□□□ 0.01
UPF1-203ENST00000594504 MNX1P50219 401 aaPredicted RBP15.13■□□□□ 0.01
UPF1-203ENST00000594504 CATSPERGQ6ZRH7 1159 aa15.13■□□□□ 0.01
UPF1-203ENST00000594504 GPR142Q7Z601 462 aa15.13■□□□□ 0.01
UPF1-203ENST00000594504 NECAB2Q7Z6G3 386 aa15.13■□□□□ 0.01
UPF1-203ENST00000594504 CLASRPQ8N2M8 674 aaKnown RBP15.13■□□□□ 0.01
UPF1-203ENST00000594504 SDR42E1Q8WUS8 393 aa15.13■□□□□ 0.01
UPF1-203ENST00000594504 KIF1BPQ96EK5 621 aa15.13■□□□□ 0.01
UPF1-203ENST00000594504 EHD4Q9H223 541 aa15.13■□□□□ 0.01
UPF1-203ENST00000594504 STAP2Q9UGK3 403 aa15.13■□□□□ 0.01
UPF1-203ENST00000594504 ZNF532Q9HCE3 1301 aa15.13■□□□□ 0.01
UPF1-203ENST00000594504 USP17L15C9J2P7 530 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 USP17L13C9JLJ4 530 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 USP17L11C9JVI0 530 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 USP17L18D6R9N7 530 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 USP17L22D6RA61 530 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 USP17L17D6RBQ6 530 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 USP17L19D6RCP7 530 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 USP17L20D6RJB6 530 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 IFIT2P09913 472 aaKnown RBP15.12■□□□□ 0.01
UPF1-203ENST00000594504 CYP2D6P10635 497 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 PRKAR2AP13861 404 aaKnown RBP15.12■□□□□ 0.01
UPF1-203ENST00000594504 MAPK4P31152 587 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 CACNB2Q08289 660 aaPredicted RBP15.12■□□□□ 0.01
UPF1-203ENST00000594504 USP17L24Q0WX57 530 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 SEPT2Q15019 361 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 MORN1Q5T089 497 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 CERS3Q8IU89 383 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 CCAR1Q8IX12 1150 aaKnown RBP15.12■□□□□ 0.01
UPF1-203ENST00000594504 LCORLQ8N3X6 602 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 USP6NLQ92738 828 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 C12orf42Q96LP6 360 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 CABP5Q9NP86 173 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 MCM9Q9NXL9 1143 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 PCDHB15Q9Y5E8 787 aa15.12■□□□□ 0.01
UPF1-203ENST00000594504 TCRBV5S4A2TA0A5A2 114 aa15.11■□□□□ 0.01
UPF1-203ENST00000594504 SMIM22K7EJ46 135 aa15.11■□□□□ 0.01
UPF1-203ENST00000594504 PRKAB2O43741 272 aa15.11■□□□□ 0.01
UPF1-203ENST00000594504 CHGBP05060 677 aa15.11■□□□□ 0.01
UPF1-203ENST00000594504 CCND3P30281 292 aaPredicted RBP15.11■□□□□ 0.01
UPF1-203ENST00000594504 GABPAQ06546 454 aa15.11■□□□□ 0.01
UPF1-203ENST00000594504 TTF1Q15361 905 aaPredicted RBP15.11■□□□□ 0.01
UPF1-203ENST00000594504 MAP3K21Q5TCX8 1036 aa15.11■□□□□ 0.01
UPF1-203ENST00000594504 PLEKHH3Q7Z736 793 aa15.11■□□□□ 0.01
UPF1-203ENST00000594504 C7orf61Q8IZ16 206 aa15.11■□□□□ 0.01
UPF1-203ENST00000594504 BOLA2Q9H3K6 86 aa15.11■□□□□ 0.01
UPF1-203ENST00000594504 BTBD7Q9P203 1132 aa15.11■□□□□ 0.01
UPF1-203ENST00000594504 DDX60LQ5H9U9 1706 aaKnown RBP15.1■□□□□ 0.01
UPF1-203ENST00000594504 A0A1W2PRG0 241 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 MPHOSPH10O00566 681 aaKnown RBP15.1■□□□□ 0.01
UPF1-203ENST00000594504 XRCC5P13010 732 aaKnown RBP15.1■□□□□ 0.01
UPF1-203ENST00000594504 CAPN2P17655 700 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 VCAM1P19320 739 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 USP14P54578 494 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 WDR78Q5VTH9 848 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 ANKLE1Q8NAG6 615 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 SLC44A5Q8NCS7 719 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 SOCS4Q8WXH5 440 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 DYNLL2Q96FJ2 89 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 CRNKL1Q9BZJ0 848 aaKnown RBP15.1■□□□□ 0.01
UPF1-203ENST00000594504 KIAA1683Q9H0B3 1180 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 C11orf49Q9H6J7 331 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 DCTPP1Q9H773 170 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 ARMT1Q9H993 441 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 CWC22Q9HCG8 908 aaKnown RBP15.1■□□□□ 0.01
UPF1-203ENST00000594504 FLRT1Q9NZU1 646 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 OGDHLQ9ULD0 1010 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 ZMYND8Q9ULU4 1186 aaPredicted RBP15.1■□□□□ 0.01
UPF1-203ENST00000594504 RABGAP1Q9Y3P9 1069 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 NAV1Q8NEY1 1877 aa15.1■□□□□ 0.01
UPF1-203ENST00000594504 ZKSCAN1P17029 563 aaPredicted RBP15.09■□□□□ 0.01
UPF1-203ENST00000594504 SYN1P17600 705 aa15.09■□□□□ 0.01
UPF1-203ENST00000594504 RGS2P41220 211 aa15.09■□□□□ 0.01
UPF1-203ENST00000594504 MAP2K5Q13163 448 aa15.09■□□□□ 0.01
UPF1-203ENST00000594504 EXOC6Q8TAG9 804 aa15.09■□□□□ 0.01
UPF1-203ENST00000594504 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.09■□□□□ 0.01
UPF1-203ENST00000594504 GTF3C2Q8WUA4 911 aaPredicted RBP15.09■□□□□ 0.01
UPF1-203ENST00000594504 NBPF3Q9H094 633 aa15.09■□□□□ 0.01
UPF1-203ENST00000594504 RPAP3Q9H6T3 665 aaPredicted RBP15.09■□□□□ 0.01
UPF1-203ENST00000594504 DCP1AQ9NPI6 582 aaPredicted RBP15.09■□□□□ 0.01
UPF1-203ENST00000594504 SPDYE16A6NNV3 312 aaPredicted RBP15.08■□□□□ 0
UPF1-203ENST00000594504 SOX1O00570 391 aaPredicted RBP15.08■□□□□ 0
UPF1-203ENST00000594504 KIAA1755Q5JYT7 1200 aa15.08■□□□□ 0
UPF1-203ENST00000594504 LHX8Q68G74 356 aa15.08■□□□□ 0
UPF1-203ENST00000594504 NPLOC4Q8TAT6 608 aa15.08■□□□□ 0
UPF1-203ENST00000594504 LRRCC1Q9C099 1032 aa15.08■□□□□ 0
UPF1-203ENST00000594504 CYP2D7A0A087X1C5 515 aa15.07■□□□□ 0
UPF1-203ENST00000594504 SMARCA5O60264 1052 aaPredicted RBP15.07■□□□□ 0
UPF1-203ENST00000594504 PTPREP23469 700 aa15.07■□□□□ 0
UPF1-203ENST00000594504 ADD2P35612 726 aa15.07■□□□□ 0
UPF1-203ENST00000594504 TMED8Q6PL24 325 aaPredicted RBP15.07■□□□□ 0
UPF1-203ENST00000594504 CLEC10AQ8IUN9 316 aa15.07■□□□□ 0
UPF1-203ENST00000594504 APBA2Q99767 749 aa15.07■□□□□ 0
UPF1-203ENST00000594504 PAG1Q9NWQ8 432 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms