RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 SLC4A4Q9Y6R1 1079 aa15.86■□□□□ 0.13
VPS9D1-202ENST00000561976 A0A087X0B3 334 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 FAM205CA6NFA0 338 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 GSG1L2A8MUP6 293 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 BEND6Q5SZJ8 279 aaPredicted RBP15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 GIGYF2Q6Y7W6 1299 aaKnown RBP15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 NLRP10Q86W26 655 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 ZNF654Q8IZM8 581 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 ACRBPQ8NEB7 543 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 PAGE5Q96GU1 130 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 CDC5LQ99459 802 aaKnown RBP15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 TRMT112Q9UI30 125 aaKnown RBP15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 MYO5AQ9Y4I1 1855 aaKnown RBP15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 VGLL3A8MV65 326 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 COBLO75128 1261 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 EIF3JO75822 258 aaKnown RBP15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 XBP1P17861 261 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 TMTC2Q8N394 836 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 HNRNPLLQ8WVV9 542 aaKnown RBP15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 UBAC1Q9BSL1 405 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 PRDM11Q9NQV5 511 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 AATFQ9NY61 560 aaKnown RBP eCLIP15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 TMOD3Q9NYL9 352 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 CDHR2Q9BYE9 1310 aa15.85■□□□□ 0.13
VPS9D1-202ENST00000561976 FXR1P51114 621 aaKnown RBP eCLIP15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 CUL4BQ13620 913 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 PUM3Q15397 648 aaKnown RBP15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 CT47A1Q5JQC4 288 aaPredicted RBP15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 AEBP2Q6ZN18 517 aaPredicted RBP15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 LPIN2Q92539 896 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 STAMQ92783 540 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 SYMPKQ92797 1274 aaKnown RBP15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 ABCB6Q9NP58 842 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 VPS54Q9P1Q0 977 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 TTF2Q9UNY4 1162 aaKnown RBP15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 PARP4Q9UKK3 1724 aaKnown RBP15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 TFRCP02786 760 aaKnown RBP15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 GYPCP04921 128 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 PBX1P40424 430 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 TUBB2AQ13885 445 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 CDKAL1Q5VV42 579 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 GOLGA5Q8TBA6 731 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 STAG1Q8WVM7 1258 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 TUBB2BQ9BVA1 445 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 FEZ2Q9UHY8 353 aaPredicted RBP15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 CTNND2Q9UQB3 1225 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 ADAMTSL3P82987 1691 aa15.84■□□□□ 0.13
VPS9D1-202ENST00000561976 CTAGE15A4D2H0 777 aa15.83■□□□□ 0.13
VPS9D1-202ENST00000561976 N4BP3O15049 544 aa15.83■□□□□ 0.13
VPS9D1-202ENST00000561976 CTAGE8P0CG41 777 aa15.83■□□□□ 0.13
VPS9D1-202ENST00000561976 CTAGE6Q86UF2 777 aa15.83■□□□□ 0.13
VPS9D1-202ENST00000561976 CTAGE4Q8IX94 777 aa15.83■□□□□ 0.13
VPS9D1-202ENST00000561976 NAPGQ99747 312 aaPredicted RBP15.83■□□□□ 0.13
VPS9D1-202ENST00000561976 SUGCTQ9HAC7 445 aa15.83■□□□□ 0.13
VPS9D1-202ENST00000561976 PSD3Q9NYI0 1048 aa15.83■□□□□ 0.13
VPS9D1-202ENST00000561976 WDR17Q8IZU2 1322 aa15.83■□□□□ 0.13
VPS9D1-202ENST00000561976 UBR2Q8IWV8 1755 aa15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 hCG_1642624A0A1W2PR95 340 aa15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 STARD3NLO95772 234 aa15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 IL2RBP14784 551 aa15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 MAPK8IP2Q13387 824 aaPredicted RBP15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 RASGRF1Q13972 1273 aa15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 NKX1-1Q15270 411 aaPredicted RBP15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 WWC2Q6AWC2 1192 aa15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 LEKR1Q6ZMV7 388 aa15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 LCORLQ8N3X6 602 aa15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 MSANTD4Q8NCY6 345 aa15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 CCDC51Q96ER9 411 aa15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 GSDMAQ96QA5 445 aa15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 NUP88Q99567 741 aaPredicted RBP15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 RAB21Q9UL25 225 aa15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 TNS3Q68CZ2 1445 aa15.83■□□□□ 0.12
VPS9D1-202ENST00000561976 PPP1R3GB7ZBB8 358 aa15.82■□□□□ 0.12
VPS9D1-202ENST00000561976 SNAP23O00161 211 aa15.82■□□□□ 0.12
VPS9D1-202ENST00000561976 KRT2P35908 639 aa15.82■□□□□ 0.12
VPS9D1-202ENST00000561976 TUBB4BP68371 445 aa15.82■□□□□ 0.12
VPS9D1-202ENST00000561976 TMTC1Q8IUR5 882 aa15.82■□□□□ 0.12
VPS9D1-202ENST00000561976 MIGA1Q8NAN2 632 aa15.82■□□□□ 0.12
VPS9D1-202ENST00000561976 VPS16Q9H269 839 aa15.82■□□□□ 0.12
VPS9D1-202ENST00000561976 ABL1P00519 1130 aa15.82■□□□□ 0.12
VPS9D1-202ENST00000561976 SLC5A1P13866 664 aa15.82■□□□□ 0.12
VPS9D1-202ENST00000561976 USP5P45974 858 aa15.82■□□□□ 0.12
VPS9D1-202ENST00000561976 CCDC102AQ96A19 550 aa15.82■□□□□ 0.12
VPS9D1-202ENST00000561976 NID2Q14112 1375 aa15.82■□□□□ 0.12
VPS9D1-202ENST00000561976 MINDY4BA8MYZ0 360 aa15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 SEMA3EO15041 775 aa15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 PRDM1O75626 825 aa15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 ACTN2P35609 894 aa15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 PIP4K2BP78356 416 aa15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 DPYDQ12882 1025 aa15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 ZNF174Q15697 407 aa15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 TRIM34Q9BYJ4 488 aa15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 RNF41Q9H4P4 317 aaPredicted RBP15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 ASAP1Q9ULH1 1129 aa15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 L1RE1Q9UN81 338 aa15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 ZNF142P52746 1687 aaPredicted RBP15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 PDE8AO60658 829 aa15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 N4BP1O75113 896 aaKnown RBP15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 GNAT2P19087 354 aa15.81■□□□□ 0.12
VPS9D1-202ENST00000561976 VSNL1P62760 191 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms