RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 DCP1AQ9NPI6 582 aaPredicted RBP16.95■□□□□ 0.3
TPM1-223ENST00000560445 CENPFP49454 3210 aa16.95■□□□□ 0.3
TPM1-223ENST00000560445 MPHOSPH10O00566 681 aaKnown RBP16.94■□□□□ 0.3
TPM1-223ENST00000560445 HMGCRP04035 888 aa16.94■□□□□ 0.3
TPM1-223ENST00000560445 LCORLQ8N3X6 602 aa16.94■□□□□ 0.3
TPM1-223ENST00000560445 MYH8P13535 1937 aa16.94■□□□□ 0.3
TPM1-223ENST00000560445 INHAP05111 366 aa16.93■□□□□ 0.3
TPM1-223ENST00000560445 SHMT1P34896 483 aa16.93■□□□□ 0.3
TPM1-223ENST00000560445 PLCD1P51178 756 aa16.93■□□□□ 0.3
TPM1-223ENST00000560445 GABPAQ06546 454 aa16.93■□□□□ 0.3
TPM1-223ENST00000560445 NUDT12Q9BQG2 462 aa16.93■□□□□ 0.3
TPM1-223ENST00000560445 ARMT1Q9H993 441 aa16.93■□□□□ 0.3
TPM1-223ENST00000560445 ARHGEF10LQ9HCE6 1279 aa16.93■□□□□ 0.3
TPM1-223ENST00000560445 ARPP21Q9UBL0 812 aaPredicted RBP16.93■□□□□ 0.3
TPM1-223ENST00000560445 GABRQQ9UN88 632 aa16.93■□□□□ 0.3
TPM1-223ENST00000560445 RABGAP1Q9Y3P9 1069 aa16.93■□□□□ 0.3
TPM1-223ENST00000560445 GNAT2P19087 354 aa16.92■□□□□ 0.3
TPM1-223ENST00000560445 ERVK-9P63128 1117 aa16.92■□□□□ 0.3
TPM1-223ENST00000560445 ERVK-24P63145 666 aa16.92■□□□□ 0.3
TPM1-223ENST00000560445 AAMPQ13685 434 aa16.92■□□□□ 0.3
TPM1-223ENST00000560445 SDR42E1Q8WUS8 393 aa16.92■□□□□ 0.3
TPM1-223ENST00000560445 LPAR1Q92633 364 aa16.92■□□□□ 0.3
TPM1-223ENST00000560445 P2RX7Q99572 595 aaKnown RBP16.92■□□□□ 0.3
TPM1-223ENST00000560445 ZNF287Q9HBT7 754 aa16.92■□□□□ 0.3
TPM1-223ENST00000560445 EMILIN3Q9NT22 766 aa16.92■□□□□ 0.3
TPM1-223ENST00000560445 TTC41PQ6P2S7 1318 aa16.92■□□□□ 0.3
TPM1-223ENST00000560445 XRCC5P13010 732 aaKnown RBP16.91■□□□□ 0.3
TPM1-223ENST00000560445 VCAM1P19320 739 aa16.91■□□□□ 0.3
TPM1-223ENST00000560445 JAG1P78504 1218 aa16.91■□□□□ 0.3
TPM1-223ENST00000560445 MTFR1Q15390 333 aa16.91■□□□□ 0.3
TPM1-223ENST00000560445 GIMAP6Q6P9H5 292 aa16.91■□□□□ 0.3
TPM1-223ENST00000560445 KBTBD3Q8NAB2 608 aa16.91■□□□□ 0.3
TPM1-223ENST00000560445 U2AF1L4Q8WU68 220 aaKnown RBP16.91■□□□□ 0.3
TPM1-223ENST00000560445 SLC4A4Q9Y6R1 1079 aa16.91■□□□□ 0.3
TPM1-223ENST00000560445 ELNP15502 786 aa16.9■□□□□ 0.3
TPM1-223ENST00000560445 RGS2P41220 211 aa16.9■□□□□ 0.3
TPM1-223ENST00000560445 RRP1P56182 461 aaKnown RBP16.9■□□□□ 0.3
TPM1-223ENST00000560445 ZYXQ15942 572 aaKnown RBP16.9■□□□□ 0.3
TPM1-223ENST00000560445 LBX2Q6XYB7 198 aa16.9■□□□□ 0.3
TPM1-223ENST00000560445 EDC3Q96F86 508 aaKnown RBP16.9■□□□□ 0.3
TPM1-223ENST00000560445 PAGR1Q9BTK6 254 aa16.9■□□□□ 0.3
TPM1-223ENST00000560445 HOXC10Q9NYD6 342 aa16.9■□□□□ 0.3
TPM1-223ENST00000560445 IVNS1ABPQ9Y6Y0 642 aa16.9■□□□□ 0.3
TPM1-223ENST00000560445 SMARCA5O60264 1052 aaPredicted RBP16.89■□□□□ 0.29
TPM1-223ENST00000560445 FARP2O94887 1054 aaPredicted RBP16.89■□□□□ 0.29
TPM1-223ENST00000560445 SGPL1O95470 568 aa16.89■□□□□ 0.29
TPM1-223ENST00000560445 ICA1Q05084 483 aa16.89■□□□□ 0.29
TPM1-223ENST00000560445 SEPT2Q15019 361 aa16.89■□□□□ 0.29
TPM1-223ENST00000560445 CATSPERGQ6ZRH7 1159 aa16.89■□□□□ 0.29
TPM1-223ENST00000560445 PLEKHH3Q7Z736 793 aa16.89■□□□□ 0.29
TPM1-223ENST00000560445 MB21D1Q8N884 522 aa16.89■□□□□ 0.29
TPM1-223ENST00000560445 APPBP2Q92624 585 aa16.89■□□□□ 0.29
TPM1-223ENST00000560445 UNC93B1Q9H1C4 597 aa16.89■□□□□ 0.29
TPM1-223ENST00000560445 NR2E3Q9Y5X4 410 aa16.89■□□□□ 0.29
TPM1-223ENST00000560445 DOCK3Q8IZD9 2030 aa16.88■□□□□ 0.29
TPM1-223ENST00000560445 SLC34A2O95436 690 aa16.88■□□□□ 0.29
TPM1-223ENST00000560445 TFRCP02786 760 aaKnown RBP16.88■□□□□ 0.29
TPM1-223ENST00000560445 ZKSCAN1P17029 563 aaPredicted RBP16.88■□□□□ 0.29
TPM1-223ENST00000560445 C12orf60Q5U649 245 aa16.88■□□□□ 0.29
TPM1-223ENST00000560445 C16orf86Q6ZW13 317 aa16.88■□□□□ 0.29
TPM1-223ENST00000560445 ANKLE1Q8NAG6 615 aa16.88■□□□□ 0.29
TPM1-223ENST00000560445 APBA2Q99767 749 aa16.88■□□□□ 0.29
TPM1-223ENST00000560445 NACAP1Q9BZK3 213 aa16.88■□□□□ 0.29
TPM1-223ENST00000560445 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.88■□□□□ 0.29
TPM1-223ENST00000560445 RPAP3Q9H6T3 665 aaPredicted RBP16.88■□□□□ 0.29
TPM1-223ENST00000560445 HMX1Q9NP08 348 aaPredicted RBP16.88■□□□□ 0.29
TPM1-223ENST00000560445 PAK6Q9NQU5 681 aaPredicted RBP16.88■□□□□ 0.29
TPM1-223ENST00000560445 RBPJLQ9UBG7 517 aa16.88■□□□□ 0.29
TPM1-223ENST00000560445 RPTORQ8N122 1335 aa16.88■□□□□ 0.29
TPM1-223ENST00000560445 USP17L12C9JPN9 530 aa16.87■□□□□ 0.29
TPM1-223ENST00000560445 USP17L21D6R901 530 aa16.87■□□□□ 0.29
TPM1-223ENST00000560445 RNF113AO15541 343 aaKnown RBP16.87■□□□□ 0.29
TPM1-223ENST00000560445 COG2Q14746 738 aa16.87■□□□□ 0.29
TPM1-223ENST00000560445 SHROOM1Q2M3G4 852 aaPredicted RBP16.87■□□□□ 0.29
TPM1-223ENST00000560445 GPR142Q7Z601 462 aa16.87■□□□□ 0.29
TPM1-223ENST00000560445 SHISA4Q96DD7 197 aa16.87■□□□□ 0.29
TPM1-223ENST00000560445 YTHDC1Q96MU7 727 aaKnown RBP16.87■□□□□ 0.29
TPM1-223ENST00000560445 DEFB118Q96PH6 123 aa16.87■□□□□ 0.29
TPM1-223ENST00000560445 TANGO6Q9C0B7 1094 aa16.87■□□□□ 0.29
TPM1-223ENST00000560445 KANSL2Q9H9L4 492 aa16.87■□□□□ 0.29
TPM1-223ENST00000560445 GJD2Q9UKL4 321 aa16.87■□□□□ 0.29
TPM1-223ENST00000560445 BAZ2AQ9UIF9 1905 aaKnown RBP16.87■□□□□ 0.29
TPM1-223ENST00000560445 CDK8P49336 464 aa16.86■□□□□ 0.29
TPM1-223ENST00000560445 SBK1Q52WX2 424 aa16.86■□□□□ 0.29
TPM1-223ENST00000560445 ACER1Q8TDN7 264 aa16.86■□□□□ 0.29
TPM1-223ENST00000560445 DPF3Q92784 378 aa16.86■□□□□ 0.29
TPM1-223ENST00000560445 GOPCQ9HD26 462 aa16.86■□□□□ 0.29
TPM1-223ENST00000560445 TXNRD2Q9NNW7 524 aa16.86■□□□□ 0.29
TPM1-223ENST00000560445 SLC5A4Q9NY91 659 aa16.86■□□□□ 0.29
TPM1-223ENST00000560445 SLC15A5A6NIM6 579 aa16.85■□□□□ 0.29
TPM1-223ENST00000560445 WDR46O15213 610 aaKnown RBP16.85■□□□□ 0.29
TPM1-223ENST00000560445 PRKAB2O43741 272 aa16.85■□□□□ 0.29
TPM1-223ENST00000560445 SLC3A2P08195 630 aaKnown RBP16.85■□□□□ 0.29
TPM1-223ENST00000560445 MX1P20591 662 aa16.85■□□□□ 0.29
TPM1-223ENST00000560445 GUCY1A2P33402 732 aa16.85■□□□□ 0.29
TPM1-223ENST00000560445 WDR78Q5VTH9 848 aa16.85■□□□□ 0.29
TPM1-223ENST00000560445 STRBPQ96SI9 672 aaKnown RBP16.85■□□□□ 0.29
TPM1-223ENST00000560445 CRISPLD2Q9H0B8 497 aa16.85■□□□□ 0.29
TPM1-223ENST00000560445 PUS7LQ9H0K6 701 aaKnown RBP16.85■□□□□ 0.29
TPM1-223ENST00000560445 MKNK2Q9HBH9 465 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms