RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 TCP11L1Q9NUJ3 509 aa15.42■□□□□ 0.06
VRK3-205ENST00000593919 CNTNAP1P78357 1384 aa15.41■□□□□ 0.06
VRK3-205ENST00000593919 MYH4Q9Y623 1939 aa15.41■□□□□ 0.06
VRK3-205ENST00000593919 FOXD4L6Q3SYB3 417 aaPredicted RBP15.41■□□□□ 0.06
VRK3-205ENST00000593919 FOXD4L3Q6VB84 417 aaPredicted RBP15.41■□□□□ 0.06
VRK3-205ENST00000593919 SAMD7Q7Z3H4 446 aa15.41■□□□□ 0.06
VRK3-205ENST00000593919 CRACR2BQ8N4Y2 399 aaPredicted RBP15.41■□□□□ 0.06
VRK3-205ENST00000593919 NEDD1Q8NHV4 660 aa15.41■□□□□ 0.06
VRK3-205ENST00000593919 NUP133Q8WUM0 1156 aa15.41■□□□□ 0.06
VRK3-205ENST00000593919 RNF181Q9P0P0 153 aa15.41■□□□□ 0.06
VRK3-205ENST00000593919 ISY1Q9ULR0 285 aaKnown RBP15.41■□□□□ 0.06
VRK3-205ENST00000593919 PLIN4Q96Q06 1357 aa15.41■□□□□ 0.06
VRK3-205ENST00000593919 WDR33Q9C0J8 1336 aaKnown RBP15.41■□□□□ 0.06
VRK3-205ENST00000593919 FAM196BA6NMK8 535 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 RBM26Q5T8P6 1007 aaKnown RBP15.4■□□□□ 0.06
VRK3-205ENST00000593919 FKBP1CQ5VVH2 108 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 LARP1BQ659C4 914 aaKnown RBP15.4■□□□□ 0.06
VRK3-205ENST00000593919 CATIPQ7Z7H3 387 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 DGKHQ86XP1 1220 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 GPC2Q8N158 579 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 CSRNP1Q96S65 589 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 AKR1B1P15121 316 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 PDCP20941 246 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 TROAPQ12815 778 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 RTN1Q16799 776 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 TBC1D10BQ4KMP7 808 aaPredicted RBP15.4■□□□□ 0.06
VRK3-205ENST00000593919 CCDC178Q5BJE1 867 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 FAM184AQ8NB25 1140 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 GPT2Q8TD30 523 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 FAM151AQ8WW52 585 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 STX8Q9UNK0 236 aa15.4■□□□□ 0.06
VRK3-205ENST00000593919 FDPSP14324 419 aaKnown RBP15.39■□□□□ 0.05
VRK3-205ENST00000593919 NTRK3Q16288 839 aa15.39■□□□□ 0.05
VRK3-205ENST00000593919 METTL16Q86W50 562 aaKnown RBP15.39■□□□□ 0.05
VRK3-205ENST00000593919 FANCBQ8NB91 859 aa15.39■□□□□ 0.05
VRK3-205ENST00000593919 ANKS1AQ92625 1134 aa15.39■□□□□ 0.05
VRK3-205ENST00000593919 CEP95Q96GE4 821 aa15.39■□□□□ 0.05
VRK3-205ENST00000593919 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.39■□□□□ 0.05
VRK3-205ENST00000593919 MTMR6Q9Y217 621 aa15.39■□□□□ 0.05
VRK3-205ENST00000593919 VPS37CA5D8V6 355 aaPredicted RBP15.38■□□□□ 0.05
VRK3-205ENST00000593919 DDAH1O94760 285 aa15.38■□□□□ 0.05
VRK3-205ENST00000593919 ZSCAN22P10073 491 aaPredicted RBP15.38■□□□□ 0.05
VRK3-205ENST00000593919 KIF4BQ2VIQ3 1234 aa15.38■□□□□ 0.05
VRK3-205ENST00000593919 FAM83AQ86UY5 434 aa15.38■□□□□ 0.05
VRK3-205ENST00000593919 FOXP4Q8IVH2 680 aaPredicted RBP15.38■□□□□ 0.05
VRK3-205ENST00000593919 TRIM34Q9BYJ4 488 aa15.38■□□□□ 0.05
VRK3-205ENST00000593919 TMEM39BQ9GZU3 492 aa15.38■□□□□ 0.05
VRK3-205ENST00000593919 KAT14Q9H8E8 782 aa15.38■□□□□ 0.05
VRK3-205ENST00000593919 GPRC5DQ9NZD1 345 aa15.38■□□□□ 0.05
VRK3-205ENST00000593919 RBM27Q9P2N5 1060 aaKnown RBP15.38■□□□□ 0.05
VRK3-205ENST00000593919 POLR2AP24928 1970 aaKnown RBP15.38■□□□□ 0.05
VRK3-205ENST00000593919 CDKL5O76039 1030 aa15.38■□□□□ 0.05
VRK3-205ENST00000593919 CPLX2Q6PUV4 134 aaKnown RBP15.38■□□□□ 0.05
VRK3-205ENST00000593919 PNMA1Q8ND90 353 aa15.38■□□□□ 0.05
VRK3-205ENST00000593919 PHKBQ93100 1093 aa15.38■□□□□ 0.05
VRK3-205ENST00000593919 ORC3Q9UBD5 711 aaPredicted RBP15.38■□□□□ 0.05
VRK3-205ENST00000593919 SCAF8Q9UPN6 1271 aaKnown RBP15.38■□□□□ 0.05
VRK3-205ENST00000593919 KIF3AQ9Y496 699 aa15.38■□□□□ 0.05
VRK3-205ENST00000593919 CCDC196A0A1B0GTZ2 297 aa15.37■□□□□ 0.05
VRK3-205ENST00000593919 H7C1D1 291 aa15.37■□□□□ 0.05
VRK3-205ENST00000593919 CALM1P0DP23 149 aa15.37■□□□□ 0.05
VRK3-205ENST00000593919 CALM2P0DP24 149 aa15.37■□□□□ 0.05
VRK3-205ENST00000593919 CALM3P0DP25 149 aa15.37■□□□□ 0.05
VRK3-205ENST00000593919 C9orf131Q5VYM1 1079 aa15.37■□□□□ 0.05
VRK3-205ENST00000593919 TATDN1Q6P1N9 297 aa15.37■□□□□ 0.05
VRK3-205ENST00000593919 CDC37L1Q7L3B6 337 aa15.37■□□□□ 0.05
VRK3-205ENST00000593919 CDAN1Q8IWY9 1227 aa15.37■□□□□ 0.05
VRK3-205ENST00000593919 TMEM47Q9BQJ4 181 aa15.37■□□□□ 0.05
VRK3-205ENST00000593919 ASTN2O75129 1339 aaPredicted RBP15.37■□□□□ 0.05
VRK3-205ENST00000593919 IGKV6D-41A0A0C4DH26 115 aa15.36■□□□□ 0.05
VRK3-205ENST00000593919 PDIA4P13667 645 aaKnown RBP15.36■□□□□ 0.05
VRK3-205ENST00000593919 IFNAR1P17181 557 aa15.36■□□□□ 0.05
VRK3-205ENST00000593919 NOVP48745 357 aa15.36■□□□□ 0.05
VRK3-205ENST00000593919 PPP2R5BQ15173 497 aa15.36■□□□□ 0.05
VRK3-205ENST00000593919 GPR162Q16538 588 aa15.36■□□□□ 0.05
VRK3-205ENST00000593919 ZSCAN23Q3MJ62 389 aa15.36■□□□□ 0.05
VRK3-205ENST00000593919 CLEC10AQ8IUN9 316 aa15.36■□□□□ 0.05
VRK3-205ENST00000593919 CMTR1Q8N1G2 835 aaKnown RBP15.36■□□□□ 0.05
VRK3-205ENST00000593919 CCDC17Q96LX7 622 aa15.36■□□□□ 0.05
VRK3-205ENST00000593919 MTMR4Q9NYA4 1195 aa15.36■□□□□ 0.05
VRK3-205ENST00000593919 MPHOSPH10O00566 681 aaKnown RBP15.36■□□□□ 0.05
VRK3-205ENST00000593919 DDNO94850 711 aaPredicted RBP15.36■□□□□ 0.05
VRK3-205ENST00000593919 F13A1P00488 732 aa15.36■□□□□ 0.05
VRK3-205ENST00000593919 FOSBP53539 338 aa15.36■□□□□ 0.05
VRK3-205ENST00000593919 CERKLQ49MI3 558 aaPredicted RBP15.36■□□□□ 0.05
VRK3-205ENST00000593919 TRPM4Q8TD43 1214 aa15.36■□□□□ 0.05
VRK3-205ENST00000593919 GDPD2Q9HCC8 539 aa15.36■□□□□ 0.05
VRK3-205ENST00000593919 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.36■□□□□ 0.05
VRK3-205ENST00000593919 HERC5Q9UII4 1024 aaKnown RBP15.36■□□□□ 0.05
VRK3-205ENST00000593919 TNFAIP1Q13829 316 aa15.35■□□□□ 0.05
VRK3-205ENST00000593919 SHROOM1Q2M3G4 852 aaPredicted RBP15.35■□□□□ 0.05
VRK3-205ENST00000593919 CCDC82Q8N4S0 544 aa15.35■□□□□ 0.05
VRK3-205ENST00000593919 CTCFLQ8NI51 663 aaPredicted RBP15.35■□□□□ 0.05
VRK3-205ENST00000593919 RBM28Q9NW13 759 aaKnown RBP15.35■□□□□ 0.05
VRK3-205ENST00000593919 HACL1Q9UJ83 578 aa15.35■□□□□ 0.05
VRK3-205ENST00000593919 MYH15Q9Y2K3 1946 aa15.35■□□□□ 0.05
VRK3-205ENST00000593919 H3BQV1 296 aa15.35■□□□□ 0.05
VRK3-205ENST00000593919 PLEKHA8P1O95397 391 aa15.35■□□□□ 0.05
VRK3-205ENST00000593919 EPS15P42566 896 aa15.35■□□□□ 0.05
VRK3-205ENST00000593919 TNNI2P48788 182 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms