RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 USP17L15C9J2P7 530 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 USP17L13C9JLJ4 530 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 USP17L11C9JVI0 530 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 USP17L18D6R9N7 530 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 USP17L22D6RA61 530 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 USP17L17D6RBQ6 530 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 USP17L19D6RCP7 530 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 USP17L20D6RJB6 530 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 ATP5JP18859 108 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 MAPK4P31152 587 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 USP17L24Q0WX57 530 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 LCORLQ8N3X6 602 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 ACER1Q8TDN7 264 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 SDR42E1Q8WUS8 393 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 NUDT12Q9BQG2 462 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.46■□□□□ 0.71
CLN3-229ENST00000567963 DCP1AQ9NPI6 582 aaPredicted RBP19.46■□□□□ 0.71
CLN3-229ENST00000567963 NAV1Q8NEY1 1877 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 RPTORQ8N122 1335 aa19.46■□□□□ 0.71
CLN3-229ENST00000567963 CYP2B6P20813 491 aa19.45■□□□□ 0.7
CLN3-229ENST00000567963 GUCY1A2P33402 732 aa19.45■□□□□ 0.7
CLN3-229ENST00000567963 EVX2Q03828 476 aa19.45■□□□□ 0.7
CLN3-229ENST00000567963 TRIM32Q13049 653 aa19.45■□□□□ 0.7
CLN3-229ENST00000567963 CATSPERGQ6ZRH7 1159 aa19.45■□□□□ 0.7
CLN3-229ENST00000567963 TRIB2Q92519 343 aa19.45■□□□□ 0.7
CLN3-229ENST00000567963 PAGR1Q9BTK6 254 aa19.45■□□□□ 0.7
CLN3-229ENST00000567963 PORCNQ9H237 461 aa19.45■□□□□ 0.7
CLN3-229ENST00000567963 CEP290O15078 2479 aa19.45■□□□□ 0.7
CLN3-229ENST00000567963 XRCC5P13010 732 aaKnown RBP19.44■□□□□ 0.7
CLN3-229ENST00000567963 ADD2P35612 726 aa19.44■□□□□ 0.7
CLN3-229ENST00000567963 CCAR1Q8IX12 1150 aaKnown RBP19.44■□□□□ 0.7
CLN3-229ENST00000567963 SOCS4Q8WXH5 440 aa19.44■□□□□ 0.7
CLN3-229ENST00000567963 HAUS7Q99871 368 aa19.44■□□□□ 0.7
CLN3-229ENST00000567963 HMX1Q9NP08 348 aaPredicted RBP19.44■□□□□ 0.7
CLN3-229ENST00000567963 RABGAP1Q9Y3P9 1069 aa19.44■□□□□ 0.7
CLN3-229ENST00000567963 VCAM1P19320 739 aa19.43■□□□□ 0.7
CLN3-229ENST00000567963 FXR1P51114 621 aaKnown RBP eCLIP19.43■□□□□ 0.7
CLN3-229ENST00000567963 SEPT2Q15019 361 aa19.43■□□□□ 0.7
CLN3-229ENST00000567963 SLFNL1Q499Z3 407 aa19.43■□□□□ 0.7
CLN3-229ENST00000567963 GPR142Q7Z601 462 aa19.43■□□□□ 0.7
CLN3-229ENST00000567963 USP6NLQ92738 828 aa19.43■□□□□ 0.7
CLN3-229ENST00000567963 LRRCC1Q9C099 1032 aa19.43■□□□□ 0.7
CLN3-229ENST00000567963 ARMT1Q9H993 441 aa19.43■□□□□ 0.7
CLN3-229ENST00000567963 CNMDO75829 334 aa19.42■□□□□ 0.7
CLN3-229ENST00000567963 MORN1Q5T089 497 aa19.42■□□□□ 0.7
CLN3-229ENST00000567963 PAWRQ96IZ0 340 aaKnown RBP19.42■□□□□ 0.7
CLN3-229ENST00000567963 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.42■□□□□ 0.72e-6■■■■■ 40.7
CLN3-229ENST00000567963 NR2E3Q9Y5X4 410 aa19.42■□□□□ 0.7
CLN3-229ENST00000567963 RANBP2P49792 3224 aaKnown RBP19.42■□□□□ 0.7
CLN3-229ENST00000567963 PRKAB2O43741 272 aa19.41■□□□□ 0.7
CLN3-229ENST00000567963 MAP3K21Q5TCX8 1036 aa19.41■□□□□ 0.7
CLN3-229ENST00000567963 CHRDL2Q6WN34 429 aa19.41■□□□□ 0.7
CLN3-229ENST00000567963 LBX2Q6XYB7 198 aa19.41■□□□□ 0.7
CLN3-229ENST00000567963 PLEKHH3Q7Z736 793 aa19.41■□□□□ 0.7
CLN3-229ENST00000567963 TRMT44Q8IYL2 757 aaKnown RBP19.41■□□□□ 0.7
CLN3-229ENST00000567963 ATP8A2Q9NTI2 1148 aa19.41■□□□□ 0.7
CLN3-229ENST00000567963 A0A1W2PRG0 241 aa19.41■□□□□ 0.7
CLN3-229ENST00000567963 MPHOSPH10O00566 681 aaKnown RBP19.41■□□□□ 0.7
CLN3-229ENST00000567963 MBD4O95243 580 aa19.41■□□□□ 0.7
CLN3-229ENST00000567963 CYP2D6P10635 497 aa19.41■□□□□ 0.7
CLN3-229ENST00000567963 UBE3CQ15386 1083 aa19.41■□□□□ 0.7
CLN3-229ENST00000567963 ANKLE1Q8NAG6 615 aa19.41■□□□□ 0.7
CLN3-229ENST00000567963 RPAP3Q9H6T3 665 aaPredicted RBP19.41■□□□□ 0.7
CLN3-229ENST00000567963 SWAP70Q9UH65 585 aa19.41■□□□□ 0.7
CLN3-229ENST00000567963 SMARCA5O60264 1052 aaPredicted RBP19.4■□□□□ 0.7
CLN3-229ENST00000567963 EVI5O60447 810 aa19.4■□□□□ 0.7
CLN3-229ENST00000567963 CHGBP05060 677 aa19.4■□□□□ 0.7
CLN3-229ENST00000567963 RGS2P41220 211 aa19.4■□□□□ 0.7
CLN3-229ENST00000567963 CCNA1P78396 465 aa19.4■□□□□ 0.7
CLN3-229ENST00000567963 NECAB2Q7Z6G3 386 aa19.4■□□□□ 0.7
CLN3-229ENST00000567963 SLC44A5Q8NCS7 719 aa19.4■□□□□ 0.7
CLN3-229ENST00000567963 DIS3LQ8TF46 1054 aaKnown RBP19.4■□□□□ 0.7
CLN3-229ENST00000567963 DYNLL2Q96FJ2 89 aa19.4■□□□□ 0.7
CLN3-229ENST00000567963 PRKAR2AP13861 404 aaKnown RBP19.39■□□□□ 0.69
CLN3-229ENST00000567963 TMEM179Q6ZVK1 233 aa19.39■□□□□ 0.69
CLN3-229ENST00000567963 BTBD7Q9P203 1132 aa19.39■□□□□ 0.69
CLN3-229ENST00000567963 RBM27Q9P2N5 1060 aaKnown RBP19.39■□□□□ 0.69
CLN3-229ENST00000567963 BAZ2AQ9UIF9 1905 aaKnown RBP19.39■□□□□ 0.69
CLN3-229ENST00000567963 SZT2Q5T011 3432 aa19.38■□□□□ 0.69
CLN3-229ENST00000567963 MYH7P12883 1935 aa19.38■□□□□ 0.69
CLN3-229ENST00000567963 SPDYE16A6NNV3 312 aaPredicted RBP19.38■□□□□ 0.69
CLN3-229ENST00000567963 ZKSCAN1P17029 563 aaPredicted RBP19.38■□□□□ 0.69
CLN3-229ENST00000567963 CACNB2Q08289 660 aaPredicted RBP19.38■□□□□ 0.69
CLN3-229ENST00000567963 CCL14Q16627 93 aa19.38■□□□□ 0.69
CLN3-229ENST00000567963 APBA2Q99767 749 aa19.38■□□□□ 0.69
CLN3-229ENST00000567963 CWC22Q9HCG8 908 aaKnown RBP19.38■□□□□ 0.69
CLN3-229ENST00000567963 OGDHLQ9ULD0 1010 aa19.38■□□□□ 0.69
CLN3-229ENST00000567963 GLRX3O76003 335 aaKnown RBP19.37■□□□□ 0.69
CLN3-229ENST00000567963 MNX1P50219 401 aaPredicted RBP19.37■□□□□ 0.69
CLN3-229ENST00000567963 MAP2K5Q13163 448 aa19.37■□□□□ 0.69
CLN3-229ENST00000567963 COG2Q14746 738 aa19.37■□□□□ 0.69
CLN3-229ENST00000567963 C12orf60Q5U649 245 aa19.37■□□□□ 0.69
CLN3-229ENST00000567963 ZSCAN25Q6NSZ9 544 aa19.37■□□□□ 0.69
CLN3-229ENST00000567963 PUS7LQ9H0K6 701 aaKnown RBP19.37■□□□□ 0.69
CLN3-229ENST00000567963 MYH8P13535 1937 aa19.37■□□□□ 0.69
CLN3-229ENST00000567963 USP17L12C9JPN9 530 aa19.36■□□□□ 0.69
CLN3-229ENST00000567963 USP17L21D6R901 530 aa19.36■□□□□ 0.69
CLN3-229ENST00000567963 SIAH1Q8IUQ4 282 aa19.36■□□□□ 0.69
CLN3-229ENST00000567963 NBPF3Q9H094 633 aa19.36■□□□□ 0.69
CLN3-229ENST00000567963 PRO3102Q9H379 93 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms