RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-208ENST00000570874 ERAP2Q6P179 960 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 CEP85Q6P2H3 762 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 ZNF790Q6PG37 636 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 KIAA0907Q7Z7F0 614 aaPredicted RBP4.14□□□□□ -1.75
SMG6-208ENST00000570874 DAAM2Q86T65 1068 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 SPICE1Q8N0Z3 855 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 MYO1HQ8N1T3 1032 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 PGBD3Q8N328 593 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 FAM200AQ8TCP9 573 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 FAM161BQ96MY7 647 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 MAP3K14Q99558 947 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 POLR3CQ9BUI4 534 aaPredicted RBP4.14□□□□□ -1.75
SMG6-208ENST00000570874 STK31Q9BXU1 1019 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.14□□□□□ -1.75
SMG6-208ENST00000570874 CSRNP2Q9H175 543 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 RWDD1Q9H446 243 aaPredicted RBP4.14□□□□□ -1.75
SMG6-208ENST00000570874 CD248Q9HCU0 757 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 NGRNQ9NPE2 291 aaKnown RBP4.14□□□□□ -1.75
SMG6-208ENST00000570874 EMILIN3Q9NT22 766 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 BABAM1Q9NWV8 329 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 LUZP4Q9P127 313 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 SIRPGQ9P1W8 387 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 IP6K2Q9UHH9 426 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 PGAP2Q9UHJ9 254 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 USP16Q9Y5T5 823 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 GJA3Q9Y6H8 435 aa4.14□□□□□ -1.75
SMG6-208ENST00000570874 COL4A1P02462 1669 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 SCN7AQ01118 1682 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 ARAP2Q8WZ64 1704 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 PNMA6EA0A0J9YXQ4 647 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 POTECB2RU33 542 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 NBPF26B4DH59 902 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 GPR37L1O60883 481 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 PRPF40AO75400 957 aaKnown RBP4.13□□□□□ -1.75
SMG6-208ENST00000570874 IFIT2P09913 472 aaKnown RBP4.13□□□□□ -1.75
SMG6-208ENST00000570874 CCDC175P0C221 793 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 MYL6BP14649 208 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 DDIT3P35638 169 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 CDKN1CP49918 316 aaPredicted RBP4.13□□□□□ -1.75
SMG6-208ENST00000570874 GPSM2P81274 684 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 KCNC4Q03721 635 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 SLC20A2Q08357 652 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 TTF1Q15361 905 aaPredicted RBP4.13□□□□□ -1.75
SMG6-208ENST00000570874 PUM3Q15397 648 aaKnown RBP4.13□□□□□ -1.75
SMG6-208ENST00000570874 SWI5Q1ZZU3 235 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 CWF19L2Q2TBE0 894 aaKnown RBP4.13□□□□□ -1.75
SMG6-208ENST00000570874 SLFNL1Q499Z3 407 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 PPP4R3BQ5MIZ7 849 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 WDR45BQ5MNZ6 344 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 NBPF14Q5TI25 921 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 ARMC3Q5W041 872 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 C16orf87Q6PH81 154 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 CPLX2Q6PUV4 134 aaKnown RBP4.13□□□□□ -1.75
SMG6-208ENST00000570874 NFXL1Q6ZNB6 911 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 KRT26Q7Z3Y9 468 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 LRP10Q7Z4F1 713 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 C11orf74Q86VG3 221 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 RASSF3Q86WH2 238 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 HOMER1Q86YM7 354 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 RNF135Q8IUD6 432 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 KIAA0825Q8IV33 1275 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 C16orf71Q8IYS4 520 aaPredicted RBP4.13□□□□□ -1.75
SMG6-208ENST00000570874 NBPF15Q8N660 670 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 ANKRD44Q8N8A2 993 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 ANKRD42Q8N9B4 389 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 OTUD7AQ8TE49 926 aaPredicted RBP4.13□□□□□ -1.75
SMG6-208ENST00000570874 SH3TC2Q8TF17 1288 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 JARID2Q92833 1246 aaPredicted RBP4.13□□□□□ -1.75
SMG6-208ENST00000570874 PGBD4Q96DM1 585 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 DCAF5Q96JK2 942 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 MS4A4AQ96JQ5 239 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 PRKD2Q9BZL6 878 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 USP44Q9H0E7 712 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 DHX36Q9H2U1 1008 aaKnown RBP4.13□□□□□ -1.75
SMG6-208ENST00000570874 TAGLN3Q9UI15 199 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 MKL2Q9ULH7 1088 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 MAP3K2Q9Y2U5 619 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 LRRFIP2Q9Y608 721 aaKnown RBP4.13□□□□□ -1.75
SMG6-208ENST00000570874 SPATA31A1Q5TZJ5 1347 aa4.13□□□□□ -1.75
SMG6-208ENST00000570874 COL24A1Q17RW2 1714 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 BCL9LQ86UU0 1499 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 PI4KAP2A4QPH2 592 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 IQCA1LA6NCM1 817 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 ALG1L2C9J202 215 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 BHMG1C9JSJ3 638 aaPredicted RBP4.12□□□□□ -1.75
SMG6-208ENST00000570874 TOM1O60784 492 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 LILRB3O75022 631 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 TPPPO94811 219 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 HOXB7P09629 217 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 NAT2P11245 290 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 ATF4P18848 351 aaPredicted RBP4.12□□□□□ -1.75
SMG6-208ENST00000570874 RASA1P20936 1047 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 PMLP29590 882 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 HOXC13P31276 330 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 SCNN1AP37088 669 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 TRPC1P48995 793 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 CCT4P50991 539 aaKnown RBP4.12□□□□□ -1.75
SMG6-208ENST00000570874 ZBED6P86452 979 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 DAB2P98082 770 aa4.12□□□□□ -1.75
SMG6-208ENST00000570874 NFX1Q12986 1120 aaKnown RBP4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms