RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 C19orf81C9J6K1 198 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 DNM1LO00429 736 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 PTPREP23469 700 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 GUCY1A2P33402 732 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 PDE3AQ14432 1141 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 LBX2Q6XYB7 198 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 ACER1Q8TDN7 264 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 TGFBRAP1Q8WUH2 860 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 LPAR1Q92633 364 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 TRIM43Q96BQ3 446 aaPredicted RBP12.81□□□□□ -0.36
SF3B3-204ENST00000563739 SMC4Q9NTJ3 1288 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 RABGAP1Q9Y3P9 1069 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 CACNA1AO00555 2505 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 BDP1A6H8Y1 2624 aa12.8□□□□□ -0.36
SF3B3-204ENST00000563739 PNMA6EA0A0J9YXQ4 647 aa12.8□□□□□ -0.36
SF3B3-204ENST00000563739 SLC15A5A6NIM6 579 aa12.8□□□□□ -0.36
SF3B3-204ENST00000563739 E9PSI1 815 aa12.8□□□□□ -0.36
SF3B3-204ENST00000563739 GH2P01242 217 aa12.8□□□□□ -0.36
SF3B3-204ENST00000563739 CYP2E1P05181 493 aaPredicted RBP12.8□□□□□ -0.36
SF3B3-204ENST00000563739 PLA2G5P39877 138 aa12.8□□□□□ -0.36
SF3B3-204ENST00000563739 DYNLL1P63167 89 aaKnown RBP12.8□□□□□ -0.36
SF3B3-204ENST00000563739 TRIM60Q495X7 471 aa12.8□□□□□ -0.36
SF3B3-204ENST00000563739 GJC2Q5T442 439 aaPredicted RBP12.8□□□□□ -0.36
SF3B3-204ENST00000563739 TATDN1Q6P1N9 297 aa12.8□□□□□ -0.36
SF3B3-204ENST00000563739 EDC3Q96F86 508 aaKnown RBP12.8□□□□□ -0.36
SF3B3-204ENST00000563739 DHX36Q9H2U1 1008 aaKnown RBP12.8□□□□□ -0.36
SF3B3-204ENST00000563739 PIH1D3Q9NQM4 214 aaKnown RBP12.8□□□□□ -0.36
SF3B3-204ENST00000563739 SNRKQ9NRH2 765 aa12.8□□□□□ -0.36
SF3B3-204ENST00000563739 TMOD4Q9NZQ9 345 aa12.8□□□□□ -0.36
SF3B3-204ENST00000563739 RAI14Q9P0K7 980 aa12.8□□□□□ -0.36
SF3B3-204ENST00000563739 NOB1Q9ULX3 412 aaKnown RBP12.8□□□□□ -0.36
SF3B3-204ENST00000563739 GBF1Q92538 1859 aa12.8□□□□□ -0.36
SF3B3-204ENST00000563739 SRGAP3O43295 1099 aa12.79□□□□□ -0.36
SF3B3-204ENST00000563739 LDHCP07864 332 aa12.79□□□□□ -0.36
SF3B3-204ENST00000563739 VCAM1P19320 739 aa12.79□□□□□ -0.36
SF3B3-204ENST00000563739 GSTO1P78417 241 aa12.79□□□□□ -0.36
SF3B3-204ENST00000563739 ZYXQ15942 572 aaKnown RBP12.79□□□□□ -0.36
SF3B3-204ENST00000563739 ANO1Q5XXA6 986 aa12.79□□□□□ -0.36
SF3B3-204ENST00000563739 USP17L2Q6R6M4 530 aa12.79□□□□□ -0.36
SF3B3-204ENST00000563739 SLC39A5Q6ZMH5 540 aa12.79□□□□□ -0.36
SF3B3-204ENST00000563739 CATSPERGQ6ZRH7 1159 aa12.79□□□□□ -0.36
SF3B3-204ENST00000563739 BADQ92934 168 aa12.79□□□□□ -0.36
SF3B3-204ENST00000563739 GINM1Q9NU53 330 aa12.79□□□□□ -0.36
SF3B3-204ENST00000563739 SAP30BPQ9UHR5 308 aaKnown RBP12.79□□□□□ -0.36
SF3B3-204ENST00000563739 XIRP2A4UGR9 3374 aa12.78□□□□□ -0.36
SF3B3-204ENST00000563739 SMAD3P84022 425 aaKnown RBP12.78□□□□□ -0.36
SF3B3-204ENST00000563739 KIAA1755Q5JYT7 1200 aa12.78□□□□□ -0.36
SF3B3-204ENST00000563739 GTF3C2Q8WUA4 911 aaPredicted RBP12.78□□□□□ -0.36
SF3B3-204ENST00000563739 DBNDD2Q9BQY9 259 aa12.78□□□□□ -0.36
SF3B3-204ENST00000563739 ATP11BQ9Y2G3 1177 aa12.78□□□□□ -0.36
SF3B3-204ENST00000563739 NCOR1O75376 2440 aa12.78□□□□□ -0.36
SF3B3-204ENST00000563739 A0A1W2PRG0 241 aa12.77□□□□□ -0.37
SF3B3-204ENST00000563739 COBLO75128 1261 aa12.77□□□□□ -0.37
SF3B3-204ENST00000563739 SHMT1P34896 483 aa12.77□□□□□ -0.37
SF3B3-204ENST00000563739 FOXP4Q8IVH2 680 aaPredicted RBP12.77□□□□□ -0.37
SF3B3-204ENST00000563739 NEUROD6Q96NK8 337 aa12.77□□□□□ -0.37
SF3B3-204ENST00000563739 KIAA1683Q9H0B3 1180 aa12.77□□□□□ -0.37
SF3B3-204ENST00000563739 TLR7Q9NYK1 1049 aaKnown RBP12.77□□□□□ -0.37
SF3B3-204ENST00000563739 AKAP2Q9Y2D5 859 aa12.77□□□□□ -0.37
SF3B3-204ENST00000563739 MYH8P13535 1937 aa12.77□□□□□ -0.37
SF3B3-204ENST00000563739 USP17L15C9J2P7 530 aa12.76□□□□□ -0.37
SF3B3-204ENST00000563739 USP17L13C9JLJ4 530 aa12.76□□□□□ -0.37
SF3B3-204ENST00000563739 USP17L11C9JVI0 530 aa12.76□□□□□ -0.37
SF3B3-204ENST00000563739 USP17L18D6R9N7 530 aa12.76□□□□□ -0.37
SF3B3-204ENST00000563739 USP17L22D6RA61 530 aa12.76□□□□□ -0.37
SF3B3-204ENST00000563739 USP17L17D6RBQ6 530 aa12.76□□□□□ -0.37
SF3B3-204ENST00000563739 USP17L19D6RCP7 530 aa12.76□□□□□ -0.37
SF3B3-204ENST00000563739 USP17L20D6RJB6 530 aa12.76□□□□□ -0.37
SF3B3-204ENST00000563739 USP17L24Q0WX57 530 aa12.76□□□□□ -0.37
SF3B3-204ENST00000563739 LRRC41Q15345 812 aa12.76□□□□□ -0.37
SF3B3-204ENST00000563739 FAM47AQ5JRC9 791 aa12.76□□□□□ -0.37
SF3B3-204ENST00000563739 C1orf53Q5VUE5 145 aa12.76□□□□□ -0.37
SF3B3-204ENST00000563739 MFSD14CQ5VZR4 134 aa12.76□□□□□ -0.37
SF3B3-204ENST00000563739 NAA16Q6N069 864 aaPredicted RBP12.76□□□□□ -0.37
SF3B3-204ENST00000563739 LBHD1Q9BQE6 289 aaPredicted RBP12.76□□□□□ -0.37
SF3B3-204ENST00000563739 MOV10L1Q9BXT6 1211 aaKnown RBP12.76□□□□□ -0.37
SF3B3-204ENST00000563739 GREB1LQ9C091 1923 aaPredicted RBP12.76□□□□□ -0.37
SF3B3-204ENST00000563739 MSCO60682 206 aa12.75□□□□□ -0.37
SF3B3-204ENST00000563739 FOSL2P15408 326 aa12.75□□□□□ -0.37
SF3B3-204ENST00000563739 ADORA2AP29274 412 aa12.75□□□□□ -0.37
SF3B3-204ENST00000563739 ZAP70P43403 619 aa12.75□□□□□ -0.37
SF3B3-204ENST00000563739 GRIN2CQ14957 1233 aa12.75□□□□□ -0.37
SF3B3-204ENST00000563739 PRAMEF19Q5SWL8 479 aa12.75□□□□□ -0.37
SF3B3-204ENST00000563739 OLFML2BQ68BL8 750 aa12.75□□□□□ -0.37
SF3B3-204ENST00000563739 ROBO3Q96MS0 1386 aa12.75□□□□□ -0.37
SF3B3-204ENST00000563739 EHD4Q9H223 541 aa12.75□□□□□ -0.37
SF3B3-204ENST00000563739 LRP2BPQ9P2M1 347 aa12.75□□□□□ -0.37
SF3B3-204ENST00000563739 TRANK1O15050 2925 aa12.74□□□□□ -0.37
SF3B3-204ENST00000563739 UQCRFS1P1P0C7P4 283 aa12.74□□□□□ -0.37
SF3B3-204ENST00000563739 CNGA1P29973 690 aa12.74□□□□□ -0.37
SF3B3-204ENST00000563739 ADCYAP1R1P41586 468 aa12.74□□□□□ -0.37
SF3B3-204ENST00000563739 GABPAQ06546 454 aa12.74□□□□□ -0.37
SF3B3-204ENST00000563739 POLA2Q14181 598 aa12.74□□□□□ -0.37
SF3B3-204ENST00000563739 TNNI3KQ59H18 835 aa12.74□□□□□ -0.37
SF3B3-204ENST00000563739 CRACR2BQ8N4Y2 399 aaPredicted RBP12.74□□□□□ -0.37
SF3B3-204ENST00000563739 API5Q9BZZ5 524 aaKnown RBP12.74□□□□□ -0.37
SF3B3-204ENST00000563739 RPAP3Q9H6T3 665 aaPredicted RBP12.74□□□□□ -0.37
SF3B3-204ENST00000563739 PRDM5Q9NQX1 630 aaPredicted RBP12.74□□□□□ -0.37
SF3B3-204ENST00000563739 DBNLQ9UJU6 430 aaKnown RBP12.74□□□□□ -0.37
SF3B3-204ENST00000563739 FPGT-TNNI3KV9GXZ4 949 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms