RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 FEZ1Q99689 392 aa16.93■□□□□ 0.3
SMPD3-204ENST00000563396 CABP5Q9NP86 173 aa16.93■□□□□ 0.3
SMPD3-204ENST00000563396 ARPP21Q9UBL0 812 aaPredicted RBP16.93■□□□□ 0.3
SMPD3-204ENST00000563396 TNPO2O14787 897 aaKnown RBP16.92■□□□□ 0.3
SMPD3-204ENST00000563396 ECM2O94769 699 aaPredicted RBP16.92■□□□□ 0.3
SMPD3-204ENST00000563396 VCAM1P19320 739 aa16.92■□□□□ 0.3
SMPD3-204ENST00000563396 GRK4P32298 578 aa16.92■□□□□ 0.3
SMPD3-204ENST00000563396 USP14P54578 494 aa16.92■□□□□ 0.3
SMPD3-204ENST00000563396 RAB3GAP1Q15042 981 aa16.92■□□□□ 0.3
SMPD3-204ENST00000563396 GIMAP6Q6P9H5 292 aa16.92■□□□□ 0.3
SMPD3-204ENST00000563396 TMEM179Q6ZVK1 233 aa16.92■□□□□ 0.3
SMPD3-204ENST00000563396 C16orf86Q6ZW13 317 aa16.92■□□□□ 0.3
SMPD3-204ENST00000563396 RAET1EQ8TD07 263 aa16.92■□□□□ 0.3
SMPD3-204ENST00000563396 OSBP2Q969R2 916 aa16.92■□□□□ 0.3
SMPD3-204ENST00000563396 STRBPQ96SI9 672 aaKnown RBP16.92■□□□□ 0.3
SMPD3-204ENST00000563396 GABRQQ9UN88 632 aa16.92■□□□□ 0.3
SMPD3-204ENST00000563396 SLC4A4Q9Y6R1 1079 aa16.92■□□□□ 0.3
SMPD3-204ENST00000563396 RNF113AO15541 343 aaKnown RBP16.91■□□□□ 0.3
SMPD3-204ENST00000563396 SEPT2Q15019 361 aa16.91■□□□□ 0.3
SMPD3-204ENST00000563396 AMOTL1Q8IY63 956 aa16.91■□□□□ 0.3
SMPD3-204ENST00000563396 ACER1Q8TDN7 264 aa16.91■□□□□ 0.3
SMPD3-204ENST00000563396 PXYLP1Q8TE99 480 aa16.91■□□□□ 0.3
SMPD3-204ENST00000563396 DYNLL2Q96FJ2 89 aa16.91■□□□□ 0.3
SMPD3-204ENST00000563396 DDRGK1Q96HY6 314 aa16.91■□□□□ 0.3
SMPD3-204ENST00000563396 USP17L12C9JPN9 530 aa16.9■□□□□ 0.3
SMPD3-204ENST00000563396 USP17L21D6R901 530 aa16.9■□□□□ 0.3
SMPD3-204ENST00000563396 FLT3LGP49771 235 aa16.9■□□□□ 0.3
SMPD3-204ENST00000563396 LRRFIP1Q32MZ4 808 aaKnown RBP16.9■□□□□ 0.3
SMPD3-204ENST00000563396 SBK1Q52WX2 424 aa16.9■□□□□ 0.3
SMPD3-204ENST00000563396 CTR9Q6PD62 1173 aa16.9■□□□□ 0.3
SMPD3-204ENST00000563396 LBX2Q6XYB7 198 aa16.9■□□□□ 0.3
SMPD3-204ENST00000563396 COA7Q96BR5 231 aa16.9■□□□□ 0.3
SMPD3-204ENST00000563396 CCDC17Q96LX7 622 aa16.9■□□□□ 0.3
SMPD3-204ENST00000563396 P2RX7Q99572 595 aaKnown RBP16.9■□□□□ 0.3
SMPD3-204ENST00000563396 TMEM106CQ9BVX2 250 aa16.9■□□□□ 0.3
SMPD3-204ENST00000563396 TXNRD2Q9NNW7 524 aa16.9■□□□□ 0.3
SMPD3-204ENST00000563396 CYP2D7A0A087X1C5 515 aa16.89■□□□□ 0.29
SMPD3-204ENST00000563396 A0A1W2PRG0 241 aa16.89■□□□□ 0.29
SMPD3-204ENST00000563396 GSG1L2A8MUP6 293 aa16.89■□□□□ 0.29
SMPD3-204ENST00000563396 SMIM22K7EJ46 135 aa16.89■□□□□ 0.29
SMPD3-204ENST00000563396 GPAA1O43292 621 aa16.89■□□□□ 0.29
SMPD3-204ENST00000563396 POTEEQ6S8J3 1075 aa16.89■□□□□ 0.29
SMPD3-204ENST00000563396 SMC5Q8IY18 1101 aa16.89■□□□□ 0.29
SMPD3-204ENST00000563396 EPB41L4AQ9HCS5 686 aaPredicted RBP16.89■□□□□ 0.29
SMPD3-204ENST00000563396 STAP2Q9UGK3 403 aa16.89■□□□□ 0.29
SMPD3-204ENST00000563396 MYH4Q9Y623 1939 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 USP17L15C9J2P7 530 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 USP17L13C9JLJ4 530 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 USP17L11C9JVI0 530 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 USP17L18D6R9N7 530 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 USP17L22D6RA61 530 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 USP17L17D6RBQ6 530 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 USP17L19D6RCP7 530 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 USP17L20D6RJB6 530 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 M0R2C6 588 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 AKR1B1P15121 316 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 GNAT2P19087 354 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 EN2P19622 333 aaPredicted RBP16.88■□□□□ 0.29
SMPD3-204ENST00000563396 CDK8P49336 464 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 ERVK-9P63128 1117 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 ERVK-24P63145 666 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 USP17L24Q0WX57 530 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 MTFR1Q15390 333 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 ZYXQ15942 572 aaKnown RBP16.88■□□□□ 0.29
SMPD3-204ENST00000563396 CATSPERGQ6ZRH7 1159 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 SHISA4Q96DD7 197 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 RBPJLQ9UBG7 517 aa16.88■□□□□ 0.29
SMPD3-204ENST00000563396 COL11A1P12107 1806 aaPredicted RBP16.88■□□□□ 0.29
SMPD3-204ENST00000563396 FRMPD3Q5JV73 1810 aa16.87■□□□□ 0.29
SMPD3-204ENST00000563396 MPHOSPH10O00566 681 aaKnown RBP16.87■□□□□ 0.29
SMPD3-204ENST00000563396 ADCY3O60266 1144 aa16.87■□□□□ 0.29
SMPD3-204ENST00000563396 UBXN2AP68543 259 aa16.87■□□□□ 0.29
SMPD3-204ENST00000563396 ICA1Q05084 483 aa16.87■□□□□ 0.29
SMPD3-204ENST00000563396 ZMYM1Q5SVZ6 1142 aa16.87■□□□□ 0.29
SMPD3-204ENST00000563396 ANKRD45Q5TZF3 282 aa16.87■□□□□ 0.29
SMPD3-204ENST00000563396 GPRC5AQ8NFJ5 357 aa16.87■□□□□ 0.29
SMPD3-204ENST00000563396 FSD1Q9BTV5 496 aa16.87■□□□□ 0.29
SMPD3-204ENST00000563396 GJD2Q9UKL4 321 aa16.87■□□□□ 0.29
SMPD3-204ENST00000563396 SPDYE16A6NNV3 312 aaPredicted RBP16.86■□□□□ 0.29
SMPD3-204ENST00000563396 CNMDO75829 334 aa16.86■□□□□ 0.29
SMPD3-204ENST00000563396 PDE1AP54750 535 aa16.86■□□□□ 0.29
SMPD3-204ENST00000563396 PRPF38BQ5VTL8 546 aaKnown RBP16.86■□□□□ 0.29
SMPD3-204ENST00000563396 SIAH1Q8IUQ4 282 aa16.86■□□□□ 0.29
SMPD3-204ENST00000563396 SOCS4Q8WXH5 440 aa16.86■□□□□ 0.29
SMPD3-204ENST00000563396 LPAR1Q92633 364 aa16.86■□□□□ 0.29
SMPD3-204ENST00000563396 RPAP3Q9H6T3 665 aaPredicted RBP16.86■□□□□ 0.29
SMPD3-204ENST00000563396 SH2D4AQ9H788 454 aa16.86■□□□□ 0.29
SMPD3-204ENST00000563396 ARHGEF10LQ9HCE6 1279 aa16.86■□□□□ 0.29
SMPD3-204ENST00000563396 TMX2Q9Y320 296 aa16.86■□□□□ 0.29
SMPD3-204ENST00000563396 RABGAP1Q9Y3P9 1069 aa16.86■□□□□ 0.29
SMPD3-204ENST00000563396 PLIN4Q96Q06 1357 aa16.86■□□□□ 0.29
SMPD3-204ENST00000563396 LAMA4Q16363 1823 aa16.85■□□□□ 0.29
SMPD3-204ENST00000563396 INHAP05111 366 aa16.85■□□□□ 0.29
SMPD3-204ENST00000563396 GJB1P08034 283 aa16.85■□□□□ 0.29
SMPD3-204ENST00000563396 CCL5P13501 91 aa16.85■□□□□ 0.29
SMPD3-204ENST00000563396 ELNP15502 786 aa16.85■□□□□ 0.29
SMPD3-204ENST00000563396 MAPK4P31152 587 aa16.85■□□□□ 0.29
SMPD3-204ENST00000563396 TICAM2Q86XR7 235 aa16.85■□□□□ 0.29
SMPD3-204ENST00000563396 CLEC10AQ8IUN9 316 aa16.85■□□□□ 0.29
SMPD3-204ENST00000563396 VCPKMTQ9H867 229 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms