RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 USP17L24Q0WX57 530 aa20.82■□□□□ 0.92
VPS9D1-203ENST00000563798 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.82■□□□□ 0.92
VPS9D1-203ENST00000563798 ATP8A2Q9NTI2 1148 aa20.82■□□□□ 0.92
VPS9D1-203ENST00000563798 NAV1Q8NEY1 1877 aa20.81■□□□□ 0.92
VPS9D1-203ENST00000563798 PLXNB2O15031 1838 aa20.81■□□□□ 0.92
VPS9D1-203ENST00000563798 XRCC5P13010 732 aaKnown RBP20.81■□□□□ 0.92
VPS9D1-203ENST00000563798 ERVK-9P63128 1117 aa20.81■□□□□ 0.92
VPS9D1-203ENST00000563798 ERVK-24P63145 666 aa20.81■□□□□ 0.92
VPS9D1-203ENST00000563798 RAB3GAP1Q15042 981 aa20.81■□□□□ 0.92
VPS9D1-203ENST00000563798 UBE3CQ15386 1083 aa20.81■□□□□ 0.92
VPS9D1-203ENST00000563798 Q3C1V9 767 aa20.81■□□□□ 0.92
VPS9D1-203ENST00000563798 LBX2Q6XYB7 198 aa20.81■□□□□ 0.92
VPS9D1-203ENST00000563798 CATSPERGQ6ZRH7 1159 aa20.81■□□□□ 0.92
VPS9D1-203ENST00000563798 SOCS4Q8WXH5 440 aa20.81■□□□□ 0.92
VPS9D1-203ENST00000563798 RABGAP1Q9Y3P9 1069 aa20.81■□□□□ 0.92
VPS9D1-203ENST00000563798 ACER1Q8TDN7 264 aa20.8■□□□□ 0.92
VPS9D1-203ENST00000563798 SDR42E1Q8WUS8 393 aa20.8■□□□□ 0.92
VPS9D1-203ENST00000563798 USP6NLQ92738 828 aa20.8■□□□□ 0.92
VPS9D1-203ENST00000563798 DEFB118Q96PH6 123 aa20.8■□□□□ 0.92
VPS9D1-203ENST00000563798 FEZ1Q99689 392 aa20.8■□□□□ 0.92
VPS9D1-203ENST00000563798 HTATIP2Q9BUP3 242 aa20.8■□□□□ 0.92
VPS9D1-203ENST00000563798 DCTPP1Q9H773 170 aa20.8■□□□□ 0.92
VPS9D1-203ENST00000563798 ARMT1Q9H993 441 aa20.8■□□□□ 0.92
VPS9D1-203ENST00000563798 SWAP70Q9UH65 585 aa20.8■□□□□ 0.92
VPS9D1-203ENST00000563798 FARP2O94887 1054 aaPredicted RBP20.79■□□□□ 0.92
VPS9D1-203ENST00000563798 VCAM1P19320 739 aa20.79■□□□□ 0.92
VPS9D1-203ENST00000563798 EVX2Q03828 476 aa20.79■□□□□ 0.92
VPS9D1-203ENST00000563798 NUDT12Q9BQG2 462 aa20.79■□□□□ 0.92
VPS9D1-203ENST00000563798 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.79■□□□□ 0.929e-6■■□□□ 13.2
VPS9D1-203ENST00000563798 RPTORQ8N122 1335 aa20.78■□□□□ 0.92
VPS9D1-203ENST00000563798 H0YGN5 161 aa20.78■□□□□ 0.92
VPS9D1-203ENST00000563798 PEX10O60683 326 aa20.78■□□□□ 0.92
VPS9D1-203ENST00000563798 CNMDO75829 334 aa20.78■□□□□ 0.92
VPS9D1-203ENST00000563798 MBD4O95243 580 aa20.78■□□□□ 0.92
VPS9D1-203ENST00000563798 SEPT2Q15019 361 aa20.78■□□□□ 0.92
VPS9D1-203ENST00000563798 MORN1Q5T089 497 aa20.78■□□□□ 0.92
VPS9D1-203ENST00000563798 MAP3K21Q5TCX8 1036 aa20.78■□□□□ 0.92
VPS9D1-203ENST00000563798 TRMT44Q8IYL2 757 aaKnown RBP20.78■□□□□ 0.92
VPS9D1-203ENST00000563798 PORCNQ9H237 461 aa20.78■□□□□ 0.92
VPS9D1-203ENST00000563798 PRKAB2O43741 272 aa20.77■□□□□ 0.92
VPS9D1-203ENST00000563798 TFRCP02786 760 aaKnown RBP20.77■□□□□ 0.92
VPS9D1-203ENST00000563798 ZYXQ15942 572 aaKnown RBP20.77■□□□□ 0.92
VPS9D1-203ENST00000563798 ZSCAN25Q6NSZ9 544 aa20.77■□□□□ 0.92
VPS9D1-203ENST00000563798 GPR142Q7Z601 462 aa20.77■□□□□ 0.92
VPS9D1-203ENST00000563798 ANKLE1Q8NAG6 615 aa20.77■□□□□ 0.92
VPS9D1-203ENST00000563798 TRIB2Q92519 343 aa20.77■□□□□ 0.92
VPS9D1-203ENST00000563798 ECHDC1Q9NTX5 307 aa20.77■□□□□ 0.92
VPS9D1-203ENST00000563798 SMARCA5O60264 1052 aaPredicted RBP20.76■□□□□ 0.91
VPS9D1-203ENST00000563798 CYP2D6P10635 497 aa20.76■□□□□ 0.91
VPS9D1-203ENST00000563798 SLFNL1Q499Z3 407 aa20.76■□□□□ 0.91
VPS9D1-203ENST00000563798 C12orf60Q5U649 245 aa20.76■□□□□ 0.91
VPS9D1-203ENST00000563798 TMEM179Q6ZVK1 233 aa20.76■□□□□ 0.91
VPS9D1-203ENST00000563798 PLEKHH3Q7Z736 793 aa20.76■□□□□ 0.91
VPS9D1-203ENST00000563798 DPF3Q92784 378 aa20.76■□□□□ 0.91
VPS9D1-203ENST00000563798 PAGR1Q9BTK6 254 aa20.76■□□□□ 0.91
VPS9D1-203ENST00000563798 HMX1Q9NP08 348 aaPredicted RBP20.76■□□□□ 0.91
VPS9D1-203ENST00000563798 A0A1W2PRG0 241 aa20.75■□□□□ 0.91
VPS9D1-203ENST00000563798 CYP2B6P20813 491 aa20.75■□□□□ 0.91
VPS9D1-203ENST00000563798 CCNA1P78396 465 aa20.75■□□□□ 0.91
VPS9D1-203ENST00000563798 TRIM32Q13049 653 aa20.75■□□□□ 0.91
VPS9D1-203ENST00000563798 CCDC17Q96LX7 622 aa20.75■□□□□ 0.91
VPS9D1-203ENST00000563798 BCL11AQ9H165 835 aa20.75■□□□□ 0.91
VPS9D1-203ENST00000563798 COLQQ9Y215 455 aaPredicted RBP20.75■□□□□ 0.91
VPS9D1-203ENST00000563798 SPDYE16A6NNV3 312 aaPredicted RBP20.74■□□□□ 0.91
VPS9D1-203ENST00000563798 CHGBP05060 677 aa20.74■□□□□ 0.91
VPS9D1-203ENST00000563798 RGS2P41220 211 aa20.74■□□□□ 0.91
VPS9D1-203ENST00000563798 SIAH1Q8IUQ4 282 aa20.74■□□□□ 0.91
VPS9D1-203ENST00000563798 CCAR1Q8IX12 1150 aaKnown RBP20.74■□□□□ 0.91
VPS9D1-203ENST00000563798 SLC44A5Q8NCS7 719 aa20.74■□□□□ 0.91
VPS9D1-203ENST00000563798 DYNLL2Q96FJ2 89 aa20.74■□□□□ 0.91
VPS9D1-203ENST00000563798 RPAP3Q9H6T3 665 aaPredicted RBP20.74■□□□□ 0.91
VPS9D1-203ENST00000563798 USP17L12C9JPN9 530 aa20.73■□□□□ 0.91
VPS9D1-203ENST00000563798 USP17L21D6R901 530 aa20.73■□□□□ 0.91
VPS9D1-203ENST00000563798 MPHOSPH10O00566 681 aaKnown RBP20.73■□□□□ 0.91
VPS9D1-203ENST00000563798 C16orf86Q6ZW13 317 aa20.73■□□□□ 0.91
VPS9D1-203ENST00000563798 PUS7LQ9H0K6 701 aaKnown RBP20.73■□□□□ 0.91
VPS9D1-203ENST00000563798 HOXC10Q9NYD6 342 aa20.73■□□□□ 0.91
VPS9D1-203ENST00000563798 BTBD7Q9P203 1132 aa20.73■□□□□ 0.91
VPS9D1-203ENST00000563798 NR2E3Q9Y5X4 410 aa20.73■□□□□ 0.91
VPS9D1-203ENST00000563798 CEP290O15078 2479 aa20.72■□□□□ 0.91
VPS9D1-203ENST00000563798 MYH7P12883 1935 aa20.72■□□□□ 0.91
VPS9D1-203ENST00000563798 GLRX3O76003 335 aaKnown RBP20.72■□□□□ 0.91
VPS9D1-203ENST00000563798 CDK8P49336 464 aa20.72■□□□□ 0.91
VPS9D1-203ENST00000563798 MAP2K5Q13163 448 aa20.72■□□□□ 0.91
VPS9D1-203ENST00000563798 COG2Q14746 738 aa20.72■□□□□ 0.91
VPS9D1-203ENST00000563798 AMOTL1Q8IY63 956 aa20.72■□□□□ 0.91
VPS9D1-203ENST00000563798 KBTBD3Q8NAB2 608 aa20.72■□□□□ 0.91
VPS9D1-203ENST00000563798 LPAR1Q92633 364 aa20.72■□□□□ 0.91
VPS9D1-203ENST00000563798 DDRGK1Q96HY6 314 aa20.72■□□□□ 0.91
VPS9D1-203ENST00000563798 APBA2Q99767 749 aa20.72■□□□□ 0.91
VPS9D1-203ENST00000563798 OGDHLQ9ULD0 1010 aa20.72■□□□□ 0.91
VPS9D1-203ENST00000563798 TMX2Q9Y320 296 aa20.72■□□□□ 0.91
VPS9D1-203ENST00000563798 SLC15A5A6NIM6 579 aa20.71■□□□□ 0.91
VPS9D1-203ENST00000563798 HOXC6P09630 235 aa20.71■□□□□ 0.91
VPS9D1-203ENST00000563798 PRKAR2AP13861 404 aaKnown RBP20.71■□□□□ 0.91
VPS9D1-203ENST00000563798 AKR1B1P15121 316 aa20.71■□□□□ 0.91
VPS9D1-203ENST00000563798 ZKSCAN1P17029 563 aaPredicted RBP20.71■□□□□ 0.91
VPS9D1-203ENST00000563798 PTPREP23469 700 aa20.71■□□□□ 0.91
VPS9D1-203ENST00000563798 MNX1P50219 401 aaPredicted RBP20.71■□□□□ 0.91
VPS9D1-203ENST00000563798 CTR9Q6PD62 1173 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms