RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 GDF11O95390 407 aa18.92■□□□□ 0.62
SS18-211ENST00000578954 PDIA3P30101 505 aaKnown RBP18.92■□□□□ 0.62
SS18-211ENST00000578954 JAG1P78504 1218 aa18.92■□□□□ 0.62
SS18-211ENST00000578954 ST3GAL1Q11201 340 aa18.92■□□□□ 0.62
SS18-211ENST00000578954 USP48Q86UV5 1035 aa18.92■□□□□ 0.62
SS18-211ENST00000578954 CDCA5Q96FF9 252 aa18.92■□□□□ 0.62
SS18-211ENST00000578954 GLIS2Q9BZE0 524 aaPredicted RBP18.92■□□□□ 0.62
SS18-211ENST00000578954 KANSL2Q9H9L4 492 aa18.92■□□□□ 0.62
SS18-211ENST00000578954 ZBTB21Q9ULJ3 1066 aa18.92■□□□□ 0.62
SS18-211ENST00000578954 HPS5Q9UPZ3 1129 aa18.92■□□□□ 0.62
SS18-211ENST00000578954 CCDC69A6NI79 296 aa18.91■□□□□ 0.62
SS18-211ENST00000578954 CTNND1O60716 968 aaKnown RBP18.91■□□□□ 0.62
SS18-211ENST00000578954 DDAH1O94760 285 aa18.91■□□□□ 0.62
SS18-211ENST00000578954 GH2P01242 217 aa18.91■□□□□ 0.62
SS18-211ENST00000578954 SHROOM1Q2M3G4 852 aaPredicted RBP18.91■□□□□ 0.62
SS18-211ENST00000578954 ZNF654Q8IZM8 581 aa18.91■□□□□ 0.62
SS18-211ENST00000578954 GTF3C6Q969F1 213 aa18.91■□□□□ 0.62
SS18-211ENST00000578954 KLRG1Q96E93 195 aa18.91■□□□□ 0.62
SS18-211ENST00000578954 CABP5Q9NP86 173 aa18.91■□□□□ 0.62
SS18-211ENST00000578954 NYAP2Q9P242 653 aa18.91■□□□□ 0.62
SS18-211ENST00000578954 SYNPO2Q9UMS6 1093 aa18.91■□□□□ 0.62
SS18-211ENST00000578954 SLC12A7Q9Y666 1083 aa18.91■□□□□ 0.62
SS18-211ENST00000578954 DOCK1Q14185 1865 aa18.9■□□□□ 0.62
SS18-211ENST00000578954 MPHOSPH10O00566 681 aaKnown RBP18.9■□□□□ 0.62
SS18-211ENST00000578954 TTLL1O95922 423 aa18.9■□□□□ 0.62
SS18-211ENST00000578954 ASNSP08243 561 aa18.9■□□□□ 0.62
SS18-211ENST00000578954 TOP1P11387 765 aaKnown RBP18.9■□□□□ 0.62
SS18-211ENST00000578954 TROAPQ12815 778 aa18.9■□□□□ 0.62
SS18-211ENST00000578954 SEPT2Q15019 361 aa18.9■□□□□ 0.62
SS18-211ENST00000578954 NOL9Q5SY16 702 aaKnown RBP18.9■□□□□ 0.62
SS18-211ENST00000578954 NFXL1Q6ZNB6 911 aa18.9■□□□□ 0.62
SS18-211ENST00000578954 MKL1Q969V6 931 aa18.9■□□□□ 0.62
SS18-211ENST00000578954 INTS4Q96HW7 963 aaKnown RBP18.9■□□□□ 0.62
SS18-211ENST00000578954 TMEM47Q9BQJ4 181 aa18.9■□□□□ 0.62
SS18-211ENST00000578954 CLEC11AQ9Y240 323 aa18.9■□□□□ 0.62
SS18-211ENST00000578954 ATAD5Q96QE3 1844 aa18.9■□□□□ 0.62
SS18-211ENST00000578954 GOLGA8BA8MQT2 603 aa18.89■□□□□ 0.61
SS18-211ENST00000578954 ZBTB43O43298 467 aa18.89■□□□□ 0.61
SS18-211ENST00000578954 USP2O75604 605 aaPredicted RBP18.89■□□□□ 0.61
SS18-211ENST00000578954 MAP3K11Q16584 847 aa18.89■□□□□ 0.61
SS18-211ENST00000578954 DLK2Q6UY11 383 aa18.89■□□□□ 0.61
SS18-211ENST00000578954 SIAH1Q8IUQ4 282 aa18.89■□□□□ 0.61
SS18-211ENST00000578954 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.89■□□□□ 0.61
SS18-211ENST00000578954 MAP3K14Q99558 947 aa18.89■□□□□ 0.61
SS18-211ENST00000578954 SLKQ9H2G2 1235 aaPredicted RBP18.89■□□□□ 0.61
SS18-211ENST00000578954 KAT14Q9H8E8 782 aa18.89■□□□□ 0.61
SS18-211ENST00000578954 STX8Q9UNK0 236 aa18.89■□□□□ 0.61
SS18-211ENST00000578954 CALM1P0DP23 149 aa18.88■□□□□ 0.61
SS18-211ENST00000578954 CALM2P0DP24 149 aa18.88■□□□□ 0.61
SS18-211ENST00000578954 CALM3P0DP25 149 aa18.88■□□□□ 0.61
SS18-211ENST00000578954 NF2P35240 595 aa18.88■□□□□ 0.61
SS18-211ENST00000578954 ICA1Q05084 483 aa18.88■□□□□ 0.61
SS18-211ENST00000578954 SCRN1Q12765 414 aa18.88■□□□□ 0.61
SS18-211ENST00000578954 PPP2R5BQ15173 497 aa18.88■□□□□ 0.61
SS18-211ENST00000578954 MAP1SQ66K74 1059 aaPredicted RBP18.88■□□□□ 0.61
SS18-211ENST00000578954 SYNE3Q6ZMZ3 975 aa18.88■□□□□ 0.61
SS18-211ENST00000578954 CATIPQ7Z7H3 387 aa18.88■□□□□ 0.61
SS18-211ENST00000578954 CLEC10AQ8IUN9 316 aa18.88■□□□□ 0.61
SS18-211ENST00000578954 SCYL3Q8IZE3 742 aa18.88■□□□□ 0.61
SS18-211ENST00000578954 PNMA1Q8ND90 353 aa18.88■□□□□ 0.61
SS18-211ENST00000578954 ZNF526Q8TF50 670 aaPredicted RBP18.88■□□□□ 0.61
SS18-211ENST00000578954 CHMP4CQ96CF2 233 aa18.88■□□□□ 0.61
SS18-211ENST00000578954 PPP1R12BO60237 982 aaPredicted RBP18.87■□□□□ 0.61
SS18-211ENST00000578954 INPP5BP32019 993 aa18.87■□□□□ 0.61
SS18-211ENST00000578954 MICU3Q86XE3 530 aa18.87■□□□□ 0.61
SS18-211ENST00000578954 WRNIP1Q96S55 665 aa18.87■□□□□ 0.61
SS18-211ENST00000578954 FAM217BQ9NTX9 383 aaPredicted RBP18.87■□□□□ 0.61
SS18-211ENST00000578954 MYH4Q9Y623 1939 aa18.87■□□□□ 0.61
SS18-211ENST00000578954 OTOFQ9HC10 1997 aa18.86■□□□□ 0.61
SS18-211ENST00000578954 EEF2P13639 858 aaKnown RBP18.86■□□□□ 0.61
SS18-211ENST00000578954 SLC4A3P48751 1232 aa18.86■□□□□ 0.61
SS18-211ENST00000578954 METAP2P50579 478 aaKnown RBP eCLIP18.86■□□□□ 0.61
SS18-211ENST00000578954 STK3Q13188 491 aa18.86■□□□□ 0.61
SS18-211ENST00000578954 CCDC83Q8IWF9 413 aa18.86■□□□□ 0.61
SS18-211ENST00000578954 NECAB1Q8N987 351 aa18.86■□□□□ 0.61
SS18-211ENST00000578954 MYL10Q9BUA6 226 aa18.86■□□□□ 0.61
SS18-211ENST00000578954 CLIP2Q9UDT6 1046 aa18.86■□□□□ 0.61
SS18-211ENST00000578954 GOLGA8AA7E2F4 631 aa18.85■□□□□ 0.61
SS18-211ENST00000578954 SNHG28P0DPA3 235 aa18.85■□□□□ 0.61
SS18-211ENST00000578954 MAP3K9P80192 1104 aa18.85■□□□□ 0.61
SS18-211ENST00000578954 GRM4Q14833 912 aa18.85■□□□□ 0.61
SS18-211ENST00000578954 RAB3GAP1Q15042 981 aa18.85■□□□□ 0.61
SS18-211ENST00000578954 CHADLQ6NUI6 762 aa18.85■□□□□ 0.61
SS18-211ENST00000578954 FANCBQ8NB91 859 aa18.85■□□□□ 0.61
SS18-211ENST00000578954 LLPHQ9BRT6 129 aaKnown RBP18.85■□□□□ 0.61
SS18-211ENST00000578954 DAXXQ9UER7 740 aaPredicted RBP18.85■□□□□ 0.61
SS18-211ENST00000578954 DHX16O60231 1041 aaKnown RBP18.84■□□□□ 0.61
SS18-211ENST00000578954 CDC27P30260 824 aa18.84■□□□□ 0.61
SS18-211ENST00000578954 IREB2P48200 963 aaKnown RBP18.84■□□□□ 0.61
SS18-211ENST00000578954 CCT2P78371 535 aaKnown RBP18.84■□□□□ 0.61
SS18-211ENST00000578954 RTN1Q16799 776 aa18.84■□□□□ 0.61
SS18-211ENST00000578954 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.84■□□□□ 0.61
SS18-211ENST00000578954 RAB11FIP4Q86YS3 637 aa18.84■□□□□ 0.61
SS18-211ENST00000578954 LRRC47Q8N1G4 583 aaKnown RBP18.84■□□□□ 0.61
SS18-211ENST00000578954 GMCL1P1Q8NEA9 526 aa18.84■□□□□ 0.61
SS18-211ENST00000578954 SMARCC2Q8TAQ2 1214 aa18.84■□□□□ 0.61
SS18-211ENST00000578954 GPBP1L1Q9HC44 474 aaPredicted RBP18.84■□□□□ 0.61
SS18-211ENST00000578954 NCOA5Q9HCD5 579 aaKnown RBP18.84■□□□□ 0.61
SS18-211ENST00000578954 ARHGEF10LQ9HCE6 1279 aa18.84■□□□□ 0.61
SS18-211ENST00000578954 RBM28Q9NW13 759 aaKnown RBP18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms