RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 HSP90AB2PQ58FF8 381 aa7.98□□□□□ -1.13
VPS53-212ENST00000572259 TXNDC11Q6PKC3 985 aa7.98□□□□□ -1.13
VPS53-212ENST00000572259 SV2BQ7L1I2 683 aa7.98□□□□□ -1.13
VPS53-212ENST00000572259 TMEM39AQ9NV64 488 aa7.98□□□□□ -1.13
VPS53-212ENST00000572259 SPATA31A3Q5VYP0 1347 aa7.98□□□□□ -1.13
VPS53-212ENST00000572259 SBNO1A3KN83 1393 aa7.97□□□□□ -1.13
VPS53-212ENST00000572259 SOX1O00570 391 aaPredicted RBP7.97□□□□□ -1.13
VPS53-212ENST00000572259 GTF2F1P35269 517 aaKnown RBP eCLIP7.97□□□□□ -1.13
VPS53-212ENST00000572259 BAG6P46379 1132 aa7.97□□□□□ -1.13
VPS53-212ENST00000572259 FANCCQ00597 558 aa7.97□□□□□ -1.13
VPS53-212ENST00000572259 INSM1Q01101 510 aaPredicted RBP7.97□□□□□ -1.13
VPS53-212ENST00000572259 FAAP100Q0VG06 881 aa7.97□□□□□ -1.13
VPS53-212ENST00000572259 ZNF423Q2M1K9 1284 aa7.97□□□□□ -1.13
VPS53-212ENST00000572259 C9orf131Q5VYM1 1079 aa7.97□□□□□ -1.13
VPS53-212ENST00000572259 HS2ST1Q7LGA3 356 aa7.97□□□□□ -1.13
VPS53-212ENST00000572259 ANKRD24Q8TF21 1146 aa7.97□□□□□ -1.13
VPS53-212ENST00000572259 NECAB3Q96P71 396 aaPredicted RBP7.97□□□□□ -1.13
VPS53-212ENST00000572259 NOC4LQ9BVI4 516 aaKnown RBP7.97□□□□□ -1.13
VPS53-212ENST00000572259 TGIF2Q9GZN2 237 aa7.97□□□□□ -1.13
VPS53-212ENST00000572259 GGT7Q9UJ14 662 aa7.97□□□□□ -1.13
VPS53-212ENST00000572259 MKL2Q9ULH7 1088 aa7.97□□□□□ -1.13
VPS53-212ENST00000572259 NOP58Q9Y2X3 529 aaKnown RBP7.97□□□□□ -1.13
VPS53-212ENST00000572259 QRICH2Q9H0J4 1663 aa7.97□□□□□ -1.13
VPS53-212ENST00000572259 RALGAPBQ86X10 1494 aa7.96□□□□□ -1.13
VPS53-212ENST00000572259 PXDNQ92626 1479 aa7.96□□□□□ -1.13
VPS53-212ENST00000572259 SPDYE3A6NKU9 549 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 HMGB1P1B2RPK0 211 aaPredicted RBP7.96□□□□□ -1.14
VPS53-212ENST00000572259 FSCN2O14926 492 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 EIF4EBP3O60516 100 aaPredicted RBP7.96□□□□□ -1.14
VPS53-212ENST00000572259 B3GALT4O96024 378 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 RLBP1P12271 317 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 NID1P14543 1247 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 IRX6P78412 446 aaPredicted RBP7.96□□□□□ -1.14
VPS53-212ENST00000572259 GSTM4Q03013 218 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 C19orf57Q0VDD7 668 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 HSP90AB4PQ58FF6 505 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 SOGA3Q5TF21 947 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 PODNQ7Z5L7 613 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 NT5DC4Q86YG4 428 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 WNT8BQ93098 351 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 CCSER2Q9H7U1 834 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 SAMM50Q9Y512 469 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 ACEP12821 1306 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 PRR36Q9H6K5 1346 aa7.96□□□□□ -1.14
VPS53-212ENST00000572259 TNS3Q68CZ2 1445 aa7.95□□□□□ -1.14
VPS53-212ENST00000572259 SNRPNP63162 240 aaKnown RBP7.95□□□□□ -1.14
VPS53-212ENST00000572259 SETQ01105 290 aaPredicted RBP7.95□□□□□ -1.14
VPS53-212ENST00000572259 GNL2Q13823 731 aaKnown RBP7.95□□□□□ -1.14
VPS53-212ENST00000572259 ILDR2Q71H61 639 aa7.95□□□□□ -1.14
VPS53-212ENST00000572259 METTL16Q86W50 562 aaKnown RBP7.95□□□□□ -1.14
VPS53-212ENST00000572259 RELL1Q8IUW5 271 aa7.95□□□□□ -1.14
VPS53-212ENST00000572259 MAP4K3Q8IVH8 894 aa7.95□□□□□ -1.14
VPS53-212ENST00000572259 TEX2Q8IWB9 1127 aa7.95□□□□□ -1.14
VPS53-212ENST00000572259 NLGN1Q8N2Q7 840 aa7.95□□□□□ -1.14
VPS53-212ENST00000572259 SRA1Q9HD15 236 aaKnown RBP7.95□□□□□ -1.14
VPS53-212ENST00000572259 OSGEPQ9NPF4 335 aa7.95□□□□□ -1.14
VPS53-212ENST00000572259 AFF2P51816 1311 aa7.95□□□□□ -1.14
VPS53-212ENST00000572259 USP32Q8NFA0 1604 aa7.95□□□□□ -1.14
VPS53-212ENST00000572259 BRD4O60885 1362 aaPredicted RBP7.95□□□□□ -1.14
VPS53-212ENST00000572259 ATP7BP35670 1465 aa7.94□□□□□ -1.14
VPS53-212ENST00000572259 COL22A1Q8NFW1 1626 aaPredicted RBP7.94□□□□□ -1.14
VPS53-212ENST00000572259 GNB5O14775 395 aa7.94□□□□□ -1.14
VPS53-212ENST00000572259 PARNO95453 639 aaKnown RBP7.94□□□□□ -1.14
VPS53-212ENST00000572259 LMNB1P20700 586 aa7.94□□□□□ -1.14
VPS53-212ENST00000572259 RXRBP28702 533 aa7.94□□□□□ -1.14
VPS53-212ENST00000572259 RAC1P63000 192 aa7.94□□□□□ -1.14
VPS53-212ENST00000572259 COL9A3Q14050 684 aaPredicted RBP7.94□□□□□ -1.14
VPS53-212ENST00000572259 MAP3K11Q16584 847 aa7.94□□□□□ -1.14
VPS53-212ENST00000572259 RNF187Q5TA31 235 aaPredicted RBP7.94□□□□□ -1.14
VPS53-212ENST00000572259 SMC5Q8IY18 1101 aa7.94□□□□□ -1.14
VPS53-212ENST00000572259 BEND7Q8N7W2 519 aaPredicted RBP7.94□□□□□ -1.14
VPS53-212ENST00000572259 KLHL23Q8NBE8 558 aa7.94□□□□□ -1.14
VPS53-212ENST00000572259 CARD10Q9BWT7 1032 aa7.94□□□□□ -1.14
VPS53-212ENST00000572259 PLVAPQ9BX97 442 aa7.94□□□□□ -1.14
VPS53-212ENST00000572259 PIF1Q9H611 641 aa7.94□□□□□ -1.14
VPS53-212ENST00000572259 SOX17Q9H6I2 414 aaPredicted RBP7.94□□□□□ -1.14
VPS53-212ENST00000572259 RGS17Q9UGC6 210 aaPredicted RBP7.94□□□□□ -1.14
VPS53-212ENST00000572259 USP21Q9UK80 565 aa7.94□□□□□ -1.14
VPS53-212ENST00000572259 POLR3AO14802 1390 aaPredicted RBP7.94□□□□□ -1.14
VPS53-212ENST00000572259 PPIP5K1Q6PFW1 1433 aa7.94□□□□□ -1.14
VPS53-212ENST00000572259 ST20-MTHFSA0A0A6YYL1 179 aa7.93□□□□□ -1.14
VPS53-212ENST00000572259 CCDC194A0A1B0GVG4 234 aa7.93□□□□□ -1.14
VPS53-212ENST00000572259 ENC1O14682 589 aa7.93□□□□□ -1.14
VPS53-212ENST00000572259 EIF3JO75822 258 aaKnown RBP7.93□□□□□ -1.14
VPS53-212ENST00000572259 CELA3AP09093 270 aa7.93□□□□□ -1.14
VPS53-212ENST00000572259 HOXB4P17483 251 aaPredicted RBP7.93□□□□□ -1.14
VPS53-212ENST00000572259 TMF1P82094 1093 aa7.93□□□□□ -1.14
VPS53-212ENST00000572259 TRIM28Q13263 835 aaKnown RBP7.93□□□□□ -1.14
VPS53-212ENST00000572259 PWP1Q13610 501 aa7.93□□□□□ -1.14
VPS53-212ENST00000572259 LINC00114Q6XXX2 140 aa7.93□□□□□ -1.14
VPS53-212ENST00000572259 HDGFL2Q7Z4V5 671 aaPredicted RBP7.93□□□□□ -1.14
VPS53-212ENST00000572259 DTWD1Q8N5C7 304 aa7.93□□□□□ -1.14
VPS53-212ENST00000572259 GMLQ99445 158 aa7.93□□□□□ -1.14
VPS53-212ENST00000572259 ZSWIM4Q9H7M6 989 aa7.93□□□□□ -1.14
VPS53-212ENST00000572259 CAPN10Q9HC96 672 aa7.93□□□□□ -1.14
VPS53-212ENST00000572259 TRPC5Q9UL62 973 aaPredicted RBP7.93□□□□□ -1.14
VPS53-212ENST00000572259 LRP6O75581 1613 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 CYP11A1P05108 521 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 NME2P22392 152 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 HSD3B2P26439 372 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms