RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ABI1Q8IZP0 508 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 AGBL5Q8NDL9 886 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 ZNF296Q8WUU4 475 aaPredicted RBP4.27□□□□□ -1.73
VPS35-208ENST00000568612 ACSF2Q96CM8 615 aaPredicted RBP4.27□□□□□ -1.73
VPS35-208ENST00000568612 MISP3Q96FF7 219 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 MKNK2Q9HBH9 465 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 REV1Q9UBZ9 1251 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 ADAM30Q9UKF2 790 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 PLAGL2Q9UPG8 496 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 MAPK8IP1Q9UQF2 711 aa4.27□□□□□ -1.73
VPS35-208ENST00000568612 NOP58Q9Y2X3 529 aaKnown RBP4.27□□□□□ -1.73
VPS35-208ENST00000568612 PRR33A8MZF0 331 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 IGF2BP3O00425 579 aaKnown RBP eCLIP4.26□□□□□ -1.73
VPS35-208ENST00000568612 HTR3BO95264 441 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 CD8BP10966 210 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 CAP2P40123 477 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 IKZF1Q13422 519 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 MLECQ14165 292 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 FAM214BQ7L5A3 538 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 USP48Q86UV5 1035 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 MCATQ8IVS2 390 aaKnown RBP4.26□□□□□ -1.73
VPS35-208ENST00000568612 PHACTR4Q8IZ21 702 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 MFSD4AQ8N468 514 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 RNF34Q969K3 372 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 MRRFQ96E11 262 aaKnown RBP4.26□□□□□ -1.73
VPS35-208ENST00000568612 BRMS1Q9HCU9 246 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 PAK6Q9NQU5 681 aaPredicted RBP4.26□□□□□ -1.73
VPS35-208ENST00000568612 UBP1Q9NZI7 540 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 VAV3Q9UKW4 847 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 POLR3KQ9Y2Y1 108 aaPredicted RBP4.26□□□□□ -1.73
VPS35-208ENST00000568612 PCDHB14Q9Y5E9 798 aa4.26□□□□□ -1.73
VPS35-208ENST00000568612 CHURC1-FNTBB4DL54 471 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 H3BS24 57 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 GARTP22102 1010 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 ETV3P41162 512 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 APOBRQ0VD83 1088 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 SEZ6Q53EL9 994 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 ZNF394Q53GI3 561 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 ANGEL2Q5VTE6 544 aaKnown RBP4.25□□□□□ -1.73
VPS35-208ENST00000568612 GK5Q6ZS86 529 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 SPRED2Q7Z698 418 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 KIAA0825Q8IV33 1275 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 SPACA3Q8IXA5 215 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 ASB11Q8WXH4 323 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 SPON2Q9BUD6 331 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 ADAMTS1Q9UHI8 967 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 PCDHGB7Q9Y5F8 929 aa4.25□□□□□ -1.73
VPS35-208ENST00000568612 CNTNAP4Q9C0A0 1308 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 RBAK-RBAKDNI3L0D1 243 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 RECKO95980 971 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 PTMAP06454 111 aaKnown RBP4.24□□□□□ -1.73
VPS35-208ENST00000568612 GBP1P32455 592 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 CRKP46108 304 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 CLCN7P51798 805 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 FANCCQ00597 558 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 NKPD1Q17RQ9 610 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 TMEM201Q5SNT2 666 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 NFXL1Q6ZNB6 911 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 PI4K2BQ8TCG2 481 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 CYB5D2Q8WUJ1 264 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 NKD1Q969G9 470 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 HSPA12BQ96MM6 686 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 USP35Q9P2H5 1018 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 CEP131Q9UPN4 1083 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 SNX11Q9Y5W9 270 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 ROBO2Q9HCK4 1378 aa4.24□□□□□ -1.73
VPS35-208ENST00000568612 SCAMP3O14828 347 aaKnown RBP4.23□□□□□ -1.73
VPS35-208ENST00000568612 GREM1O60565 184 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 RAG1P15918 1043 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 TAL1P17542 331 aaPredicted RBP4.23□□□□□ -1.73
VPS35-208ENST00000568612 MCCP23508 829 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 KIR3DL1P43629 444 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 ZNF165P49910 485 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 ZP2Q05996 745 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 ZNF792Q3KQV3 632 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 ARSHQ5FYA8 562 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 LDLRAD1Q5T700 205 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 FBXW10Q5XX13 1052 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 MCTP1Q6DN14 999 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 TMED8Q6PL24 325 aaPredicted RBP4.23□□□□□ -1.73
VPS35-208ENST00000568612 BAHD1Q8TBE0 780 aaPredicted RBP4.23□□□□□ -1.73
VPS35-208ENST00000568612 UBE2FQ969M7 185 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 CCDC74BQ96LY2 380 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 KIF2CQ99661 725 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 PLCD4Q9BRC7 762 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 TNKS2Q9H2K2 1166 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 RC3H2Q9HBD1 1191 aaKnown RBP4.23□□□□□ -1.73
VPS35-208ENST00000568612 PRDM7Q9NQW5 492 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 METTL5Q9NRN9 209 aaKnown RBP4.23□□□□□ -1.73
VPS35-208ENST00000568612 ZSWIM5Q9P217 1185 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 ADGRE2Q9UHX3 823 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 KCNG1Q9UIX4 513 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 CAPN6Q9Y6Q1 641 aa4.23□□□□□ -1.73
VPS35-208ENST00000568612 DNAJA2O60884 412 aa4.22□□□□□ -1.73
VPS35-208ENST00000568612 HSP90AA1P07900 732 aaKnown RBP4.22□□□□□ -1.73
VPS35-208ENST00000568612 ZNF865P0CJ78 1059 aaPredicted RBP4.22□□□□□ -1.73
VPS35-208ENST00000568612 FUT4P22083 530 aa4.22□□□□□ -1.73
VPS35-208ENST00000568612 C9orf131Q5VYM1 1079 aa4.22□□□□□ -1.73
VPS35-208ENST00000568612 RGS22Q8NE09 1264 aa4.22□□□□□ -1.73
VPS35-208ENST00000568612 DNAJB8Q8NHS0 232 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms