RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 ANGEL2Q5VTE6 544 aaKnown RBP7.54□□□□□ -1.2
SPG11-221ENST00000560299 CST9Q5W186 159 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 MAP1SQ66K74 1059 aaPredicted RBP7.54□□□□□ -1.2
SPG11-221ENST00000560299 CPLX2Q6PUV4 134 aaKnown RBP7.54□□□□□ -1.2
SPG11-221ENST00000560299 CHST3Q7LGC8 479 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 SAPCD2Q86UD0 394 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 ZNF274Q96GC6 653 aaPredicted RBP7.54□□□□□ -1.2
SPG11-221ENST00000560299 INTS4Q96HW7 963 aaKnown RBP7.54□□□□□ -1.2
SPG11-221ENST00000560299 CCDC17Q96LX7 622 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 TCEANC2Q96MN5 208 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 LRRC2Q9BYS8 371 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 AGXT2Q9BYV1 514 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 DEFB129Q9H1M3 183 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 DDX4Q9NQI0 724 aaKnown RBP7.54□□□□□ -1.2
SPG11-221ENST00000560299 GGA3Q9NZ52 723 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 FAM198AQ9UFP1 575 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 HERC5Q9UII4 1024 aaKnown RBP7.54□□□□□ -1.2
SPG11-221ENST00000560299 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.54□□□□□ -1.2
SPG11-221ENST00000560299 PCDHAC2Q9Y5I4 1007 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 TLL2Q9Y6L7 1015 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 ATRNL1Q5VV63 1379 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 PAPPA2Q9BXP8 1791 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 CCDC196A0A1B0GTZ2 297 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 TTLL13PA6NNM8 815 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 SH2B2O14492 632 aaPredicted RBP7.53□□□□□ -1.2
SPG11-221ENST00000560299 CD2BP2O95400 341 aaKnown RBP7.53□□□□□ -1.2
SPG11-221ENST00000560299 CALM1P0DP23 149 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 CALM2P0DP24 149 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 CALM3P0DP25 149 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 NF2P35240 595 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 ECE1P42892 770 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 CACNB3P54284 484 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 EVCP57679 992 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 GABPAQ06546 454 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 CUL4AQ13619 759 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 PPP2R5BQ15173 497 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 SLC4A8Q2Y0W8 1093 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 LDLRAD1Q5T700 205 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 IFIT1BQ5T764 474 aaKnown RBP7.53□□□□□ -1.2
SPG11-221ENST00000560299 CYB5R4Q7L1T6 521 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 CATIPQ7Z7H3 387 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 METTL16Q86W50 562 aaKnown RBP7.53□□□□□ -1.2
SPG11-221ENST00000560299 DGKHQ86XP1 1220 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 SPNS2Q8IVW8 549 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 IGDCC4Q8TDY8 1250 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 CCDC102AQ96A19 550 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 DYNLL2Q96FJ2 89 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 CSRNP1Q96S65 589 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 ZSCAN10Q96SZ4 725 aaPredicted RBP7.53□□□□□ -1.2
SPG11-221ENST00000560299 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.53□□□□□ -1.2
SPG11-221ENST00000560299 CABP5Q9NP86 173 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 INCENPQ9NQS7 918 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 TCP11L1Q9NUJ3 509 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 TPCN1Q9ULQ1 816 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 KIF3AQ9Y496 699 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 SLC12A7Q9Y666 1083 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 CNTNAP1P78357 1384 aa7.53□□□□□ -1.2
SPG11-221ENST00000560299 TNKSO95271 1327 aa7.52□□□□□ -1.2
SPG11-221ENST00000560299 THSD7BQ9C0I4 1608 aa7.52□□□□□ -1.2
SPG11-221ENST00000560299 KLF18A0A0U1RQI7 1052 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 SHTN1A0MZ66 631 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 DDTLA6NHG4 134 aaPredicted RBP7.52□□□□□ -1.21
SPG11-221ENST00000560299 CPLX1O14810 134 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 ZBTB43O43298 467 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 TBC1D12O60347 775 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 PFKFB2O60825 505 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 CDKL5O76039 1030 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 RASA1P20936 1047 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 RCAN1P53805 252 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 ANTXR2P58335 489 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 APOBRQ0VD83 1088 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 RASA3Q14644 834 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 ME3Q16798 604 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 CERKLQ49MI3 558 aaPredicted RBP7.52□□□□□ -1.21
SPG11-221ENST00000560299 FAM47AQ5JRC9 791 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 DCAF15Q66K64 600 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 SGMS1Q86VZ5 419 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 C2orf69Q8N8R5 385 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 SPRYD3Q8NCJ5 442 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 NEDD1Q8NHV4 660 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 KLRG1Q96E93 195 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 CDCA5Q96FF9 252 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 TEPSINQ96N21 525 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 LLPHQ9BRT6 129 aaKnown RBP7.52□□□□□ -1.21
SPG11-221ENST00000560299 KAT14Q9H8E8 782 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 GINM1Q9NU53 330 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 SMC3Q9UQE7 1217 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 MYH8P13535 1937 aa7.52□□□□□ -1.21
SPG11-221ENST00000560299 POLR2AP24928 1970 aaKnown RBP7.51□□□□□ -1.21
SPG11-221ENST00000560299 GOLGA8BA8MQT2 603 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 MPHOSPH10O00566 681 aaKnown RBP7.51□□□□□ -1.21
SPG11-221ENST00000560299 CA12O43570 354 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 PPP1R12BO60237 982 aaPredicted RBP7.51□□□□□ -1.21
SPG11-221ENST00000560299 PDCP20941 246 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 PDIA3P30101 505 aaKnown RBP7.51□□□□□ -1.21
SPG11-221ENST00000560299 METAP2P50579 478 aaKnown RBP eCLIP7.51□□□□□ -1.21
SPG11-221ENST00000560299 INHBEP58166 350 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 HMGN5P82970 282 aaKnown RBP7.51□□□□□ -1.21
SPG11-221ENST00000560299 STK3Q13188 491 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 NOGQ13253 232 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms