RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SYNRGQ9UMZ2 1314 aa15.03■□□□□ -0
CLN3-210ENST00000563874 UBR2Q8IWV8 1755 aa15.03■□□□□ -0
CLN3-210ENST00000563874 TNS2Q63HR2 1409 aa15.03■□□□□ -0
CLN3-210ENST00000563874 TXLNAP40222 546 aa15.02■□□□□ -0
CLN3-210ENST00000563874 BCAMP50895 628 aa15.02■□□□□ -0
CLN3-210ENST00000563874 ZNF569Q5MCW4 686 aa15.02■□□□□ -0
CLN3-210ENST00000563874 ELOA2Q8IYF1 753 aaPredicted RBP15.02■□□□□ -0
CLN3-210ENST00000563874 TRIML1Q8N9V2 468 aa15.02■□□□□ -0
CLN3-210ENST00000563874 SDR42E1Q8WUS8 393 aa15.02■□□□□ -0
CLN3-210ENST00000563874 KAT6BQ8WYB5 2073 aa15.02□□□□□ -0.01
CLN3-210ENST00000563874 SYMPKQ92797 1274 aaKnown RBP15.02□□□□□ -0.01
CLN3-210ENST00000563874 UBAC1Q9BSL1 405 aa15.02□□□□□ -0.01
CLN3-210ENST00000563874 ZBTB1Q9Y2K1 713 aa15.02□□□□□ -0.01
CLN3-210ENST00000563874 ERCC5P28715 1186 aaPredicted RBP15.01□□□□□ -0.01
CLN3-210ENST00000563874 FAM193AP78312 1265 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 MCM6Q14566 821 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 KANK3Q6NY19 840 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 ZNF579Q8NAF0 562 aaKnown RBP15.01□□□□□ -0.01
CLN3-210ENST00000563874 ACRBPQ8NEB7 543 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 SPATA20Q8TB22 786 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 PLEKHG2Q9H7P9 1386 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 TRIM75PA6NK02 468 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 H3BQF6 201 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 KIF5CO60282 957 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 PDE8AO60658 829 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 CDC25AP30304 524 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 FXR1P51114 621 aaKnown RBP eCLIP15.01□□□□□ -0.01
CLN3-210ENST00000563874 EVA1CP58658 441 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 SPATA1Q5VX52 437 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 PAGE5Q96GU1 130 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 PANX2Q96RD6 677 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 CDC5LQ99459 802 aaKnown RBP15.01□□□□□ -0.01
CLN3-210ENST00000563874 NACAP1Q9BZK3 213 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 SUGCTQ9HAC7 445 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 CEP131Q9UPN4 1083 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 PARP4Q9UKK3 1724 aaKnown RBP15.01□□□□□ -0.01
CLN3-210ENST00000563874 ATP8B1O43520 1251 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 FGFR2P21802 821 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 ZNF174Q15697 407 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 CADPS2Q86UW7 1296 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 STAG1Q8WVM7 1258 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 BLZF1Q9H2G9 400 aa15.01□□□□□ -0.01
CLN3-210ENST00000563874 ADD3Q9UEY8 706 aaKnown RBP15.01□□□□□ -0.01
CLN3-210ENST00000563874 SLC5A1P13866 664 aa15□□□□□ -0.01
CLN3-210ENST00000563874 AKAP17AQ02040 695 aaKnown RBP15□□□□□ -0.01
CLN3-210ENST00000563874 DPYDQ12882 1025 aa15□□□□□ -0.01
CLN3-210ENST00000563874 CUL4BQ13620 913 aa15□□□□□ -0.01
CLN3-210ENST00000563874 KIF4BQ2VIQ3 1234 aa15□□□□□ -0.01
CLN3-210ENST00000563874 WWC2Q6AWC2 1192 aa15□□□□□ -0.01
CLN3-210ENST00000563874 LRP2BPQ9P2M1 347 aa15□□□□□ -0.01
CLN3-210ENST00000563874 TNKSO95271 1327 aa15□□□□□ -0.01
CLN3-210ENST00000563874 CCDC196A0A1B0GTZ2 297 aa15□□□□□ -0.01
CLN3-210ENST00000563874 RHOXF2BP0C7M4 288 aa15□□□□□ -0.01
CLN3-210ENST00000563874 HSPA2P54652 639 aa15□□□□□ -0.01
CLN3-210ENST00000563874 SRGAP1Q7Z6B7 1085 aa15□□□□□ -0.01
CLN3-210ENST00000563874 PNKPQ96T60 521 aa15□□□□□ -0.01
CLN3-210ENST00000563874 RHOXF2Q9BQY4 288 aa15□□□□□ -0.01
CLN3-210ENST00000563874 ANKZF1Q9H8Y5 726 aa15□□□□□ -0.01
CLN3-210ENST00000563874 TMEM51Q9NW97 253 aa15□□□□□ -0.01
CLN3-210ENST00000563874 CTNND2Q9UQB3 1225 aa15□□□□□ -0.01
CLN3-210ENST00000563874 MFAP3LO75121 409 aa14.99□□□□□ -0.01
CLN3-210ENST00000563874 GYPCP04921 128 aa14.99□□□□□ -0.01
CLN3-210ENST00000563874 SLC4A9Q96Q91 983 aa14.99□□□□□ -0.01
CLN3-210ENST00000563874 V9GY48 417 aaPredicted RBP14.99□□□□□ -0.01
CLN3-210ENST00000563874 CYP2D7A0A087X1C5 515 aa14.99□□□□□ -0.01
CLN3-210ENST00000563874 PLEKHA8P1O95397 391 aa14.99□□□□□ -0.01
CLN3-210ENST00000563874 PPARAQ07869 468 aa14.99□□□□□ -0.01
CLN3-210ENST00000563874 SLC35F6Q8N357 371 aa14.99□□□□□ -0.01
CLN3-210ENST00000563874 CARD10Q9BWT7 1032 aa14.99□□□□□ -0.01
CLN3-210ENST00000563874 RNF225M0QZC1 329 aaPredicted RBP14.98□□□□□ -0.01
CLN3-210ENST00000563874 CHRM1P11229 460 aaPredicted RBP14.98□□□□□ -0.01
CLN3-210ENST00000563874 ADGRA1Q86SQ6 560 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 VPS16Q9H269 839 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 AATFQ9NY61 560 aaKnown RBP eCLIP14.98□□□□□ -0.01
CLN3-210ENST00000563874 ABCF2Q9UG63 623 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 CDC23Q9UJX2 597 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 MAPK8IP1Q9UQF2 711 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 CCDC151A5D8V7 595 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 PPP1R3GB7ZBB8 358 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 CAPN2P17655 700 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 LMAN1P49257 510 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 MAPK8IP2Q13387 824 aaPredicted RBP14.98□□□□□ -0.01
CLN3-210ENST00000563874 PKN1Q16512 942 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 PDE11AQ9HCR9 933 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 COL5A2P05997 1499 aaPredicted RBP14.98□□□□□ -0.01
CLN3-210ENST00000563874 PBX1P40424 430 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 FILIP1LQ4L180 1135 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 CDKAL1Q5VV42 579 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 ADAM21Q9UKJ8 722 aa14.98□□□□□ -0.01
CLN3-210ENST00000563874 MROH5Q6ZUA9 1318 aa14.97□□□□□ -0.01
CLN3-210ENST00000563874 KRT2P35908 639 aa14.97□□□□□ -0.01
CLN3-210ENST00000563874 DZIP3Q86Y13 1208 aaKnown RBP14.97□□□□□ -0.01
CLN3-210ENST00000563874 TXLNBQ8N3L3 684 aa14.97□□□□□ -0.01
CLN3-210ENST00000563874 KCNG1Q9UIX4 513 aa14.97□□□□□ -0.01
CLN3-210ENST00000563874 LRP6O75581 1613 aa14.97□□□□□ -0.01
CLN3-210ENST00000563874 BAZ2BQ9UIF8 2168 aaKnown RBP14.97□□□□□ -0.01
CLN3-210ENST00000563874 N4BP3O15049 544 aa14.97□□□□□ -0.01
CLN3-210ENST00000563874 N4BP1O75113 896 aaKnown RBP14.97□□□□□ -0.01
CLN3-210ENST00000563874 CYP7A1P22680 504 aa14.97□□□□□ -0.01
CLN3-210ENST00000563874 RAD51AP2Q09MP3 1159 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms