RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 USP17L11C9JVI0 530 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 USP17L18D6R9N7 530 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 USP17L22D6RA61 530 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 USP17L17D6RBQ6 530 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 USP17L19D6RCP7 530 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 USP17L20D6RJB6 530 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 GUCY1A2P33402 732 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 ADD2P35612 726 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 ERVK-9P63128 1117 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 ERVK-24P63145 666 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 USP17L24Q0WX57 530 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 ACER1Q8TDN7 264 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 HTATIP2Q9BUP3 242 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 LRRCC1Q9C099 1032 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 CRISPLD2Q9H0B8 497 aa19.61■□□□□ 0.73
SNX1-213ENST00000561026 MAPK4P31152 587 aa19.6■□□□□ 0.73
SNX1-213ENST00000561026 EVX2Q03828 476 aa19.6■□□□□ 0.73
SNX1-213ENST00000561026 SLFNL1Q499Z3 407 aa19.6■□□□□ 0.73
SNX1-213ENST00000561026 NUDT12Q9BQG2 462 aa19.6■□□□□ 0.73
SNX1-213ENST00000561026 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.6■□□□□ 0.732e-6■■□□□ 13.8
SNX1-213ENST00000561026 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.6■□□□□ 0.73
SNX1-213ENST00000561026 ARMT1Q9H993 441 aa19.6■□□□□ 0.73
SNX1-213ENST00000561026 COLQQ9Y215 455 aaPredicted RBP19.6■□□□□ 0.73
SNX1-213ENST00000561026 XRCC5P13010 732 aaKnown RBP19.59■□□□□ 0.73
SNX1-213ENST00000561026 VCAM1P19320 739 aa19.59■□□□□ 0.73
SNX1-213ENST00000561026 CYP2B6P20813 491 aa19.59■□□□□ 0.73
SNX1-213ENST00000561026 SEPT2Q15019 361 aa19.59■□□□□ 0.73
SNX1-213ENST00000561026 CATSPERGQ6ZRH7 1159 aa19.59■□□□□ 0.73
SNX1-213ENST00000561026 SOCS4Q8WXH5 440 aa19.59■□□□□ 0.73
SNX1-213ENST00000561026 TRIB2Q92519 343 aa19.59■□□□□ 0.73
SNX1-213ENST00000561026 PAGR1Q9BTK6 254 aa19.59■□□□□ 0.73
SNX1-213ENST00000561026 PORCNQ9H237 461 aa19.59■□□□□ 0.73
SNX1-213ENST00000561026 PCDH10Q9P2E7 1040 aa19.59■□□□□ 0.73
SNX1-213ENST00000561026 RABGAP1Q9Y3P9 1069 aa19.59■□□□□ 0.73
SNX1-213ENST00000561026 DDX60LQ5H9U9 1706 aaKnown RBP19.59■□□□□ 0.73
SNX1-213ENST00000561026 RPTORQ8N122 1335 aa19.59■□□□□ 0.73
SNX1-213ENST00000561026 TRIM32Q13049 653 aa19.58■□□□□ 0.73
SNX1-213ENST00000561026 CCAR1Q8IX12 1150 aaKnown RBP19.58■□□□□ 0.73
SNX1-213ENST00000561026 ATP8A2Q9NTI2 1148 aa19.58■□□□□ 0.73
SNX1-213ENST00000561026 PRKAB2O43741 272 aa19.57■□□□□ 0.72
SNX1-213ENST00000561026 SMARCA5O60264 1052 aaPredicted RBP19.57■□□□□ 0.72
SNX1-213ENST00000561026 MBD4O95243 580 aa19.57■□□□□ 0.72
SNX1-213ENST00000561026 CYP2D6P10635 497 aa19.57■□□□□ 0.72
SNX1-213ENST00000561026 UBE3CQ15386 1083 aa19.57■□□□□ 0.72
SNX1-213ENST00000561026 GPR142Q7Z601 462 aa19.57■□□□□ 0.72
SNX1-213ENST00000561026 USP6NLQ92738 828 aa19.57■□□□□ 0.72
SNX1-213ENST00000561026 HMX1Q9NP08 348 aaPredicted RBP19.57■□□□□ 0.72
SNX1-213ENST00000561026 RANBP2P49792 3224 aaKnown RBP19.57■□□□□ 0.72
SNX1-213ENST00000561026 MPHOSPH10O00566 681 aaKnown RBP19.57■□□□□ 0.72
SNX1-213ENST00000561026 CNMDO75829 334 aa19.57■□□□□ 0.72
SNX1-213ENST00000561026 CHGBP05060 677 aa19.57■□□□□ 0.72
SNX1-213ENST00000561026 MORN1Q5T089 497 aa19.57■□□□□ 0.72
SNX1-213ENST00000561026 LBX2Q6XYB7 198 aa19.57■□□□□ 0.72
SNX1-213ENST00000561026 PLEKHH3Q7Z736 793 aa19.57■□□□□ 0.72
SNX1-213ENST00000561026 SLC44A5Q8NCS7 719 aa19.57■□□□□ 0.72
SNX1-213ENST00000561026 SWAP70Q9UH65 585 aa19.57■□□□□ 0.72
SNX1-213ENST00000561026 PLXNB2O15031 1838 aa19.56■□□□□ 0.72
SNX1-213ENST00000561026 NAV1Q8NEY1 1877 aa19.56■□□□□ 0.72
SNX1-213ENST00000561026 A0A1W2PRG0 241 aa19.56■□□□□ 0.72
SNX1-213ENST00000561026 CCNA1P78396 465 aa19.56■□□□□ 0.72
SNX1-213ENST00000561026 MAP3K21Q5TCX8 1036 aa19.56■□□□□ 0.72
SNX1-213ENST00000561026 TRMT44Q8IYL2 757 aaKnown RBP19.56■□□□□ 0.72
SNX1-213ENST00000561026 DYNLL2Q96FJ2 89 aa19.56■□□□□ 0.72
SNX1-213ENST00000561026 RPAP3Q9H6T3 665 aaPredicted RBP19.56■□□□□ 0.72
SNX1-213ENST00000561026 NR2E3Q9Y5X4 410 aa19.56■□□□□ 0.72
SNX1-213ENST00000561026 RGS2P41220 211 aa19.55■□□□□ 0.72
SNX1-213ENST00000561026 TMEM179Q6ZVK1 233 aa19.55■□□□□ 0.72
SNX1-213ENST00000561026 PAWRQ96IZ0 340 aaKnown RBP19.55■□□□□ 0.72
SNX1-213ENST00000561026 DCTPP1Q9H773 170 aa19.55■□□□□ 0.72
SNX1-213ENST00000561026 ECHDC1Q9NTX5 307 aa19.55■□□□□ 0.72
SNX1-213ENST00000561026 PRKAR2AP13861 404 aaKnown RBP19.54■□□□□ 0.72
SNX1-213ENST00000561026 ZKSCAN1P17029 563 aaPredicted RBP19.54■□□□□ 0.72
SNX1-213ENST00000561026 FXR1P51114 621 aaKnown RBP eCLIP19.54■□□□□ 0.72
SNX1-213ENST00000561026 C12orf60Q5U649 245 aa19.54■□□□□ 0.72
SNX1-213ENST00000561026 ZSCAN25Q6NSZ9 544 aa19.54■□□□□ 0.72
SNX1-213ENST00000561026 ANKLE1Q8NAG6 615 aa19.54■□□□□ 0.72
SNX1-213ENST00000561026 BTBD7Q9P203 1132 aa19.54■□□□□ 0.72
SNX1-213ENST00000561026 TRIOBPQ9H2D6 2365 aa19.53■□□□□ 0.72
SNX1-213ENST00000561026 SPDYE16A6NNV3 312 aaPredicted RBP19.53■□□□□ 0.72
SNX1-213ENST00000561026 USP17L12C9JPN9 530 aa19.53■□□□□ 0.72
SNX1-213ENST00000561026 USP17L21D6R901 530 aa19.53■□□□□ 0.72
SNX1-213ENST00000561026 GLRX3O76003 335 aaKnown RBP19.53■□□□□ 0.72
SNX1-213ENST00000561026 CHRDL2Q6WN34 429 aa19.53■□□□□ 0.72
SNX1-213ENST00000561026 NECAB2Q7Z6G3 386 aa19.53■□□□□ 0.72
SNX1-213ENST00000561026 SIAH1Q8IUQ4 282 aa19.53■□□□□ 0.72
SNX1-213ENST00000561026 DIS3LQ8TF46 1054 aaKnown RBP19.53■□□□□ 0.72
SNX1-213ENST00000561026 DDRGK1Q96HY6 314 aa19.53■□□□□ 0.72
SNX1-213ENST00000561026 APBA2Q99767 749 aa19.53■□□□□ 0.72
SNX1-213ENST00000561026 PUS7LQ9H0K6 701 aaKnown RBP19.53■□□□□ 0.72
SNX1-213ENST00000561026 CWC22Q9HCG8 908 aaKnown RBP19.53■□□□□ 0.72
SNX1-213ENST00000561026 HOXC10Q9NYD6 342 aa19.53■□□□□ 0.72
SNX1-213ENST00000561026 CYP2D7A0A087X1C5 515 aa19.52■□□□□ 0.72
SNX1-213ENST00000561026 SMIM22K7EJ46 135 aa19.52■□□□□ 0.72
SNX1-213ENST00000561026 EVI5O60447 810 aa19.52■□□□□ 0.72
SNX1-213ENST00000561026 AKR1B1P15121 316 aa19.52■□□□□ 0.72
SNX1-213ENST00000561026 CDK8P49336 464 aa19.52■□□□□ 0.72
SNX1-213ENST00000561026 CACNB2Q08289 660 aaPredicted RBP19.52■□□□□ 0.72
SNX1-213ENST00000561026 MAP2K5Q13163 448 aa19.52■□□□□ 0.72
SNX1-213ENST00000561026 COG2Q14746 738 aa19.52■□□□□ 0.72
SNX1-213ENST00000561026 CCL14Q16627 93 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms