RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 USP17L22D6RA61 530 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 USP17L17D6RBQ6 530 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 USP17L19D6RCP7 530 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 USP17L20D6RJB6 530 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 ERC2O15083 957 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 PRKAB2O43741 272 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 USP17L24Q0WX57 530 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 MTFR1Q15390 333 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 LRRFIP1Q32MZ4 808 aaKnown RBP22.43■■□□□ 1.18
SMPD3-209ENST00000567223 SLFNL1Q499Z3 407 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 FEZ1Q99689 392 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 RBPJLQ9UBG7 517 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 ARPP21Q9UBL0 812 aaPredicted RBP22.43■■□□□ 1.18
SMPD3-209ENST00000567223 VCAM1P19320 739 aa22.42■■□□□ 1.18
SMPD3-209ENST00000567223 HDAC1Q13547 482 aaPredicted RBP22.42■■□□□ 1.18
SMPD3-209ENST00000567223 CATSPERGQ6ZRH7 1159 aa22.42■■□□□ 1.18
SMPD3-209ENST00000567223 C16orf86Q6ZW13 317 aa22.42■■□□□ 1.18
SMPD3-209ENST00000567223 APPBP2Q92624 585 aa22.42■■□□□ 1.18
SMPD3-209ENST00000567223 STRBPQ96SI9 672 aaKnown RBP22.42■■□□□ 1.18
SMPD3-209ENST00000567223 BCL11AQ9H165 835 aa22.42■■□□□ 1.18
SMPD3-209ENST00000567223 TXNRD2Q9NNW7 524 aa22.42■■□□□ 1.18
SMPD3-209ENST00000567223 RABGAP1Q9Y3P9 1069 aa22.42■■□□□ 1.18
SMPD3-209ENST00000567223 SALL3Q9BXA9 1300 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 GLRX3O76003 335 aaKnown RBP22.41■■□□□ 1.18
SMPD3-209ENST00000567223 ECM2O94769 699 aaPredicted RBP22.41■■□□□ 1.18
SMPD3-209ENST00000567223 CHGBP05060 677 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 CCL5P13501 91 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 MAPK4P31152 587 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 ERVK-9P63128 1117 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 ERVK-24P63145 666 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 EVX2Q03828 476 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 SEPT2Q15019 361 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 SBK1Q52WX2 424 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 POTEEQ6S8J3 1075 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 PI4K2BQ8TCG2 481 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 ACER1Q8TDN7 264 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 SOCS4Q8WXH5 440 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 GCC1Q96CN9 775 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 SHISA4Q96DD7 197 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 SLC4A4Q9Y6R1 1079 aa22.41■■□□□ 1.18
SMPD3-209ENST00000567223 BAZ2AQ9UIF9 1905 aaKnown RBP22.4■■□□□ 1.18
SMPD3-209ENST00000567223 USP17L12C9JPN9 530 aa22.4■■□□□ 1.18
SMPD3-209ENST00000567223 USP17L21D6R901 530 aa22.4■■□□□ 1.18
SMPD3-209ENST00000567223 RNF113AO15541 343 aaKnown RBP22.4■■□□□ 1.18
SMPD3-209ENST00000567223 CYP2D6P10635 497 aa22.4■■□□□ 1.18
SMPD3-209ENST00000567223 XRCC5P13010 732 aaKnown RBP22.4■■□□□ 1.18
SMPD3-209ENST00000567223 UBE2Q1Q7Z7E8 422 aa22.4■■□□□ 1.18
SMPD3-209ENST00000567223 PAK6Q9NQU5 681 aaPredicted RBP22.4■■□□□ 1.18
SMPD3-209ENST00000567223 PLXNB2O15031 1838 aa22.4■■□□□ 1.18
SMPD3-209ENST00000567223 MYH8P13535 1937 aa22.39■■□□□ 1.18
SMPD3-209ENST00000567223 ROBO3Q96MS0 1386 aa22.39■■□□□ 1.18
SMPD3-209ENST00000567223 INHAP05111 366 aa22.39■■□□□ 1.17
SMPD3-209ENST00000567223 GNAT2P19087 354 aa22.39■■□□□ 1.17
SMPD3-209ENST00000567223 CTR9Q6PD62 1173 aa22.39■■□□□ 1.17
SMPD3-209ENST00000567223 SLC44A5Q8NCS7 719 aa22.39■■□□□ 1.17
SMPD3-209ENST00000567223 LPAR1Q92633 364 aa22.39■■□□□ 1.17
SMPD3-209ENST00000567223 RNF208Q9H0X6 261 aa22.39■■□□□ 1.17
SMPD3-209ENST00000567223 DOCK3Q8IZD9 2030 aa22.38■■□□□ 1.17
SMPD3-209ENST00000567223 A0A1W2PRG0 241 aa22.38■■□□□ 1.17
SMPD3-209ENST00000567223 CDK8P49336 464 aa22.38■■□□□ 1.17
SMPD3-209ENST00000567223 TICAM2Q86XR7 235 aa22.38■■□□□ 1.17
SMPD3-209ENST00000567223 OSBP2Q969R2 916 aa22.38■■□□□ 1.17
SMPD3-209ENST00000567223 DYNLL2Q96FJ2 89 aa22.38■■□□□ 1.17
SMPD3-209ENST00000567223 CRBNQ96SW2 442 aa22.38■■□□□ 1.17
SMPD3-209ENST00000567223 SH2D4AQ9H788 454 aa22.38■■□□□ 1.17
SMPD3-209ENST00000567223 BIN2Q9UBW5 565 aaPredicted RBP22.38■■□□□ 1.17
SMPD3-209ENST00000567223 TMX2Q9Y320 296 aa22.38■■□□□ 1.17
SMPD3-209ENST00000567223 GSG1L2A8MUP6 293 aa22.37■■□□□ 1.17
SMPD3-209ENST00000567223 HMGCRP04035 888 aa22.37■■□□□ 1.17
SMPD3-209ENST00000567223 ELNP15502 786 aa22.37■■□□□ 1.17
SMPD3-209ENST00000567223 MX1P20591 662 aa22.37■■□□□ 1.17
SMPD3-209ENST00000567223 SIAH1Q8IUQ4 282 aa22.37■■□□□ 1.17
SMPD3-209ENST00000567223 TRMT44Q8IYL2 757 aaKnown RBP22.37■■□□□ 1.17
SMPD3-209ENST00000567223 USP6NLQ92738 828 aa22.37■■□□□ 1.17
SMPD3-209ENST00000567223 A0A0G2JMZ2 1700 aa22.37■■□□□ 1.17
SMPD3-209ENST00000567223 MPHOSPH10O00566 681 aaKnown RBP22.36■■□□□ 1.17
SMPD3-209ENST00000567223 SGPL1O95470 568 aa22.36■■□□□ 1.17
SMPD3-209ENST00000567223 CCNA1P78396 465 aa22.36■■□□□ 1.17
SMPD3-209ENST00000567223 ZYXQ15942 572 aaKnown RBP22.36■■□□□ 1.17
SMPD3-209ENST00000567223 Q3C1V9 767 aa22.36■■□□□ 1.17
SMPD3-209ENST00000567223 TSHZ3Q63HK5 1081 aa22.36■■□□□ 1.17
SMPD3-209ENST00000567223 U2AF1L4Q8WU68 220 aaKnown RBP22.36■■□□□ 1.17
SMPD3-209ENST00000567223 NUDT12Q9BQG2 462 aa22.36■■□□□ 1.17
SMPD3-209ENST00000567223 UNC93B1Q9H1C4 597 aa22.36■■□□□ 1.17
SMPD3-209ENST00000567223 RPAP3Q9H6T3 665 aaPredicted RBP22.36■■□□□ 1.17
SMPD3-209ENST00000567223 ARHGEF10LQ9HCE6 1279 aa22.36■■□□□ 1.17
SMPD3-209ENST00000567223 GREB1LQ9C091 1923 aaPredicted RBP22.35■■□□□ 1.17
SMPD3-209ENST00000567223 SPDYE16A6NNV3 312 aaPredicted RBP22.35■■□□□ 1.17
SMPD3-209ENST00000567223 GPAA1O43292 621 aa22.35■■□□□ 1.17
SMPD3-209ENST00000567223 CNMDO75829 334 aa22.35■■□□□ 1.17
SMPD3-209ENST00000567223 MYCP01106 439 aaPredicted RBP22.35■■□□□ 1.17
SMPD3-209ENST00000567223 AKR1B1P15121 316 aa22.35■■□□□ 1.17
SMPD3-209ENST00000567223 ICA1Q05084 483 aa22.35■■□□□ 1.17
SMPD3-209ENST00000567223 CRISPLD2Q9H0B8 497 aa22.35■■□□□ 1.17
SMPD3-209ENST00000567223 KANSL2Q9H9L4 492 aa22.35■■□□□ 1.17
SMPD3-209ENST00000567223 HOXC10Q9NYD6 342 aa22.35■■□□□ 1.17
SMPD3-209ENST00000567223 STAP2Q9UGK3 403 aa22.35■■□□□ 1.17
SMPD3-209ENST00000567223 CYP2D7A0A087X1C5 515 aa22.34■■□□□ 1.17
SMPD3-209ENST00000567223 COG2Q14746 738 aa22.34■■□□□ 1.17
SMPD3-209ENST00000567223 MORN1Q5T089 497 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms