RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 FEZ1Q99689 392 aa14.18□□□□□ -0.14
LIG3-213ENST00000590630 MKNK2Q9HBH9 465 aa14.18□□□□□ -0.14
LIG3-213ENST00000590630 TMOD4Q9NZQ9 345 aa14.18□□□□□ -0.14
LIG3-213ENST00000590630 AKR1B1P15121 316 aa14.17□□□□□ -0.14
LIG3-213ENST00000590630 USP14P54578 494 aa14.17□□□□□ -0.14
LIG3-213ENST00000590630 PDE4BQ07343 736 aa14.17□□□□□ -0.14
LIG3-213ENST00000590630 PPARAQ07869 468 aa14.17□□□□□ -0.14
LIG3-213ENST00000590630 PABPC4Q13310 644 aaKnown RBP eCLIP14.17□□□□□ -0.14
LIG3-213ENST00000590630 KIAA1683Q9H0B3 1180 aa14.17□□□□□ -0.14
LIG3-213ENST00000590630 PNMA3Q9UL41 463 aa14.17□□□□□ -0.14
LIG3-213ENST00000590630 MYH4Q9Y623 1939 aa14.17□□□□□ -0.14
LIG3-213ENST00000590630 CENPFP49454 3210 aa14.17□□□□□ -0.14
LIG3-213ENST00000590630 RAD50Q92878 1312 aa14.16□□□□□ -0.14
LIG3-213ENST00000590630 FGAP02671 866 aa14.16□□□□□ -0.14
LIG3-213ENST00000590630 RASA1P20936 1047 aa14.16□□□□□ -0.14
LIG3-213ENST00000590630 TREML2Q5T2D2 321 aa14.16□□□□□ -0.14
LIG3-213ENST00000590630 USP17L2Q6R6M4 530 aa14.16□□□□□ -0.14
LIG3-213ENST00000590630 RUFY2Q8WXA3 655 aa14.16□□□□□ -0.14
LIG3-213ENST00000590630 KANSL2Q9H9L4 492 aa14.16□□□□□ -0.14
LIG3-213ENST00000590630 PPP4R2Q9NY27 417 aa14.16□□□□□ -0.14
LIG3-213ENST00000590630 ANAPC4Q9UJX5 808 aa14.16□□□□□ -0.14
LIG3-213ENST00000590630 ADGRA2Q96PE1 1338 aa14.15□□□□□ -0.14
LIG3-213ENST00000590630 CHMLP26374 656 aa14.15□□□□□ -0.14
LIG3-213ENST00000590630 SP3Q02447 781 aa14.15□□□□□ -0.14
LIG3-213ENST00000590630 ICA1Q05084 483 aa14.15□□□□□ -0.14
LIG3-213ENST00000590630 BMP2KLQ5H9B9 411 aa14.15□□□□□ -0.14
LIG3-213ENST00000590630 ZNF444Q8N0Y2 327 aaPredicted RBP14.15□□□□□ -0.14
LIG3-213ENST00000590630 STK11IPQ8N1F8 1099 aa14.15□□□□□ -0.14
LIG3-213ENST00000590630 ACER1Q8TDN7 264 aa14.15□□□□□ -0.14
LIG3-213ENST00000590630 ERO1AQ96HE7 468 aa14.15□□□□□ -0.14
LIG3-213ENST00000590630 C12orf42Q96LP6 360 aa14.15□□□□□ -0.14
LIG3-213ENST00000590630 SH2D4AQ9H788 454 aa14.15□□□□□ -0.14
LIG3-213ENST00000590630 ARHGEF10LQ9HCE6 1279 aa14.15□□□□□ -0.14
LIG3-213ENST00000590630 EMILIN3Q9NT22 766 aa14.15□□□□□ -0.14
LIG3-213ENST00000590630 MGAMO43451 1857 aa14.14□□□□□ -0.15
LIG3-213ENST00000590630 PLIN4Q96Q06 1357 aa14.14□□□□□ -0.15
LIG3-213ENST00000590630 CYP2C8P10632 490 aa14.14□□□□□ -0.15
LIG3-213ENST00000590630 HOXA7P31268 230 aaPredicted RBP14.14□□□□□ -0.15
LIG3-213ENST00000590630 DGKZQ13574 1117 aa14.14□□□□□ -0.15
LIG3-213ENST00000590630 C17orf99Q6UX52 265 aa14.14□□□□□ -0.15
LIG3-213ENST00000590630 CTU1Q7Z7A3 348 aaKnown RBP14.14□□□□□ -0.15
LIG3-213ENST00000590630 TNS4Q8IZW8 715 aa14.14□□□□□ -0.15
LIG3-213ENST00000590630 SMCR8Q8TEV9 937 aaPredicted RBP14.14□□□□□ -0.15
LIG3-213ENST00000590630 DSCC1Q9BVC3 393 aa14.14□□□□□ -0.15
LIG3-213ENST00000590630 A0A1W2PRG0 241 aa14.13□□□□□ -0.15
LIG3-213ENST00000590630 PRDM1O75626 825 aa14.13□□□□□ -0.15
LIG3-213ENST00000590630 OSBPP22059 807 aa14.13□□□□□ -0.15
LIG3-213ENST00000590630 IRX3P78415 501 aaPredicted RBP14.13□□□□□ -0.15
LIG3-213ENST00000590630 CTDSPL2Q05D32 466 aa14.13□□□□□ -0.15
LIG3-213ENST00000590630 ZYXQ15942 572 aaKnown RBP14.13□□□□□ -0.15
LIG3-213ENST00000590630 ASCC2Q9H1I8 757 aaPredicted RBP14.13□□□□□ -0.15
LIG3-213ENST00000590630 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.13□□□□□ -0.15
LIG3-213ENST00000590630 TMX2Q9Y320 296 aa14.13□□□□□ -0.15
LIG3-213ENST00000590630 ORC4O43929 436 aa14.12□□□□□ -0.15
LIG3-213ENST00000590630 FGRP09769 529 aa14.12□□□□□ -0.15
LIG3-213ENST00000590630 TSPY3P0CV98 308 aa14.12□□□□□ -0.15
LIG3-213ENST00000590630 TSPY8P0CW00 308 aa14.12□□□□□ -0.15
LIG3-213ENST00000590630 PCP11498 1178 aaKnown RBP14.12□□□□□ -0.15
LIG3-213ENST00000590630 EEF2P13639 858 aaKnown RBP14.12□□□□□ -0.15
LIG3-213ENST00000590630 VCAM1P19320 739 aa14.12□□□□□ -0.15
LIG3-213ENST00000590630 GCLCP48506 637 aaPredicted RBP14.12□□□□□ -0.15
LIG3-213ENST00000590630 ARHGEF6Q15052 776 aa14.12□□□□□ -0.15
LIG3-213ENST00000590630 PKN2Q16513 984 aaKnown RBP14.12□□□□□ -0.15
LIG3-213ENST00000590630 SKAP1Q86WV1 359 aa14.12□□□□□ -0.15
LIG3-213ENST00000590630 CLEC10AQ8IUN9 316 aa14.12□□□□□ -0.15
LIG3-213ENST00000590630 SIAH1Q8IUQ4 282 aa14.12□□□□□ -0.15
LIG3-213ENST00000590630 LPAR1Q92633 364 aa14.12□□□□□ -0.15
LIG3-213ENST00000590630 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.12□□□□□ -0.15
LIG3-213ENST00000590630 IL25Q9H293 177 aa14.12□□□□□ -0.15
LIG3-213ENST00000590630 CPA4Q9UI42 421 aa14.12□□□□□ -0.15
LIG3-213ENST00000590630 CTNNA3Q9UI47 895 aa14.12□□□□□ -0.15
LIG3-213ENST00000590630 PARP14Q460N5 1801 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 IGKV6D-41A0A0C4DH26 115 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 USP17L15C9J2P7 530 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 USP17L13C9JLJ4 530 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 USP17L11C9JVI0 530 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 USP17L18D6R9N7 530 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 USP17L22D6RA61 530 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 USP17L17D6RBQ6 530 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 USP17L19D6RCP7 530 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 USP17L20D6RJB6 530 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 BCRP11274 1271 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 LACTBP83111 547 aaPredicted RBP14.11□□□□□ -0.15
LIG3-213ENST00000590630 USP17L24Q0WX57 530 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 KIF22Q14807 665 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 PPP4R3BQ5MIZ7 849 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 NEDD1Q8NHV4 660 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 CD99L2Q8TCZ2 262 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 NYAP2Q9P242 653 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 SYNPO2Q9UMS6 1093 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 ZSWIM8A7E2V4 1837 aa14.11□□□□□ -0.15
LIG3-213ENST00000590630 RLFQ13129 1914 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 TSPY2A6NKD2 308 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 ZNF213O14771 459 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 SGSM2O43147 1006 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 GNRH1P01148 92 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 NT5C2P49902 561 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 HAND2P61296 217 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 TFAP4Q01664 338 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 ATP2B2Q01814 1243 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms