RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 ATP8B2P98198 1209 aa23.47■■□□□ 1.35
NUP88-203ENST00000572019 OS9Q13438 667 aaPredicted RBP23.47■■□□□ 1.35
NUP88-203ENST00000572019 GPR153Q6NV75 609 aa23.47■■□□□ 1.35
NUP88-203ENST00000572019 TATDN1Q6P1N9 297 aa23.47■■□□□ 1.35
NUP88-203ENST00000572019 EAF2Q96CJ1 260 aaPredicted RBP23.47■■□□□ 1.35
NUP88-203ENST00000572019 ZNF512BQ96KM6 892 aaPredicted RBP23.47■■□□□ 1.35
NUP88-203ENST00000572019 C12orf42Q96LP6 360 aa23.47■■□□□ 1.35
NUP88-203ENST00000572019 GINM1Q9NU53 330 aa23.47■■□□□ 1.35
NUP88-203ENST00000572019 BTBD7Q9P203 1132 aa23.47■■□□□ 1.35
NUP88-203ENST00000572019 HLA-DOAP06340 250 aa23.46■■□□□ 1.35
NUP88-203ENST00000572019 MAP2K5Q13163 448 aa23.46■■□□□ 1.35
NUP88-203ENST00000572019 LAMA2P24043 3122 aaKnown RBP23.46■■□□□ 1.35
NUP88-203ENST00000572019 IDH1O75874 414 aaKnown RBP23.45■■□□□ 1.34
NUP88-203ENST00000572019 CCAR1Q8IX12 1150 aaKnown RBP23.45■■□□□ 1.34
NUP88-203ENST00000572019 MAGEB6Q8N7X4 407 aa23.45■■□□□ 1.34
NUP88-203ENST00000572019 TRPV1Q8NER1 839 aa23.45■■□□□ 1.34
NUP88-203ENST00000572019 NPLOC4Q8TAT6 608 aa23.45■■□□□ 1.34
NUP88-203ENST00000572019 FEZ1Q99689 392 aa23.45■■□□□ 1.34
NUP88-203ENST00000572019 UNC80Q8N2C7 3258 aa23.44■■□□□ 1.34
NUP88-203ENST00000572019 VCAM1P19320 739 aa23.44■■□□□ 1.34
NUP88-203ENST00000572019 GUCY1A2P33402 732 aa23.44■■□□□ 1.34
NUP88-203ENST00000572019 RAB3GAP1Q15042 981 aa23.44■■□□□ 1.34
NUP88-203ENST00000572019 CATSPERGQ6ZRH7 1159 aa23.44■■□□□ 1.34
NUP88-203ENST00000572019 TRMT44Q8IYL2 757 aaKnown RBP23.44■■□□□ 1.34
NUP88-203ENST00000572019 STXBP5LQ9Y2K9 1186 aa23.44■■□□□ 1.34
NUP88-203ENST00000572019 RABGAP1Q9Y3P9 1069 aa23.44■■□□□ 1.34
NUP88-203ENST00000572019 USP17L15C9J2P7 530 aa23.43■■□□□ 1.34
NUP88-203ENST00000572019 USP17L13C9JLJ4 530 aa23.43■■□□□ 1.34
NUP88-203ENST00000572019 USP17L11C9JVI0 530 aa23.43■■□□□ 1.34
NUP88-203ENST00000572019 USP17L18D6R9N7 530 aa23.43■■□□□ 1.34
NUP88-203ENST00000572019 USP17L22D6RA61 530 aa23.43■■□□□ 1.34
NUP88-203ENST00000572019 USP17L17D6RBQ6 530 aa23.43■■□□□ 1.34
NUP88-203ENST00000572019 USP17L19D6RCP7 530 aa23.43■■□□□ 1.34
NUP88-203ENST00000572019 USP17L20D6RJB6 530 aa23.43■■□□□ 1.34
NUP88-203ENST00000572019 RLBP1P12271 317 aa23.43■■□□□ 1.34
NUP88-203ENST00000572019 SHMT1P34896 483 aa23.43■■□□□ 1.34
NUP88-203ENST00000572019 PLCD1P51178 756 aa23.43■■□□□ 1.34
NUP88-203ENST00000572019 USP17L24Q0WX57 530 aa23.43■■□□□ 1.34
NUP88-203ENST00000572019 WDR78Q5VTH9 848 aa23.43■■□□□ 1.34
NUP88-203ENST00000572019 EDC3Q96F86 508 aaKnown RBP23.43■■□□□ 1.34
NUP88-203ENST00000572019 NOP58Q9Y2X3 529 aaKnown RBP23.43■■□□□ 1.34
NUP88-203ENST00000572019 PTPREP23469 700 aa23.42■■□□□ 1.34
NUP88-203ENST00000572019 CYP2C19P33261 490 aa23.42■■□□□ 1.34
NUP88-203ENST00000572019 USP5P45974 858 aa23.42■■□□□ 1.34
NUP88-203ENST00000572019 GTF3C2Q8WUA4 911 aaPredicted RBP23.42■■□□□ 1.34
NUP88-203ENST00000572019 SENP6Q9GZR1 1112 aaPredicted RBP23.42■■□□□ 1.34
NUP88-203ENST00000572019 SERPINB13Q9UIV8 391 aa23.42■■□□□ 1.34
NUP88-203ENST00000572019 A0A0G2JMZ2 1700 aa23.42■■□□□ 1.34
NUP88-203ENST00000572019 PARP14Q460N5 1801 aa23.41■■□□□ 1.34
NUP88-203ENST00000572019 SPDYE16A6NNV3 312 aaPredicted RBP23.41■■□□□ 1.34
NUP88-203ENST00000572019 IGHA2P01877 340 aa23.41■■□□□ 1.34
NUP88-203ENST00000572019 ZKSCAN2Q63HK3 967 aa23.41■■□□□ 1.34
NUP88-203ENST00000572019 KIAA1683Q9H0B3 1180 aa23.41■■□□□ 1.34
NUP88-203ENST00000572019 EHD4Q9H223 541 aa23.41■■□□□ 1.34
NUP88-203ENST00000572019 MYH8P13535 1937 aa23.4■■□□□ 1.34
NUP88-203ENST00000572019 ZNFX1Q9P2E3 1918 aaKnown RBP23.4■■□□□ 1.34
NUP88-203ENST00000572019 ATN1P54259 1190 aaPredicted RBP23.4■■□□□ 1.34
NUP88-203ENST00000572019 GRB14Q14449 540 aa23.4■■□□□ 1.34
NUP88-203ENST00000572019 ABCB5Q2M3G0 1257 aa23.4■■□□□ 1.34
NUP88-203ENST00000572019 CERKLQ49MI3 558 aaPredicted RBP23.4■■□□□ 1.34
NUP88-203ENST00000572019 RPAP3Q9H6T3 665 aaPredicted RBP23.4■■□□□ 1.34
NUP88-203ENST00000572019 CWC22Q9HCG8 908 aaKnown RBP23.4■■□□□ 1.34
NUP88-203ENST00000572019 DDX20Q9UHI6 824 aaKnown RBP23.4■■□□□ 1.34
NUP88-203ENST00000572019 ZNF236Q9UL36 1845 aa23.4■■□□□ 1.34
NUP88-203ENST00000572019 A0A1W2PRG0 241 aa23.39■■□□□ 1.33
NUP88-203ENST00000572019 SLC15A5A6NIM6 579 aa23.39■■□□□ 1.33
NUP88-203ENST00000572019 SEPT2Q15019 361 aa23.39■■□□□ 1.33
NUP88-203ENST00000572019 KIAA1755Q5JYT7 1200 aa23.39■■□□□ 1.33
NUP88-203ENST00000572019 GUCD1Q96NT3 240 aa23.39■■□□□ 1.33
NUP88-203ENST00000572019 RIOK1Q9BRS2 568 aaKnown RBP23.39■■□□□ 1.33
NUP88-203ENST00000572019 SMCHD1A6NHR9 2005 aa23.38■■□□□ 1.33
NUP88-203ENST00000572019 BAZ2AQ9UIF9 1905 aaKnown RBP23.38■■□□□ 1.33
NUP88-203ENST00000572019 HOXC6P09630 235 aa23.38■■□□□ 1.33
NUP88-203ENST00000572019 CNGA1P29973 690 aa23.38■■□□□ 1.33
NUP88-203ENST00000572019 MFSD14CQ5VZR4 134 aa23.38■■□□□ 1.33
NUP88-203ENST00000572019 LBX2Q6XYB7 198 aa23.38■■□□□ 1.33
NUP88-203ENST00000572019 COL11A1P12107 1806 aaPredicted RBP23.38■■□□□ 1.33
NUP88-203ENST00000572019 CCNA1P78396 465 aa23.37■■□□□ 1.33
NUP88-203ENST00000572019 GABPAQ06546 454 aa23.37■■□□□ 1.33
NUP88-203ENST00000572019 ANO1Q5XXA6 986 aa23.37■■□□□ 1.33
NUP88-203ENST00000572019 FAM161BQ96MY7 647 aa23.37■■□□□ 1.33
NUP88-203ENST00000572019 POTEB2H3BUK9 544 aa23.36■■□□□ 1.33
NUP88-203ENST00000572019 CYBAP13498 195 aa23.36■■□□□ 1.33
NUP88-203ENST00000572019 ATP2B2Q01814 1243 aa23.36■■□□□ 1.33
NUP88-203ENST00000572019 EXOC6BQ9Y2D4 811 aa23.36■■□□□ 1.33
NUP88-203ENST00000572019 EYSQ5T1H1 3165 aa23.36■■□□□ 1.33
NUP88-203ENST00000572019 CCER2I3L3R5 266 aa23.35■■□□□ 1.33
NUP88-203ENST00000572019 CYP2D6P10635 497 aa23.35■■□□□ 1.33
NUP88-203ENST00000572019 USP14P54578 494 aa23.35■■□□□ 1.33
NUP88-203ENST00000572019 GJC2Q5T442 439 aaPredicted RBP23.35■■□□□ 1.33
NUP88-203ENST00000572019 CLEC10AQ8IUN9 316 aa23.35■■□□□ 1.33
NUP88-203ENST00000572019 ITPRIPQ8IWB1 547 aa23.35■■□□□ 1.33
NUP88-203ENST00000572019 SLC44A5Q8NCS7 719 aa23.35■■□□□ 1.33
NUP88-203ENST00000572019 LPAR1Q92633 364 aa23.35■■□□□ 1.33
NUP88-203ENST00000572019 MOV10L1Q9BXT6 1211 aaKnown RBP23.35■■□□□ 1.33
NUP88-203ENST00000572019 SMIM22K7EJ46 135 aa23.34■■□□□ 1.33
NUP88-203ENST00000572019 IGSF3O75054 1194 aa23.34■■□□□ 1.33
NUP88-203ENST00000572019 GLRX3O76003 335 aaKnown RBP23.34■■□□□ 1.33
NUP88-203ENST00000572019 RTP1P59025 263 aa23.34■■□□□ 1.33
NUP88-203ENST00000572019 CEP85Q6P2H3 762 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms