RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 TRIM75PA6NK02 468 aa14.41□□□□□ -0.1
SF3B3-208ENST00000567250 USP17L10C9JJH3 530 aa14.41□□□□□ -0.1
SF3B3-208ENST00000567250 CA12O43570 354 aa14.41□□□□□ -0.1
SF3B3-208ENST00000567250 PRDM1O75626 825 aa14.41□□□□□ -0.1
SF3B3-208ENST00000567250 USP14P54578 494 aa14.41□□□□□ -0.1
SF3B3-208ENST00000567250 PTH1RQ03431 593 aa14.41□□□□□ -0.1
SF3B3-208ENST00000567250 FASTKD5Q7L8L6 764 aaKnown RBP14.41□□□□□ -0.1
SF3B3-208ENST00000567250 PRRT2Q7Z6L0 340 aaPredicted RBP14.41□□□□□ -0.1
SF3B3-208ENST00000567250 MAP4K1Q92918 833 aa14.41□□□□□ -0.1
SF3B3-208ENST00000567250 LSG1Q9H089 658 aaKnown RBP14.41□□□□□ -0.1
SF3B3-208ENST00000567250 CNNM2Q9H8M5 875 aa14.41□□□□□ -0.1
SF3B3-208ENST00000567250 KANSL2Q9H9L4 492 aa14.41□□□□□ -0.1
SF3B3-208ENST00000567250 ZCCHC17Q9NP64 241 aaKnown RBP14.41□□□□□ -0.1
SF3B3-208ENST00000567250 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.41□□□□□ -0.1
SF3B3-208ENST00000567250 RBM8AQ9Y5S9 174 aaKnown RBP14.41□□□□□ -0.1
SF3B3-208ENST00000567250 TESPA1A2RU30 521 aaPredicted RBP14.4□□□□□ -0.1
SF3B3-208ENST00000567250 C19orf81C9J6K1 198 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 SMIM22K7EJ46 135 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 EPB41L2O43491 1005 aaKnown RBP14.4□□□□□ -0.1
SF3B3-208ENST00000567250 FGRP09769 529 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 TM4SF4P48230 202 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 BACE1P56817 501 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 TRDNQ13061 729 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 SPP2Q13103 211 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 SEPT2Q15019 361 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 RNF20Q5VTR2 975 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 CCDC84Q86UT8 332 aaPredicted RBP14.4□□□□□ -0.1
SF3B3-208ENST00000567250 TBC1D10CQ8IV04 446 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 PROCA1Q8NCQ7 364 aaPredicted RBP14.4□□□□□ -0.1
SF3B3-208ENST00000567250 ESR2Q92731 530 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 MS4A4AQ96JQ5 239 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 KRT23Q9C075 422 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 TMOD4Q9NZQ9 345 aa14.4□□□□□ -0.1
SF3B3-208ENST00000567250 RANBP6O60518 1105 aaKnown RBP14.39□□□□□ -0.11
SF3B3-208ENST00000567250 PABPC4Q13310 644 aaKnown RBP eCLIP14.39□□□□□ -0.11
SF3B3-208ENST00000567250 MTMR2Q13614 643 aa14.39□□□□□ -0.11
SF3B3-208ENST00000567250 SHROOM1Q2M3G4 852 aaPredicted RBP14.39□□□□□ -0.11
SF3B3-208ENST00000567250 RRP12Q5JTH9 1297 aaKnown RBP14.39□□□□□ -0.11
SF3B3-208ENST00000567250 NEDD1Q8NHV4 660 aa14.39□□□□□ -0.11
SF3B3-208ENST00000567250 ZIC5Q96T25 663 aa14.39□□□□□ -0.11
SF3B3-208ENST00000567250 SAGE1Q9NXZ1 904 aa14.39□□□□□ -0.11
SF3B3-208ENST00000567250 CYP21A2P08686 494 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 GUCY1A2P33402 732 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 HMGCS2P54868 508 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 JAG1P78504 1218 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 TFAP4Q01664 338 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 SH3D19Q5HYK7 790 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 USP17L2Q6R6M4 530 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 GADL1Q6ZQY3 521 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 RALYLQ86SE5 291 aaKnown RBP14.38□□□□□ -0.11
SF3B3-208ENST00000567250 ANKRD23Q86SG2 305 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 IFNL1Q8IU54 200 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 BRI3BPQ8WY22 251 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 NBPF3Q9H094 633 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 KIAA1683Q9H0B3 1180 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 SYNPO2Q9UMS6 1093 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 NEDD4P46934 1319 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 PCNTO95613 3336 aa14.38□□□□□ -0.11
SF3B3-208ENST00000567250 TTLL1O95922 423 aa14.37□□□□□ -0.11
SF3B3-208ENST00000567250 ZKSCAN1P17029 563 aaPredicted RBP14.37□□□□□ -0.11
SF3B3-208ENST00000567250 ATP2B2Q01814 1243 aa14.37□□□□□ -0.11
SF3B3-208ENST00000567250 CCDC178Q5BJE1 867 aa14.37□□□□□ -0.11
SF3B3-208ENST00000567250 IQCA1Q86XH1 822 aa14.37□□□□□ -0.11
SF3B3-208ENST00000567250 C12orf42Q96LP6 360 aa14.37□□□□□ -0.11
SF3B3-208ENST00000567250 GOPCQ9HD26 462 aa14.37□□□□□ -0.11
SF3B3-208ENST00000567250 WBP1LQ9NX94 342 aa14.37□□□□□ -0.11
SF3B3-208ENST00000567250 NYAP2Q9P242 653 aa14.37□□□□□ -0.11
SF3B3-208ENST00000567250 PNMA3Q9UL41 463 aa14.37□□□□□ -0.11
SF3B3-208ENST00000567250 AGTPBP1Q9UPW5 1226 aa14.37□□□□□ -0.11
SF3B3-208ENST00000567250 SLC45A1Q9Y2W3 748 aa14.37□□□□□ -0.11
SF3B3-208ENST00000567250 PARP14Q460N5 1801 aa14.36□□□□□ -0.11
SF3B3-208ENST00000567250 IGKV6D-41A0A0C4DH26 115 aa14.36□□□□□ -0.11
SF3B3-208ENST00000567250 IGF2BP3O00425 579 aaKnown RBP eCLIP14.36□□□□□ -0.11
SF3B3-208ENST00000567250 MCCP23508 829 aa14.36□□□□□ -0.11
SF3B3-208ENST00000567250 TAF1CQ15572 869 aaPredicted RBP14.36□□□□□ -0.11
SF3B3-208ENST00000567250 FAM47AQ5JRC9 791 aa14.36□□□□□ -0.11
SF3B3-208ENST00000567250 NCOA7Q8NI08 942 aa14.36□□□□□ -0.11
SF3B3-208ENST00000567250 LPAR1Q92633 364 aa14.36□□□□□ -0.11
SF3B3-208ENST00000567250 CEP95Q96GE4 821 aa14.36□□□□□ -0.11
SF3B3-208ENST00000567250 PARK7Q99497 189 aaKnown RBP14.36□□□□□ -0.11
SF3B3-208ENST00000567250 MTMR4Q9NYA4 1195 aa14.36□□□□□ -0.11
SF3B3-208ENST00000567250 STX8Q9UNK0 236 aa14.36□□□□□ -0.11
SF3B3-208ENST00000567250 TMX2Q9Y320 296 aa14.36□□□□□ -0.11
SF3B3-208ENST00000567250 BTBD19C9JJ37 291 aa14.35□□□□□ -0.11
SF3B3-208ENST00000567250 SLC27A2O14975 620 aa14.35□□□□□ -0.11
SF3B3-208ENST00000567250 KDM4AO75164 1064 aa14.35□□□□□ -0.11
SF3B3-208ENST00000567250 HSPA1AP0DMV8 641 aaKnown RBP14.35□□□□□ -0.11
SF3B3-208ENST00000567250 HSPA1BP0DMV9 641 aaKnown RBP14.35□□□□□ -0.11
SF3B3-208ENST00000567250 EEF2P13639 858 aaKnown RBP14.35□□□□□ -0.11
SF3B3-208ENST00000567250 NECTIN1Q15223 517 aa14.35□□□□□ -0.11
SF3B3-208ENST00000567250 ZYXQ15942 572 aaKnown RBP14.35□□□□□ -0.11
SF3B3-208ENST00000567250 CREB3L3Q68CJ9 461 aa14.35□□□□□ -0.11
SF3B3-208ENST00000567250 CLEC10AQ8IUN9 316 aa14.35□□□□□ -0.11
SF3B3-208ENST00000567250 CFHR5Q9BXR6 569 aa14.35□□□□□ -0.11
SF3B3-208ENST00000567250 TCP11L1Q9NUJ3 509 aa14.35□□□□□ -0.11
SF3B3-208ENST00000567250 B4E1Z4 1266 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 E7EWF7 191 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 PDHXO00330 501 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 VCAM1P19320 739 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 OSBPP22059 807 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms