RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 WRNIP1Q96S55 665 aa12.3□□□□□ -0.44
VPS4B-204ENST00000589604 ZNF341Q9BYN7 854 aa12.3□□□□□ -0.44
VPS4B-204ENST00000589604 EHD4Q9H223 541 aa12.3□□□□□ -0.44
VPS4B-204ENST00000589604 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.3□□□□□ -0.44
VPS4B-204ENST00000589604 SH2B1Q9NRF2 756 aaPredicted RBP12.3□□□□□ -0.44
VPS4B-204ENST00000589604 ARPP21Q9UBL0 812 aaPredicted RBP12.3□□□□□ -0.44
VPS4B-204ENST00000589604 PPP1R12BO60237 982 aaPredicted RBP12.29□□□□□ -0.44
VPS4B-204ENST00000589604 FKBP1BP68106 108 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 APOBRQ0VD83 1088 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 TRDNQ13061 729 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 RALYLQ86SE5 291 aaKnown RBP12.29□□□□□ -0.44
VPS4B-204ENST00000589604 TTC6Q86TZ1 520 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 CCDC84Q86UT8 332 aaPredicted RBP12.29□□□□□ -0.44
VPS4B-204ENST00000589604 FOXP4Q8IVH2 680 aaPredicted RBP12.29□□□□□ -0.44
VPS4B-204ENST00000589604 CNNM2Q9H8M5 875 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 SENP2Q9HC62 589 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 SERPINB13Q9UIV8 391 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 SNCAIPQ9Y6H5 919 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 MYH8P13535 1937 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 ATAD5Q96QE3 1844 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 SH2B2O14492 632 aaPredicted RBP12.29□□□□□ -0.44
VPS4B-204ENST00000589604 ORC4O43929 436 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 KDM4AO75164 1064 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 HLA-DOAP06340 250 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 GJA5P36382 358 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 CDK8P49336 464 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 DCAF15Q66K64 600 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 TATDN1Q6P1N9 297 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 C16orf86Q6ZW13 317 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 ARMC9Q7Z3E5 817 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 KRT23Q9C075 422 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 RNF41Q9H4P4 317 aaPredicted RBP12.29□□□□□ -0.44
VPS4B-204ENST00000589604 CHMP5Q9NZZ3 219 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 HERC5Q9UII4 1024 aaKnown RBP12.29□□□□□ -0.44
VPS4B-204ENST00000589604 BRPF3Q9ULD4 1205 aa12.29□□□□□ -0.44
VPS4B-204ENST00000589604 ABT1Q9ULW3 272 aaKnown RBP12.29□□□□□ -0.44
VPS4B-204ENST00000589604 PHIPQ8WWQ0 1821 aa12.28□□□□□ -0.44
VPS4B-204ENST00000589604 DOCK1Q14185 1865 aa12.28□□□□□ -0.44
VPS4B-204ENST00000589604 RASSF10A6NK89 507 aa12.28□□□□□ -0.44
VPS4B-204ENST00000589604 FAM155AB1AL88 458 aaPredicted RBP12.28□□□□□ -0.44
VPS4B-204ENST00000589604 PFKFB2O60825 505 aa12.28□□□□□ -0.44
VPS4B-204ENST00000589604 GDF11O95390 407 aa12.28□□□□□ -0.44
VPS4B-204ENST00000589604 HSP90AA1P07900 732 aaKnown RBP12.28□□□□□ -0.44
VPS4B-204ENST00000589604 PCP11498 1178 aaKnown RBP12.28□□□□□ -0.44
VPS4B-204ENST00000589604 IREB2P48200 963 aaKnown RBP12.28□□□□□ -0.44
VPS4B-204ENST00000589604 MAP3K9P80192 1104 aa12.28□□□□□ -0.44
VPS4B-204ENST00000589604 CCDC83Q8IWF9 413 aa12.28□□□□□ -0.44
VPS4B-204ENST00000589604 CRACR2BQ8N4Y2 399 aaPredicted RBP12.28□□□□□ -0.44
VPS4B-204ENST00000589604 ZNF274Q96GC6 653 aaPredicted RBP12.28□□□□□ -0.44
VPS4B-204ENST00000589604 ZIC5Q96T25 663 aa12.28□□□□□ -0.44
VPS4B-204ENST00000589604 ELP3Q9H9T3 547 aa12.28□□□□□ -0.44
VPS4B-204ENST00000589604 LY9Q9HBG7 655 aa12.28□□□□□ -0.44
VPS4B-204ENST00000589604 CWC22Q9HCG8 908 aaKnown RBP12.28□□□□□ -0.44
VPS4B-204ENST00000589604 DTNBO60941 627 aa12.27□□□□□ -0.45
VPS4B-204ENST00000589604 PRDM1O75626 825 aa12.27□□□□□ -0.45
VPS4B-204ENST00000589604 PDIA3P30101 505 aaKnown RBP12.27□□□□□ -0.45
VPS4B-204ENST00000589604 CAP2P40123 477 aa12.27□□□□□ -0.45
VPS4B-204ENST00000589604 RRP12Q5JTH9 1297 aaKnown RBP12.27□□□□□ -0.45
VPS4B-204ENST00000589604 CYP4F22Q6NT55 531 aa12.27□□□□□ -0.45
VPS4B-204ENST00000589604 RASAL3Q86YV0 1011 aa12.27□□□□□ -0.45
VPS4B-204ENST00000589604 GTF3C6Q969F1 213 aa12.27□□□□□ -0.45
VPS4B-204ENST00000589604 HOOK2Q96ED9 719 aa12.27□□□□□ -0.45
VPS4B-204ENST00000589604 TMEM87BQ96K49 555 aa12.27□□□□□ -0.45
VPS4B-204ENST00000589604 MTA3Q9BTC8 594 aa12.27□□□□□ -0.45
VPS4B-204ENST00000589604 HPS5Q9UPZ3 1129 aa12.27□□□□□ -0.45
VPS4B-204ENST00000589604 RASA1P20936 1047 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 GUCY1A2P33402 732 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 SCRN1Q12765 414 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 STK3Q13188 491 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 SEC23AQ15436 765 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 NOL9Q5SY16 702 aaKnown RBP12.26□□□□□ -0.45
VPS4B-204ENST00000589604 IFFO2Q5TF58 517 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 SGMS1Q86VZ5 419 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 ANKRD13AQ8IZ07 590 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 DNAJC5GQ8N7S2 189 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.26□□□□□ -0.45
VPS4B-204ENST00000589604 GREB1LQ9C091 1923 aaPredicted RBP12.26□□□□□ -0.45
VPS4B-204ENST00000589604 CTNND1O60716 968 aaKnown RBP12.26□□□□□ -0.45
VPS4B-204ENST00000589604 AKR1B1P15121 316 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 LIFRP42702 1097 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 MKRN3Q13064 507 aaKnown RBP12.26□□□□□ -0.45
VPS4B-204ENST00000589604 PKP1Q13835 747 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 RGMBQ6NW40 437 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 CLEC10AQ8IUN9 316 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 SCYL3Q8IZE3 742 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 RNF25Q96BH1 459 aaPredicted RBP12.26□□□□□ -0.45
VPS4B-204ENST00000589604 ZDHHC9Q9Y397 364 aa12.26□□□□□ -0.45
VPS4B-204ENST00000589604 AOC2O75106 756 aa12.25□□□□□ -0.45
VPS4B-204ENST00000589604 CTDNEP1O95476 244 aa12.25□□□□□ -0.45
VPS4B-204ENST00000589604 GH2P01242 217 aa12.25□□□□□ -0.45
VPS4B-204ENST00000589604 SLC10A3P09131 477 aa12.25□□□□□ -0.45
VPS4B-204ENST00000589604 PTPRAP18433 802 aa12.25□□□□□ -0.45
VPS4B-204ENST00000589604 VEGFBP49765 207 aa12.25□□□□□ -0.45
VPS4B-204ENST00000589604 ZNF157P51786 506 aaPredicted RBP12.25□□□□□ -0.45
VPS4B-204ENST00000589604 FGD1P98174 961 aa12.25□□□□□ -0.45
VPS4B-204ENST00000589604 DEFB115Q30KQ5 88 aa12.25□□□□□ -0.45
VPS4B-204ENST00000589604 CERKLQ49MI3 558 aaPredicted RBP12.25□□□□□ -0.45
VPS4B-204ENST00000589604 ESR2Q92731 530 aa12.25□□□□□ -0.45
VPS4B-204ENST00000589604 WNK4Q96J92 1243 aa12.25□□□□□ -0.45
VPS4B-204ENST00000589604 HHIPL1Q96JK4 782 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms