RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 HMGB1P09429 215 aaKnown RBP8.34□□□□□ -1.07
UBR1-208ENST00000569066 SLC6A19Q695T7 634 aa8.34□□□□□ -1.07
UBR1-208ENST00000569066 SMYD4Q8IYR2 804 aaPredicted RBP8.34□□□□□ -1.07
UBR1-208ENST00000569066 THAP3Q8WTV1 239 aaPredicted RBP8.34□□□□□ -1.07
UBR1-208ENST00000569066 APEX2Q9UBZ4 518 aa8.34□□□□□ -1.07
UBR1-208ENST00000569066 DYNC1LI2O43237 492 aaPredicted RBP8.33□□□□□ -1.08
UBR1-208ENST00000569066 CBFA2T2O43439 604 aa8.33□□□□□ -1.08
UBR1-208ENST00000569066 TRIM28Q13263 835 aaKnown RBP8.33□□□□□ -1.08
UBR1-208ENST00000569066 NCAPHQ15003 741 aa8.33□□□□□ -1.08
UBR1-208ENST00000569066 AXDND1Q5T1B0 1012 aaPredicted RBP8.33□□□□□ -1.08
UBR1-208ENST00000569066 YOD1Q5VVQ6 348 aaPredicted RBP8.33□□□□□ -1.08
UBR1-208ENST00000569066 FOXB2Q5VYV0 432 aa8.33□□□□□ -1.08
UBR1-208ENST00000569066 CDC37L1Q7L3B6 337 aa8.33□□□□□ -1.08
UBR1-208ENST00000569066 JMYQ8N9B5 988 aa8.33□□□□□ -1.08
UBR1-208ENST00000569066 MRPL18Q9H0U6 180 aaKnown RBP8.33□□□□□ -1.08
UBR1-208ENST00000569066 SUCOQ9UBS9 1254 aaKnown RBP8.33□□□□□ -1.08
UBR1-208ENST00000569066 ARMCX6Q7L4S7 300 aa8.33□□□□□ -1.08
UBR1-208ENST00000569066 FILIP1Q7Z7B0 1213 aa8.33□□□□□ -1.08
UBR1-208ENST00000569066 KIAA0907Q7Z7F0 614 aaPredicted RBP8.33□□□□□ -1.08
UBR1-208ENST00000569066 HOMER1Q86YM7 354 aa8.33□□□□□ -1.08
UBR1-208ENST00000569066 RIN3Q8TB24 985 aa8.33□□□□□ -1.08
UBR1-208ENST00000569066 GSX1Q9H4S2 264 aaPredicted RBP8.33□□□□□ -1.08
UBR1-208ENST00000569066 SSU72Q9NP77 194 aaKnown RBP8.33□□□□□ -1.08
UBR1-208ENST00000569066 SUSD2Q9UGT4 822 aa8.33□□□□□ -1.08
UBR1-208ENST00000569066 CD2APQ9Y5K6 639 aa8.33□□□□□ -1.08
UBR1-208ENST00000569066 F8W735 103 aaPredicted RBP8.32□□□□□ -1.08
UBR1-208ENST00000569066 GBP1P32455 592 aa8.32□□□□□ -1.08
UBR1-208ENST00000569066 PPP1R13LQ8WUF5 828 aa8.32□□□□□ -1.08
UBR1-208ENST00000569066 CYB5D2Q8WUJ1 264 aa8.32□□□□□ -1.08
UBR1-208ENST00000569066 CCDC74BQ96LY2 380 aa8.32□□□□□ -1.08
UBR1-208ENST00000569066 FGD4Q96M96 766 aa8.32□□□□□ -1.08
UBR1-208ENST00000569066 HAUS7Q99871 368 aa8.32□□□□□ -1.08
UBR1-208ENST00000569066 IFT57Q9NWB7 429 aa8.32□□□□□ -1.08
UBR1-208ENST00000569066 DAGLAQ9Y4D2 1042 aa8.32□□□□□ -1.08
UBR1-208ENST00000569066 ASMTLO95671 621 aa8.32□□□□□ -1.08
UBR1-208ENST00000569066 PMS1P54277 932 aaKnown RBP8.32□□□□□ -1.08
UBR1-208ENST00000569066 ENAMQ9NRM1 1142 aa8.32□□□□□ -1.08
UBR1-208ENST00000569066 KRBA1A5PL33 1030 aa8.31□□□□□ -1.08
UBR1-208ENST00000569066 GYS2P54840 703 aa8.31□□□□□ -1.08
UBR1-208ENST00000569066 CBX2Q14781 532 aaPredicted RBP8.31□□□□□ -1.08
UBR1-208ENST00000569066 PTPROQ16827 1216 aa8.31□□□□□ -1.08
UBR1-208ENST00000569066 CDPF1Q6NVV7 123 aa8.31□□□□□ -1.08
UBR1-208ENST00000569066 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.31□□□□□ -1.08
UBR1-208ENST00000569066 ANKRD13AQ8IZ07 590 aa8.31□□□□□ -1.08
UBR1-208ENST00000569066 CNTNAP5Q8WYK1 1306 aa8.31□□□□□ -1.08
UBR1-208ENST00000569066 TBX1O43435 398 aa8.31□□□□□ -1.08
UBR1-208ENST00000569066 CLEC3AO75596 197 aa8.31□□□□□ -1.08
UBR1-208ENST00000569066 CST3P01034 146 aaPredicted RBP8.31□□□□□ -1.08
UBR1-208ENST00000569066 GLB1P16278 677 aa8.31□□□□□ -1.08
UBR1-208ENST00000569066 SV2CQ496J9 727 aa8.31□□□□□ -1.08
UBR1-208ENST00000569066 SPATA9Q9BWV2 254 aa8.31□□□□□ -1.08
UBR1-208ENST00000569066 MKL2Q9ULH7 1088 aa8.31□□□□□ -1.08
UBR1-208ENST00000569066 L1CAMP32004 1257 aa8.3□□□□□ -1.08
UBR1-208ENST00000569066 C16orf86Q6ZW13 317 aa8.3□□□□□ -1.08
UBR1-208ENST00000569066 UBL7Q96S82 380 aaPredicted RBP8.3□□□□□ -1.08
UBR1-208ENST00000569066 SEMA6CQ9H3T2 930 aa8.3□□□□□ -1.08
UBR1-208ENST00000569066 USP21Q9UK80 565 aa8.3□□□□□ -1.08
UBR1-208ENST00000569066 SHOXO15266 292 aa8.29□□□□□ -1.08
UBR1-208ENST00000569066 GRIA2P42262 883 aa8.29□□□□□ -1.08
UBR1-208ENST00000569066 DCAF11Q8TEB1 546 aa8.29□□□□□ -1.08
UBR1-208ENST00000569066 FBLIM1Q8WUP2 373 aa8.29□□□□□ -1.08
UBR1-208ENST00000569066 PPP1R14AQ96A00 147 aa8.29□□□□□ -1.08
UBR1-208ENST00000569066 ARHGEF4Q9NR80 690 aa8.29□□□□□ -1.08
UBR1-208ENST00000569066 CLSTN1O94985 981 aa8.29□□□□□ -1.08
UBR1-208ENST00000569066 NFICP08651 508 aa8.29□□□□□ -1.08
UBR1-208ENST00000569066 CDK11BP21127 795 aaKnown RBP8.29□□□□□ -1.08
UBR1-208ENST00000569066 CCNFP41002 786 aa8.29□□□□□ -1.08
UBR1-208ENST00000569066 SGO2Q562F6 1265 aa8.29□□□□□ -1.08
UBR1-208ENST00000569066 FOXQ1Q9C009 403 aa8.29□□□□□ -1.08
UBR1-208ENST00000569066 MKRN2Q9H000 416 aaKnown RBP8.29□□□□□ -1.08
UBR1-208ENST00000569066 ACSS3Q9H6R3 686 aa8.29□□□□□ -1.08
UBR1-208ENST00000569066 COL17A1Q9UMD9 1497 aaPredicted RBP8.29□□□□□ -1.08
UBR1-208ENST00000569066 A0A1W2PQU0 124 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 LORP23490 312 aaPredicted RBP8.28□□□□□ -1.08
UBR1-208ENST00000569066 COL8A1P27658 744 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 ANKRD34AQ69YU3 496 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 TREML4Q6UXN2 200 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 ADCY4Q8NFM4 1077 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 EXOC2Q96KP1 924 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 FEZ1Q99689 392 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 MIPEPQ99797 713 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 RNF187Q5TA31 235 aaPredicted RBP8.28□□□□□ -1.08
UBR1-208ENST00000569066 CDH24Q86UP0 819 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 CCDC144CPQ8IYA2 1237 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 ZBTB38Q8NAP3 1195 aaPredicted RBP8.28□□□□□ -1.08
UBR1-208ENST00000569066 DNAJB8Q8NHS0 232 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 DHRS1Q96LJ7 313 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 KLHL25Q9H0H3 589 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 AKTIPQ9H8T0 292 aa8.28□□□□□ -1.08
UBR1-208ENST00000569066 SLITRK5O94991 958 aa8.27□□□□□ -1.09
UBR1-208ENST00000569066 CAP2P40123 477 aa8.27□□□□□ -1.09
UBR1-208ENST00000569066 CDK5R2Q13319 367 aa8.27□□□□□ -1.09
UBR1-208ENST00000569066 TMEM130Q8N3G9 435 aa8.27□□□□□ -1.09
UBR1-208ENST00000569066 ZNF513Q8N8E2 541 aaPredicted RBP8.27□□□□□ -1.09
UBR1-208ENST00000569066 ZNF451Q9Y4E5 1061 aa8.27□□□□□ -1.09
UBR1-208ENST00000569066 COL4A3BPQ9Y5P4 624 aa8.27□□□□□ -1.09
UBR1-208ENST00000569066 LRIG2O94898 1065 aa8.27□□□□□ -1.09
UBR1-208ENST00000569066 DALRD3Q5D0E6 543 aaKnown RBP8.27□□□□□ -1.09
UBR1-208ENST00000569066 FAM209AQ5JX71 171 aa8.27□□□□□ -1.09
UBR1-208ENST00000569066 KCT2Q8NC54 265 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms