RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 AKR1B1P15121 316 aa26.01■■□□□ 1.75
ATG4D-209ENST00000588857 RXRAP19793 462 aa26.01■■□□□ 1.75
ATG4D-209ENST00000588857 NUCB2P80303 420 aa26.01■■□□□ 1.75
ATG4D-209ENST00000588857 RASA3Q14644 834 aa26.01■■□□□ 1.75
ATG4D-209ENST00000588857 CERKLQ49MI3 558 aaPredicted RBP26.01■■□□□ 1.75
ATG4D-209ENST00000588857 RCSD1Q6JBY9 416 aa26.01■■□□□ 1.75
ATG4D-209ENST00000588857 TRPM4Q8TD43 1214 aa26.01■■□□□ 1.75
ATG4D-209ENST00000588857 PLIN4Q96Q06 1357 aa26.01■■□□□ 1.75
ATG4D-209ENST00000588857 STX8Q9UNK0 236 aa26.01■■□□□ 1.75
ATG4D-209ENST00000588857 CALM1P0DP23 149 aa26■■□□□ 1.75
ATG4D-209ENST00000588857 CALM2P0DP24 149 aa26■■□□□ 1.75
ATG4D-209ENST00000588857 CALM3P0DP25 149 aa26■■□□□ 1.75
ATG4D-209ENST00000588857 TATDN1Q6P1N9 297 aa26■■□□□ 1.75
ATG4D-209ENST00000588857 CPLX2Q6PUV4 134 aaKnown RBP26■■□□□ 1.75
ATG4D-209ENST00000588857 USP50Q70EL3 339 aaPredicted RBP26■■□□□ 1.75
ATG4D-209ENST00000588857 CCDC144CPQ8IYA2 1237 aa26■■□□□ 1.75
ATG4D-209ENST00000588857 NUP133Q8WUM0 1156 aa26■■□□□ 1.75
ATG4D-209ENST00000588857 XPO5Q9HAV4 1204 aaKnown RBP eCLIP26■■□□□ 1.75
ATG4D-209ENST00000588857 ADARB2Q9NS39 739 aaKnown RBP26■■□□□ 1.75
ATG4D-209ENST00000588857 ASTN2O75129 1339 aaPredicted RBP25.99■■□□□ 1.75
ATG4D-209ENST00000588857 MPHOSPH10O00566 681 aaKnown RBP25.99■■□□□ 1.75
ATG4D-209ENST00000588857 SLURP2P0DP57 97 aa25.99■■□□□ 1.75
ATG4D-209ENST00000588857 NID2Q14112 1375 aa25.99■■□□□ 1.75
ATG4D-209ENST00000588857 CCDC196A0A1B0GTZ2 297 aa25.99■■□□□ 1.75
ATG4D-209ENST00000588857 JAK2O60674 1132 aa25.99■■□□□ 1.75
ATG4D-209ENST00000588857 DDAH1O94760 285 aa25.99■■□□□ 1.75
ATG4D-209ENST00000588857 PPP2R5BQ15173 497 aa25.99■■□□□ 1.75
ATG4D-209ENST00000588857 RTN1Q16799 776 aa25.99■■□□□ 1.75
ATG4D-209ENST00000588857 APOBEC3FQ8IUX4 373 aaKnown RBP25.99■■□□□ 1.75
ATG4D-209ENST00000588857 NSUN7Q8NE18 718 aaKnown RBP25.99■■□□□ 1.75
ATG4D-209ENST00000588857 CEP95Q96GE4 821 aa25.99■■□□□ 1.75
ATG4D-209ENST00000588857 GREB1LQ9C091 1923 aaPredicted RBP25.98■■□□□ 1.75
ATG4D-209ENST00000588857 PTPDC1A2A3K4 754 aa25.98■■□□□ 1.75
ATG4D-209ENST00000588857 DTNBO60941 627 aa25.98■■□□□ 1.75
ATG4D-209ENST00000588857 CDKL5O76039 1030 aa25.98■■□□□ 1.75
ATG4D-209ENST00000588857 CTDNEP1O95476 244 aa25.98■■□□□ 1.75
ATG4D-209ENST00000588857 HMGN5P82970 282 aaKnown RBP25.98■■□□□ 1.75
ATG4D-209ENST00000588857 ANGEL2Q5VTE6 544 aaKnown RBP25.98■■□□□ 1.75
ATG4D-209ENST00000588857 FANCBQ8NB91 859 aa25.98■■□□□ 1.75
ATG4D-209ENST00000588857 SMARCC2Q8TAQ2 1214 aa25.98■■□□□ 1.75
ATG4D-209ENST00000588857 CEP350Q5VT06 3117 aa25.98■■□□□ 1.75
ATG4D-209ENST00000588857 ADD1P35611 737 aaKnown RBP25.97■■□□□ 1.75
ATG4D-209ENST00000588857 PPP4R3BQ5MIZ7 849 aa25.97■■□□□ 1.75
ATG4D-209ENST00000588857 DDX11Q96FC9 970 aa25.97■■□□□ 1.75
ATG4D-209ENST00000588857 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.97■■□□□ 1.75
ATG4D-209ENST00000588857 DEFB129Q9H1M3 183 aa25.97■■□□□ 1.75
ATG4D-209ENST00000588857 SCAF8Q9UPN6 1271 aaKnown RBP25.97■■□□□ 1.75
ATG4D-209ENST00000588857 KIF3AQ9Y496 699 aa25.97■■□□□ 1.75
ATG4D-209ENST00000588857 POLR2AP24928 1970 aaKnown RBP25.97■■□□□ 1.75
ATG4D-209ENST00000588857 MYH4Q9Y623 1939 aa25.96■■□□□ 1.75
ATG4D-209ENST00000588857 TBC1D12O60347 775 aa25.96■■□□□ 1.75
ATG4D-209ENST00000588857 PDCP20941 246 aa25.96■■□□□ 1.75
ATG4D-209ENST00000588857 FAM184AQ8NB25 1140 aa25.96■■□□□ 1.75
ATG4D-209ENST00000588857 PNMA1Q8ND90 353 aa25.96■■□□□ 1.75
ATG4D-209ENST00000588857 TMEM47Q9BQJ4 181 aa25.96■■□□□ 1.75
ATG4D-209ENST00000588857 MTMR4Q9NYA4 1195 aa25.96■■□□□ 1.75
ATG4D-209ENST00000588857 PGAP2Q9UHJ9 254 aa25.96■■□□□ 1.75
ATG4D-209ENST00000588857 ITGBL1O95965 494 aaPredicted RBP25.95■■□□□ 1.75
ATG4D-209ENST00000588857 CDC27P30260 824 aa25.95■■□□□ 1.75
ATG4D-209ENST00000588857 HIRAP54198 1017 aaPredicted RBP25.95■■□□□ 1.75
ATG4D-209ENST00000588857 TROAPQ12815 778 aa25.95■■□□□ 1.75
ATG4D-209ENST00000588857 GGA3Q9NZ52 723 aa25.95■■□□□ 1.75
ATG4D-209ENST00000588857 IGKV6D-41A0A0C4DH26 115 aa25.95■■□□□ 1.74
ATG4D-209ENST00000588857 TOP1P11387 765 aaKnown RBP25.95■■□□□ 1.74
ATG4D-209ENST00000588857 RAB3GAP1Q15042 981 aa25.95■■□□□ 1.74
ATG4D-209ENST00000588857 ABCB5Q2M3G0 1257 aa25.95■■□□□ 1.74
ATG4D-209ENST00000588857 CDAN1Q8IWY9 1227 aa25.95■■□□□ 1.74
ATG4D-209ENST00000588857 CTCFLQ8NI51 663 aaPredicted RBP25.95■■□□□ 1.74
ATG4D-209ENST00000588857 FAM217BQ9NTX9 383 aaPredicted RBP25.95■■□□□ 1.74
ATG4D-209ENST00000588857 PDIA4P13667 645 aaKnown RBP25.94■■□□□ 1.74
ATG4D-209ENST00000588857 NOVP48745 357 aa25.94■■□□□ 1.74
ATG4D-209ENST00000588857 LARP1BQ659C4 914 aaKnown RBP25.94■■□□□ 1.74
ATG4D-209ENST00000588857 MAP1SQ66K74 1059 aaPredicted RBP25.94■■□□□ 1.74
ATG4D-209ENST00000588857 TMEM179Q6ZVK1 233 aa25.94■■□□□ 1.74
ATG4D-209ENST00000588857 TEPSINQ96N21 525 aa25.94■■□□□ 1.74
ATG4D-209ENST00000588857 CABP5Q9NP86 173 aa25.94■■□□□ 1.74
ATG4D-209ENST00000588857 RBM28Q9NW13 759 aaKnown RBP25.94■■□□□ 1.74
ATG4D-209ENST00000588857 TTLL1O95922 423 aa25.93■■□□□ 1.74
ATG4D-209ENST00000588857 SYT1P21579 422 aa25.93■■□□□ 1.74
ATG4D-209ENST00000588857 HTRA3P83110 453 aa25.93■■□□□ 1.74
ATG4D-209ENST00000588857 PKP1Q13835 747 aa25.93■■□□□ 1.74
ATG4D-209ENST00000588857 MIGA2Q7L4E1 593 aa25.93■■□□□ 1.74
ATG4D-209ENST00000588857 PASKQ96RG2 1323 aa25.92■■□□□ 1.74
ATG4D-209ENST00000588857 MYH6P13533 1939 aa25.92■■□□□ 1.74
ATG4D-209ENST00000588857 GDF11O95390 407 aa25.92■■□□□ 1.74
ATG4D-209ENST00000588857 KIF5BP33176 963 aa25.92■■□□□ 1.74
ATG4D-209ENST00000588857 DNAJC5GQ8N7S2 189 aa25.92■■□□□ 1.74
ATG4D-209ENST00000588857 KANSL2Q9H9L4 492 aa25.92■■□□□ 1.74
ATG4D-209ENST00000588857 PITPNM2Q9BZ72 1349 aa25.92■■□□□ 1.74
ATG4D-209ENST00000588857 WDR33Q9C0J8 1336 aaKnown RBP25.92■■□□□ 1.74
ATG4D-209ENST00000588857 STX6O43752 255 aa25.91■■□□□ 1.74
ATG4D-209ENST00000588857 HOOK2Q96ED9 719 aa25.91■■□□□ 1.74
ATG4D-209ENST00000588857 MAP3K14Q99558 947 aa25.91■■□□□ 1.74
ATG4D-209ENST00000588857 ORC3Q9UBD5 711 aaPredicted RBP25.91■■□□□ 1.74
ATG4D-209ENST00000588857 CLIP2Q9UDT6 1046 aa25.91■■□□□ 1.74
ATG4D-209ENST00000588857 PPP2R3BQ9Y5P8 575 aa25.91■■□□□ 1.74
ATG4D-209ENST00000588857 PPFIA3O75145 1194 aa25.9■■□□□ 1.74
ATG4D-209ENST00000588857 IFNAR1P17181 557 aa25.9■■□□□ 1.74
ATG4D-209ENST00000588857 MAP3K10Q02779 954 aa25.9■■□□□ 1.74
ATG4D-209ENST00000588857 NTRK3Q16288 839 aa25.9■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms