RNA–Protein interactions for RNA: ENST00000567935.1

COMMD4-221, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 502 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-221ENST00000567935 CFHR5Q9BXR6 569 aa17.05■□□□□ 0.32
COMMD4-221ENST00000567935 LY9Q9HBG7 655 aa17.05■□□□□ 0.32
COMMD4-221ENST00000567935 CCDC196A0A1B0GTZ2 297 aa17.04■□□□□ 0.32
COMMD4-221ENST00000567935 USP17L12C9JPN9 530 aa17.04■□□□□ 0.32
COMMD4-221ENST00000567935 USP17L21D6R901 530 aa17.04■□□□□ 0.32
COMMD4-221ENST00000567935 PRPF40AO75400 957 aaKnown RBP17.04■□□□□ 0.32
COMMD4-221ENST00000567935 CTDNEP1O95476 244 aa17.04■□□□□ 0.32
COMMD4-221ENST00000567935 METAP2P50579 478 aaKnown RBP eCLIP17.04■□□□□ 0.32
COMMD4-221ENST00000567935 CCT2P78371 535 aaKnown RBP17.04■□□□□ 0.32
COMMD4-221ENST00000567935 PDE4BQ07343 736 aa17.04■□□□□ 0.32
COMMD4-221ENST00000567935 WTAPQ15007 396 aa17.04■□□□□ 0.32
COMMD4-221ENST00000567935 ANGEL2Q5VTE6 544 aaKnown RBP17.04■□□□□ 0.32
COMMD4-221ENST00000567935 CHRDL2Q6WN34 429 aa17.04■□□□□ 0.32
COMMD4-221ENST00000567935 NFXL1Q6ZNB6 911 aa17.04■□□□□ 0.32
COMMD4-221ENST00000567935 IQCA1Q86XH1 822 aa17.04■□□□□ 0.32
COMMD4-221ENST00000567935 TOMM22Q9NS69 142 aa17.04■□□□□ 0.32
COMMD4-221ENST00000567935 SLC12A7Q9Y666 1083 aa17.04■□□□□ 0.32
COMMD4-221ENST00000567935 ROBO3Q96MS0 1386 aa17.03■□□□□ 0.32
COMMD4-221ENST00000567935 G3V3G9 751 aa17.03■□□□□ 0.32
COMMD4-221ENST00000567935 DEKP35659 375 aaKnown RBP17.03■□□□□ 0.32
COMMD4-221ENST00000567935 USP5P45974 858 aa17.03■□□□□ 0.32
COMMD4-221ENST00000567935 KRT85P78386 507 aa17.03■□□□□ 0.32
COMMD4-221ENST00000567935 CCDC178Q5BJE1 867 aa17.03■□□□□ 0.32
COMMD4-221ENST00000567935 RRP12Q5JTH9 1297 aaKnown RBP17.03■□□□□ 0.32
COMMD4-221ENST00000567935 DCAF8Q5TAQ9 597 aa17.03■□□□□ 0.32
COMMD4-221ENST00000567935 ATL3Q6DD88 541 aa17.03■□□□□ 0.32
COMMD4-221ENST00000567935 ZNF287Q9HBT7 754 aa17.03■□□□□ 0.32
COMMD4-221ENST00000567935 GPHNQ9NQX3 736 aaPredicted RBP17.03■□□□□ 0.32
COMMD4-221ENST00000567935 SCAF8Q9UPN6 1271 aaKnown RBP17.03■□□□□ 0.32
COMMD4-221ENST00000567935 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.03■□□□□ 0.32
COMMD4-221ENST00000567935 NAV1Q8NEY1 1877 aa17.02■□□□□ 0.32
COMMD4-221ENST00000567935 GTF2IP78347 998 aa17.02■□□□□ 0.32
COMMD4-221ENST00000567935 NCOA5Q9HCD5 579 aaKnown RBP17.02■□□□□ 0.32
COMMD4-221ENST00000567935 JAG2Q9Y219 1238 aa17.02■□□□□ 0.32
COMMD4-221ENST00000567935 TCHHQ07283 1943 aa17.02■□□□□ 0.31
COMMD4-221ENST00000567935 STK36Q9NRP7 1315 aa17.01■□□□□ 0.31
COMMD4-221ENST00000567935 GOLGA8AA7E2F4 631 aa17.01■□□□□ 0.31
COMMD4-221ENST00000567935 CALM1P0DP23 149 aa17.01■□□□□ 0.31
COMMD4-221ENST00000567935 CALM2P0DP24 149 aa17.01■□□□□ 0.31
COMMD4-221ENST00000567935 CALM3P0DP25 149 aa17.01■□□□□ 0.31
COMMD4-221ENST00000567935 BTDP43251 543 aa17.01■□□□□ 0.31
COMMD4-221ENST00000567935 C12orf60Q5U649 245 aa17.01■□□□□ 0.31
COMMD4-221ENST00000567935 SYAP1Q96A49 352 aaPredicted RBP17.01■□□□□ 0.31
COMMD4-221ENST00000567935 ARMC5Q96C12 935 aa17.01■□□□□ 0.31
COMMD4-221ENST00000567935 DDX11Q96FC9 970 aa17.01■□□□□ 0.31
COMMD4-221ENST00000567935 SCAND2PQ9GZW5 306 aaPredicted RBP17.01■□□□□ 0.31
COMMD4-221ENST00000567935 MCM9Q9NXL9 1143 aa17.01■□□□□ 0.31
COMMD4-221ENST00000567935 ORC3Q9UBD5 711 aaPredicted RBP17.01■□□□□ 0.31
COMMD4-221ENST00000567935 TACC3Q9Y6A5 838 aa17.01■□□□□ 0.31
COMMD4-221ENST00000567935 ELP1O95163 1332 aa17■□□□□ 0.31
COMMD4-221ENST00000567935 RIMBP2O15034 1052 aa17■□□□□ 0.31
COMMD4-221ENST00000567935 ECE2O60344 883 aa17■□□□□ 0.31
COMMD4-221ENST00000567935 SREBF2Q12772 1141 aa17■□□□□ 0.31
COMMD4-221ENST00000567935 SEC23AQ15436 765 aa17■□□□□ 0.31
COMMD4-221ENST00000567935 DIXDC1Q155Q3 683 aa17■□□□□ 0.31
COMMD4-221ENST00000567935 SH3RF3Q8TEJ3 882 aaPredicted RBP17■□□□□ 0.31
COMMD4-221ENST00000567935 WASF1Q92558 559 aa17■□□□□ 0.31
COMMD4-221ENST00000567935 MRIQ9BWK5 157 aa17■□□□□ 0.31
COMMD4-221ENST00000567935 RBM27Q9P2N5 1060 aaKnown RBP17■□□□□ 0.31
COMMD4-221ENST00000567935 PTPN22Q9Y2R2 807 aa17■□□□□ 0.31
COMMD4-221ENST00000567935 CUL9Q8IWT3 2517 aa17■□□□□ 0.31
COMMD4-221ENST00000567935 RANBP2P49792 3224 aaKnown RBP16.99■□□□□ 0.31
COMMD4-221ENST00000567935 UBE2HP62256 183 aa16.99■□□□□ 0.31
COMMD4-221ENST00000567935 RESTQ13127 1097 aa16.99■□□□□ 0.31
COMMD4-221ENST00000567935 GRIK5Q16478 980 aa16.99■□□□□ 0.31
COMMD4-221ENST00000567935 DOK7Q18PE1 504 aa16.99■□□□□ 0.31
COMMD4-221ENST00000567935 L1TD1Q5T7N2 865 aaKnown RBP16.99■□□□□ 0.31
COMMD4-221ENST00000567935 PRAMEF18Q5VWM3 479 aa16.99■□□□□ 0.31
COMMD4-221ENST00000567935 HHIPL2Q6UWX4 724 aa16.99■□□□□ 0.31
COMMD4-221ENST00000567935 TEX11Q8IYF3 940 aa16.99■□□□□ 0.31
COMMD4-221ENST00000567935 ZSCAN10Q96SZ4 725 aaPredicted RBP16.99■□□□□ 0.31
COMMD4-221ENST00000567935 TNKSO95271 1327 aa16.98■□□□□ 0.31
COMMD4-221ENST00000567935 RANBP6O60518 1105 aaKnown RBP16.98■□□□□ 0.31
COMMD4-221ENST00000567935 DDAH1O94760 285 aa16.98■□□□□ 0.31
COMMD4-221ENST00000567935 IFNAR1P17181 557 aa16.98■□□□□ 0.31
COMMD4-221ENST00000567935 HDLBPQ00341 1268 aaKnown RBP16.98■□□□□ 0.31
COMMD4-221ENST00000567935 RTN1Q16799 776 aa16.98■□□□□ 0.31
COMMD4-221ENST00000567935 STRIP1Q5VSL9 837 aa16.98■□□□□ 0.31
COMMD4-221ENST00000567935 MICU3Q86XE3 530 aa16.98■□□□□ 0.31
COMMD4-221ENST00000567935 C8orf76Q96K31 380 aa16.98■□□□□ 0.31
COMMD4-221ENST00000567935 INCENPQ9NQS7 918 aa16.98■□□□□ 0.31
COMMD4-221ENST00000567935 CFAP45Q9UL16 551 aa16.98■□□□□ 0.31
COMMD4-221ENST00000567935 TAOK2Q9UL54 1235 aa16.98■□□□□ 0.31
COMMD4-221ENST00000567935 CEP290O15078 2479 aa16.98■□□□□ 0.31
COMMD4-221ENST00000567935 FOCADQ5VW36 1801 aa16.98■□□□□ 0.31
COMMD4-221ENST00000567935 CDK5RAP2Q96SN8 1893 aa16.97■□□□□ 0.31
COMMD4-221ENST00000567935 SCN9AQ15858 1988 aa16.97■□□□□ 0.31
COMMD4-221ENST00000567935 DDX60LQ5H9U9 1706 aaKnown RBP16.97■□□□□ 0.31
COMMD4-221ENST00000567935 FDPSP14324 419 aaKnown RBP16.97■□□□□ 0.31
COMMD4-221ENST00000567935 MNX1P50219 401 aaPredicted RBP16.97■□□□□ 0.31
COMMD4-221ENST00000567935 RHBDL3P58872 404 aa16.97■□□□□ 0.31
COMMD4-221ENST00000567935 DNM1Q05193 864 aaKnown RBP16.97■□□□□ 0.31
COMMD4-221ENST00000567935 CATIPQ7Z7H3 387 aa16.97■□□□□ 0.31
COMMD4-221ENST00000567935 TRIM22Q8IYM9 498 aa16.97■□□□□ 0.31
COMMD4-221ENST00000567935 ZNF654Q8IZM8 581 aa16.97■□□□□ 0.31
COMMD4-221ENST00000567935 RBM28Q9NW13 759 aaKnown RBP16.97■□□□□ 0.31
COMMD4-221ENST00000567935 CNPY2Q9Y2B0 182 aa16.97■□□□□ 0.31
COMMD4-221ENST00000567935 POLR3DP05423 398 aaPredicted RBP16.96■□□□□ 0.31
COMMD4-221ENST00000567935 VIL1P09327 827 aaKnown RBP16.96■□□□□ 0.31
COMMD4-221ENST00000567935 TTLL12Q14166 644 aaPredicted RBP16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms