RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 RANBP2P49792 3224 aaKnown RBP17.52■□□□□ 0.39
SMARCE1-216ENST00000580419 INHAP05111 366 aa17.51■□□□□ 0.39
SMARCE1-216ENST00000580419 POLR3DP05423 398 aaPredicted RBP17.51■□□□□ 0.39
SMARCE1-216ENST00000580419 ANKLE1Q8NAG6 615 aa17.51■□□□□ 0.39
SMARCE1-216ENST00000580419 CCDC17Q96LX7 622 aa17.51■□□□□ 0.39
SMARCE1-216ENST00000580419 HTATIP2Q9BUP3 242 aa17.51■□□□□ 0.39
SMARCE1-216ENST00000580419 MCM9Q9NXL9 1143 aa17.51■□□□□ 0.39
SMARCE1-216ENST00000580419 RBPJLQ9UBG7 517 aa17.51■□□□□ 0.39
SMARCE1-216ENST00000580419 TRIOBPQ9H2D6 2365 aa17.5■□□□□ 0.39
SMARCE1-216ENST00000580419 ERVK-9P63128 1117 aa17.5■□□□□ 0.39
SMARCE1-216ENST00000580419 ERVK-24P63145 666 aa17.5■□□□□ 0.39
SMARCE1-216ENST00000580419 CATSPERGQ6ZRH7 1159 aa17.5■□□□□ 0.39
SMARCE1-216ENST00000580419 USP6NLQ92738 828 aa17.5■□□□□ 0.39
SMARCE1-216ENST00000580419 DNAJC2Q99543 621 aaKnown RBP17.5■□□□□ 0.39
SMARCE1-216ENST00000580419 BAZ2AQ9UIF9 1905 aaKnown RBP17.49■□□□□ 0.39
SMARCE1-216ENST00000580419 CCNA1P78396 465 aa17.49■□□□□ 0.39
SMARCE1-216ENST00000580419 MAP3K21Q5TCX8 1036 aa17.49■□□□□ 0.39
SMARCE1-216ENST00000580419 GIMAP6Q6P9H5 292 aa17.49■□□□□ 0.39
SMARCE1-216ENST00000580419 TMEM179Q6ZVK1 233 aa17.49■□□□□ 0.39
SMARCE1-216ENST00000580419 NUDT12Q9BQG2 462 aa17.49■□□□□ 0.39
SMARCE1-216ENST00000580419 UNC93B1Q9H1C4 597 aa17.49■□□□□ 0.39
SMARCE1-216ENST00000580419 BOLA2Q9H3K6 86 aa17.49■□□□□ 0.39
SMARCE1-216ENST00000580419 ECHDC1Q9NTX5 307 aa17.49■□□□□ 0.39
SMARCE1-216ENST00000580419 RPTORQ8N122 1335 aa17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 GLRX3O76003 335 aaKnown RBP17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 ELNP15502 786 aa17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 GUCY1A2P33402 732 aa17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 SHROOM1Q2M3G4 852 aaPredicted RBP17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 C20orf194Q5TEA3 1177 aa17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 AMOTL1Q8IY63 956 aa17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 LCORLQ8N3X6 602 aa17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 LPAR1Q92633 364 aa17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 DDRGK1Q96HY6 314 aa17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 GPATCH3Q96I76 525 aa17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 FEZ1Q99689 392 aa17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 TXNRD2Q9NNW7 524 aa17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 RLFQ13129 1914 aa17.48■□□□□ 0.39
SMARCE1-216ENST00000580419 APBB1O00213 710 aa17.47■□□□□ 0.39
SMARCE1-216ENST00000580419 VCAM1P19320 739 aa17.47■□□□□ 0.39
SMARCE1-216ENST00000580419 RAB3GAP1Q15042 981 aa17.47■□□□□ 0.39
SMARCE1-216ENST00000580419 C12orf60Q5U649 245 aa17.47■□□□□ 0.39
SMARCE1-216ENST00000580419 SH2D4AQ9H788 454 aa17.47■□□□□ 0.39
SMARCE1-216ENST00000580419 HOXC10Q9NYD6 342 aa17.47■□□□□ 0.39
SMARCE1-216ENST00000580419 FARP2O94887 1054 aaPredicted RBP17.46■□□□□ 0.39
SMARCE1-216ENST00000580419 ZFYP08048 801 aaPredicted RBP17.46■□□□□ 0.39
SMARCE1-216ENST00000580419 HOXC6P09630 235 aa17.46■□□□□ 0.39
SMARCE1-216ENST00000580419 HABP4Q5JVS0 413 aaKnown RBP17.46■□□□□ 0.39
SMARCE1-216ENST00000580419 MORN1Q5T089 497 aa17.46■□□□□ 0.39
SMARCE1-216ENST00000580419 POTEEQ6S8J3 1075 aa17.46■□□□□ 0.39
SMARCE1-216ENST00000580419 MB21D1Q8N884 522 aa17.46■□□□□ 0.39
SMARCE1-216ENST00000580419 KBTBD3Q8NAB2 608 aa17.46■□□□□ 0.39
SMARCE1-216ENST00000580419 SDR42E1Q8WUS8 393 aa17.46■□□□□ 0.39
SMARCE1-216ENST00000580419 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.46■□□□□ 0.39
SMARCE1-216ENST00000580419 HMX1Q9NP08 348 aaPredicted RBP17.46■□□□□ 0.39
SMARCE1-216ENST00000580419 ZNF236Q9UL36 1845 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 ECM2O94769 699 aaPredicted RBP17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 MBD4O95243 580 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 RGS2P41220 211 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 SEPT2Q15019 361 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 LRRFIP1Q32MZ4 808 aaKnown RBP17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 SBK1Q52WX2 424 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 C16orf86Q6ZW13 317 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 GPR142Q7Z601 462 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 PLEKHH3Q7Z736 793 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 TICAM2Q86XR7 235 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 ACER1Q8TDN7 264 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 EDC3Q96F86 508 aaKnown RBP17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 DEFB118Q96PH6 123 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 ARMT1Q9H993 441 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 TMX2Q9Y320 296 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 NR2E3Q9Y5X4 410 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 TTC41PQ6P2S7 1318 aa17.45■□□□□ 0.38
SMARCE1-216ENST00000580419 A0A0G2JMZ2 1700 aa17.44■□□□□ 0.38
SMARCE1-216ENST00000580419 MYCP01106 439 aaPredicted RBP17.44■□□□□ 0.38
SMARCE1-216ENST00000580419 AAMPQ13685 434 aa17.44■□□□□ 0.38
SMARCE1-216ENST00000580419 COG2Q14746 738 aa17.44■□□□□ 0.38
SMARCE1-216ENST00000580419 Q3C1V9 767 aa17.44■□□□□ 0.38
SMARCE1-216ENST00000580419 CCAR1Q8IX12 1150 aaKnown RBP17.44■□□□□ 0.38
SMARCE1-216ENST00000580419 SHCBP1Q8NEM2 672 aa17.44■□□□□ 0.38
SMARCE1-216ENST00000580419 APBA2Q99767 749 aa17.44■□□□□ 0.38
SMARCE1-216ENST00000580419 ARPP21Q9UBL0 812 aaPredicted RBP17.44■□□□□ 0.38
SMARCE1-216ENST00000580419 PARP14Q460N5 1801 aa17.44■□□□□ 0.38
SMARCE1-216ENST00000580419 GREB1LQ9C091 1923 aaPredicted RBP17.43■□□□□ 0.38
SMARCE1-216ENST00000580419 SLC15A5A6NIM6 579 aa17.43■□□□□ 0.38
SMARCE1-216ENST00000580419 SPDYE16A6NNV3 312 aaPredicted RBP17.43■□□□□ 0.38
SMARCE1-216ENST00000580419 STRNO43815 780 aa17.43■□□□□ 0.38
SMARCE1-216ENST00000580419 CNMDO75829 334 aa17.43■□□□□ 0.38
SMARCE1-216ENST00000580419 TFRCP02786 760 aaKnown RBP17.43■□□□□ 0.38
SMARCE1-216ENST00000580419 GNAT2P19087 354 aa17.43■□□□□ 0.38
SMARCE1-216ENST00000580419 TRIB2Q92519 343 aa17.43■□□□□ 0.38
SMARCE1-216ENST00000580419 PORCNQ9H237 461 aa17.43■□□□□ 0.38
SMARCE1-216ENST00000580419 ARHGEF10LQ9HCE6 1279 aa17.43■□□□□ 0.38
SMARCE1-216ENST00000580419 OGDHLQ9ULD0 1010 aa17.43■□□□□ 0.38
SMARCE1-216ENST00000580419 A0A1W2PRG0 241 aa17.42■□□□□ 0.38
SMARCE1-216ENST00000580419 USP17L12C9JPN9 530 aa17.42■□□□□ 0.38
SMARCE1-216ENST00000580419 USP17L21D6R901 530 aa17.42■□□□□ 0.38
SMARCE1-216ENST00000580419 H0YGN5 161 aa17.42■□□□□ 0.38
SMARCE1-216ENST00000580419 IGHA2P01877 340 aa17.42■□□□□ 0.38
SMARCE1-216ENST00000580419 MAP2K5Q13163 448 aa17.42■□□□□ 0.38
SMARCE1-216ENST00000580419 NECAB2Q7Z6G3 386 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms