RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 ZSCAN21Q9Y5A6 473 aaPredicted RBP15□□□□□ -0.01
CLK3-214ENST00000564096 NID2Q14112 1375 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 CCDC196A0A1B0GTZ2 297 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 GOLGA8AA7E2F4 631 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 POTECB2RU33 542 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 NMT2O60551 498 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 PFKFB2O60825 505 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 CDKL5O76039 1030 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 GDF11O95390 407 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 ASNSP08243 561 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 TOP1P11387 765 aaKnown RBP14.99□□□□□ -0.01
CLK3-214ENST00000564096 HOXD11P31277 338 aaPredicted RBP14.99□□□□□ -0.01
CLK3-214ENST00000564096 ME3Q16798 604 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 NBPF12Q5TAG4 269 aaPredicted RBP14.99□□□□□ -0.01
CLK3-214ENST00000564096 MIGA2Q7L4E1 593 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 USP48Q86UV5 1035 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 ZNF654Q8IZM8 581 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 ANKS1AQ92625 1134 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 CEP95Q96GE4 821 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 INTS4Q96HW7 963 aaKnown RBP14.99□□□□□ -0.01
CLK3-214ENST00000564096 SH2D4AQ9H788 454 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 MTMR4Q9NYA4 1195 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 ZBTB21Q9ULJ3 1066 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 SYNPO2Q9UMS6 1093 aa14.99□□□□□ -0.01
CLK3-214ENST00000564096 UTRNP46939 3433 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 IGKV6D-41A0A0C4DH26 115 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 CPLX1O14810 134 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 PPP1R12BO60237 982 aaPredicted RBP14.98□□□□□ -0.01
CLK3-214ENST00000564096 GH2P01242 217 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 STK3Q13188 491 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 CUL4AQ13619 759 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 RAB3GAP1Q15042 981 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 PPP2R5BQ15173 497 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 CCDC83Q8IWF9 413 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 PNMA1Q8ND90 353 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 CTCFLQ8NI51 663 aaPredicted RBP14.98□□□□□ -0.01
CLK3-214ENST00000564096 NKX2-3Q8TAU0 364 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 LARP6Q9BRS8 491 aaKnown RBP14.98□□□□□ -0.01
CLK3-214ENST00000564096 RRAGCQ9HB90 399 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 ARHGEF10LQ9HCE6 1279 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 GPHNQ9NQX3 736 aaPredicted RBP14.98□□□□□ -0.01
CLK3-214ENST00000564096 IL17RBQ9NRM6 502 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 RBM28Q9NW13 759 aaKnown RBP14.98□□□□□ -0.01
CLK3-214ENST00000564096 SSC5DA1L4H1 1573 aa14.98□□□□□ -0.01
CLK3-214ENST00000564096 GREB1LQ9C091 1923 aaPredicted RBP14.98□□□□□ -0.01
CLK3-214ENST00000564096 CTNND1O60716 968 aaKnown RBP14.97□□□□□ -0.01
CLK3-214ENST00000564096 LARGE1O95461 756 aa14.97□□□□□ -0.01
CLK3-214ENST00000564096 PDIA3P30101 505 aaKnown RBP14.97□□□□□ -0.01
CLK3-214ENST00000564096 KIF5BP33176 963 aa14.97□□□□□ -0.01
CLK3-214ENST00000564096 CAP2P40123 477 aa14.97□□□□□ -0.01
CLK3-214ENST00000564096 IREB2P48200 963 aaKnown RBP14.97□□□□□ -0.01
CLK3-214ENST00000564096 RTN1Q16799 776 aa14.97□□□□□ -0.01
CLK3-214ENST00000564096 ZNF526Q8TF50 670 aaPredicted RBP14.97□□□□□ -0.01
CLK3-214ENST00000564096 NUP133Q8WUM0 1156 aa14.97□□□□□ -0.01
CLK3-214ENST00000564096 CDCA5Q96FF9 252 aa14.97□□□□□ -0.01
CLK3-214ENST00000564096 WRNIP1Q96S55 665 aa14.97□□□□□ -0.01
CLK3-214ENST00000564096 LLPHQ9BRT6 129 aaKnown RBP14.97□□□□□ -0.01
CLK3-214ENST00000564096 BRPF3Q9ULD4 1205 aa14.97□□□□□ -0.01
CLK3-214ENST00000564096 KIF3AQ9Y496 699 aa14.97□□□□□ -0.01
CLK3-214ENST00000564096 NOVP48745 357 aa14.96□□□□□ -0.01
CLK3-214ENST00000564096 ATP2B2Q01814 1243 aa14.96□□□□□ -0.01
CLK3-214ENST00000564096 SCRN1Q12765 414 aa14.96□□□□□ -0.01
CLK3-214ENST00000564096 RCSD1Q6JBY9 416 aa14.96□□□□□ -0.01
CLK3-214ENST00000564096 SCYL3Q8IZE3 742 aa14.96□□□□□ -0.01
CLK3-214ENST00000564096 MAP3K14Q99558 947 aa14.96□□□□□ -0.01
CLK3-214ENST00000564096 TMEM47Q9BQJ4 181 aa14.96□□□□□ -0.01
CLK3-214ENST00000564096 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.96□□□□□ -0.01
CLK3-214ENST00000564096 NMRK2Q9NPI5 230 aa14.96□□□□□ -0.01
CLK3-214ENST00000564096 PICK1Q9NRD5 415 aa14.96□□□□□ -0.01
CLK3-214ENST00000564096 NYAP2Q9P242 653 aa14.96□□□□□ -0.01
CLK3-214ENST00000564096 SLURP2P0DP57 97 aa14.95□□□□□ -0.02
CLK3-214ENST00000564096 HMGN5P82970 282 aaKnown RBP14.95□□□□□ -0.02
CLK3-214ENST00000564096 SEPT2Q15019 361 aa14.95□□□□□ -0.02
CLK3-214ENST00000564096 NECAB1Q8N987 351 aa14.95□□□□□ -0.02
CLK3-214ENST00000564096 ZNF784Q8NCA9 323 aaPredicted RBP14.95□□□□□ -0.02
CLK3-214ENST00000564096 MYL10Q9BUA6 226 aa14.95□□□□□ -0.02
CLK3-214ENST00000564096 GLIS2Q9BZE0 524 aaPredicted RBP14.95□□□□□ -0.02
CLK3-214ENST00000564096 GPBP1L1Q9HC44 474 aaPredicted RBP14.95□□□□□ -0.02
CLK3-214ENST00000564096 SENP2Q9HC62 589 aa14.95□□□□□ -0.02
CLK3-214ENST00000564096 CWC22Q9HCG8 908 aaKnown RBP14.95□□□□□ -0.02
CLK3-214ENST00000564096 SMC3Q9UQE7 1217 aa14.95□□□□□ -0.02
CLK3-214ENST00000564096 PHF20L1A8MW92 1017 aa14.94□□□□□ -0.02
CLK3-214ENST00000564096 SLC4A3P48751 1232 aa14.94□□□□□ -0.02
CLK3-214ENST00000564096 GNAQP50148 359 aa14.94□□□□□ -0.02
CLK3-214ENST00000564096 CCT2P78371 535 aaKnown RBP14.94□□□□□ -0.02
CLK3-214ENST00000564096 TTLL12Q14166 644 aaPredicted RBP14.94□□□□□ -0.02
CLK3-214ENST00000564096 NOL9Q5SY16 702 aaKnown RBP14.94□□□□□ -0.02
CLK3-214ENST00000564096 PRAMEF18Q5VWM3 479 aa14.94□□□□□ -0.02
CLK3-214ENST00000564096 MAP1SQ66K74 1059 aaPredicted RBP14.94□□□□□ -0.02
CLK3-214ENST00000564096 LRRC47Q8N1G4 583 aaKnown RBP14.94□□□□□ -0.02
CLK3-214ENST00000564096 FEZ1Q99689 392 aa14.94□□□□□ -0.02
CLK3-214ENST00000564096 AS3MTQ9HBK9 375 aa14.94□□□□□ -0.02
CLK3-214ENST00000564096 GOPCQ9HD26 462 aa14.94□□□□□ -0.02
CLK3-214ENST00000564096 CLIP2Q9UDT6 1046 aa14.94□□□□□ -0.02
CLK3-214ENST00000564096 ZNF112Q9UJU3 913 aa14.94□□□□□ -0.02
CLK3-214ENST00000564096 HPS5Q9UPZ3 1129 aa14.94□□□□□ -0.02
CLK3-214ENST00000564096 CSADQ9Y600 493 aa14.94□□□□□ -0.02
CLK3-214ENST00000564096 DOCK1Q14185 1865 aa14.93□□□□□ -0.02
CLK3-214ENST00000564096 EEF2P13639 858 aaKnown RBP14.93□□□□□ -0.02
CLK3-214ENST00000564096 RXRAP19793 462 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms