RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 CDC37L1Q7L3B6 337 aa7.47□□□□□ -1.21
VPS13C-210ENST00000561258 NOP9Q86U38 636 aaKnown RBP7.47□□□□□ -1.21
VPS13C-210ENST00000561258 COPRSQ9NQ92 184 aa7.47□□□□□ -1.21
VPS13C-210ENST00000561258 PRDM5Q9NQX1 630 aaPredicted RBP7.47□□□□□ -1.21
VPS13C-210ENST00000561258 FANCGO15287 622 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 TRIM37O94972 964 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 GLI1P08151 1106 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 PAK2Q13177 524 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 KRTAP19-4Q3LI73 84 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 SYDE1Q6ZW31 735 aaPredicted RBP7.46□□□□□ -1.22
VPS13C-210ENST00000561258 ARMCX6Q7L4S7 300 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 CYFIP1Q7L576 1253 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 C1QL4Q86Z23 238 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 HSPA12BQ96MM6 686 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 NOC4LQ9BVI4 516 aaKnown RBP7.46□□□□□ -1.22
VPS13C-210ENST00000561258 FOXQ1Q9C009 403 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 ATP13A1Q9HD20 1204 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 SEMA3GQ9NS98 782 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 C19orf73Q9NVV2 129 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 LMCD1Q9NZU5 365 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 PCDHA4Q9UN74 947 aa7.46□□□□□ -1.22
VPS13C-210ENST00000561258 SLITRK5O94991 958 aa7.45□□□□□ -1.22
VPS13C-210ENST00000561258 TSPAN15O95858 294 aa7.45□□□□□ -1.22
VPS13C-210ENST00000561258 ZNF865P0CJ78 1059 aaPredicted RBP7.45□□□□□ -1.22
VPS13C-210ENST00000561258 ATF4P18848 351 aaPredicted RBP7.45□□□□□ -1.22
VPS13C-210ENST00000561258 GSTT1P30711 240 aa7.45□□□□□ -1.22
VPS13C-210ENST00000561258 CCDC144BQ3MJ40 725 aa7.45□□□□□ -1.22
VPS13C-210ENST00000561258 MPZL3Q6UWV2 235 aa7.45□□□□□ -1.22
VPS13C-210ENST00000561258 VPS37DQ86XT2 251 aa7.45□□□□□ -1.22
VPS13C-210ENST00000561258 GPRASP2Q96D09 838 aa7.45□□□□□ -1.22
VPS13C-210ENST00000561258 KIRREL1Q96J84 757 aa7.45□□□□□ -1.22
VPS13C-210ENST00000561258 TOX2Q96NM4 488 aa7.45□□□□□ -1.22
VPS13C-210ENST00000561258 INPP5AQ14642 412 aa7.44□□□□□ -1.22
VPS13C-210ENST00000561258 CDKAL1Q5VV42 579 aa7.44□□□□□ -1.22
VPS13C-210ENST00000561258 LLGL2Q6P1M3 1020 aa7.44□□□□□ -1.22
VPS13C-210ENST00000561258 LCNL1Q6ZST4 164 aa7.44□□□□□ -1.22
VPS13C-210ENST00000561258 RASGRP4Q8TDF6 673 aa7.44□□□□□ -1.22
VPS13C-210ENST00000561258 HIRIP3Q9BW71 556 aaPredicted RBP7.44□□□□□ -1.22
VPS13C-210ENST00000561258 FBRSQ9HAH7 460 aa7.44□□□□□ -1.22
VPS13C-210ENST00000561258 KBTBD4Q9NVX7 518 aa7.44□□□□□ -1.22
VPS13C-210ENST00000561258 MAPK8IP1Q9UQF2 711 aa7.44□□□□□ -1.22
VPS13C-210ENST00000561258 SAMM50Q9Y512 469 aa7.44□□□□□ -1.22
VPS13C-210ENST00000561258 FAM155AB1AL88 458 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-210ENST00000561258 LRIG2O94898 1065 aa7.43□□□□□ -1.22
VPS13C-210ENST00000561258 TMEM67Q5HYA8 995 aa7.43□□□□□ -1.22
VPS13C-210ENST00000561258 LRRC56Q8IYG6 542 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-210ENST00000561258 KCT2Q8NC54 265 aa7.43□□□□□ -1.22
VPS13C-210ENST00000561258 ANKRD24Q8TF21 1146 aa7.43□□□□□ -1.22
VPS13C-210ENST00000561258 ELMO3Q96BJ8 720 aa7.43□□□□□ -1.22
VPS13C-210ENST00000561258 PPP1R16BQ96T49 567 aa7.43□□□□□ -1.22
VPS13C-210ENST00000561258 RSRP1Q9BUV0 290 aa7.43□□□□□ -1.22
VPS13C-210ENST00000561258 CEP44Q9C0F1 390 aa7.43□□□□□ -1.22
VPS13C-210ENST00000561258 TTF2Q9UNY4 1162 aaKnown RBP7.43□□□□□ -1.22
VPS13C-210ENST00000561258 PRAMEF27A3QJZ7 478 aa7.42□□□□□ -1.22
VPS13C-210ENST00000561258 H3BS24 57 aa7.42□□□□□ -1.22
VPS13C-210ENST00000561258 KRT1P04264 644 aa7.42□□□□□ -1.22
VPS13C-210ENST00000561258 C1QTNF9P0C862 333 aa7.42□□□□□ -1.22
VPS13C-210ENST00000561258 PTPN11Q06124 597 aaPredicted RBP7.42□□□□□ -1.22
VPS13C-210ENST00000561258 SOGA3Q5TF21 947 aa7.42□□□□□ -1.22
VPS13C-210ENST00000561258 LRFN4Q6PJG9 635 aa7.42□□□□□ -1.22
VPS13C-210ENST00000561258 PMFBP1Q8TBY8 1022 aa7.42□□□□□ -1.22
VPS13C-210ENST00000561258 ZNF507Q8TCN5 953 aa7.42□□□□□ -1.22
VPS13C-210ENST00000561258 MIPEPQ99797 713 aa7.42□□□□□ -1.22
VPS13C-210ENST00000561258 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.42□□□□□ -1.22
VPS13C-210ENST00000561258 PIF1Q9H611 641 aa7.42□□□□□ -1.22
VPS13C-210ENST00000561258 KCNK12Q9HB15 430 aa7.42□□□□□ -1.22
VPS13C-210ENST00000561258 TPX2Q9ULW0 747 aaKnown RBP7.42□□□□□ -1.22
VPS13C-210ENST00000561258 STK10O94804 968 aaKnown RBP7.41□□□□□ -1.22
VPS13C-210ENST00000561258 GDNFP39905 211 aa7.41□□□□□ -1.22
VPS13C-210ENST00000561258 SLBPQ14493 270 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS13C-210ENST00000561258 LRRC14Q15048 493 aa7.41□□□□□ -1.22
VPS13C-210ENST00000561258 SFRP5Q5T4F7 317 aa7.41□□□□□ -1.22
VPS13C-210ENST00000561258 ANKLE2Q86XL3 938 aa7.41□□□□□ -1.22
VPS13C-210ENST00000561258 MFSD4AQ8N468 514 aa7.41□□□□□ -1.22
VPS13C-210ENST00000561258 RIN3Q8TB24 985 aa7.41□□□□□ -1.22
VPS13C-210ENST00000561258 ZSCAN18Q8TBC5 510 aaPredicted RBP7.41□□□□□ -1.22
VPS13C-210ENST00000561258 DIRC2Q96SL1 478 aa7.41□□□□□ -1.22
VPS13C-210ENST00000561258 ADAMTS1Q9UHI8 967 aa7.41□□□□□ -1.22
VPS13C-210ENST00000561258 PPM1HQ9ULR3 514 aa7.41□□□□□ -1.22
VPS13C-210ENST00000561258 CELA3AP09093 270 aa7.4□□□□□ -1.22
VPS13C-210ENST00000561258 CDK11BP21127 795 aaKnown RBP7.4□□□□□ -1.22
VPS13C-210ENST00000561258 NKG7Q16617 165 aa7.4□□□□□ -1.22
VPS13C-210ENST00000561258 KIAA0825Q8IV33 1275 aa7.4□□□□□ -1.22
VPS13C-210ENST00000561258 SPON2Q9BUD6 331 aa7.4□□□□□ -1.22
VPS13C-210ENST00000561258 KRTAP4-11Q9BYQ6 195 aa7.4□□□□□ -1.22
VPS13C-210ENST00000561258 CDK11AQ9UQ88 783 aaPredicted RBP7.4□□□□□ -1.22
VPS13C-210ENST00000561258 TMA7Q9Y2S6 64 aaKnown RBP7.4□□□□□ -1.22
VPS13C-210ENST00000561258 ST14Q9Y5Y6 855 aa7.4□□□□□ -1.22
VPS13C-210ENST00000561258 ZSCAN22P10073 491 aaPredicted RBP7.39□□□□□ -1.23
VPS13C-210ENST00000561258 PWP1Q13610 501 aa7.39□□□□□ -1.23
VPS13C-210ENST00000561258 CCDC85BQ15834 202 aaPredicted RBP7.39□□□□□ -1.23
VPS13C-210ENST00000561258 PCNX4Q63HM2 1172 aa7.39□□□□□ -1.23
VPS13C-210ENST00000561258 PLPPR2Q96GM1 343 aa7.39□□□□□ -1.23
VPS13C-210ENST00000561258 SEC16BQ96JE7 1060 aa7.39□□□□□ -1.23
VPS13C-210ENST00000561258 OSBPL2Q9H1P3 480 aa7.39□□□□□ -1.23
VPS13C-210ENST00000561258 NSUN3Q9H649 340 aaKnown RBP7.39□□□□□ -1.23
VPS13C-210ENST00000561258 ZSWIM4Q9H7M6 989 aa7.39□□□□□ -1.23
VPS13C-210ENST00000561258 TBX22Q9Y458 520 aa7.39□□□□□ -1.23
VPS13C-210ENST00000561258 CAPN6Q9Y6Q1 641 aa7.39□□□□□ -1.23
VPS13C-210ENST00000561258 TLDC2A0PJX2 215 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms