RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SART3Q15020 963 aaKnown RBP11.89□□□□□ -0.51
USP3-216ENST00000559873 NECTIN1Q15223 517 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 OTUD7BQ6GQQ9 843 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 NBPF3Q9H094 633 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 TMOD4Q9NZQ9 345 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 SYNPO2Q9UMS6 1093 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 CCL15-CCL14A0A0B4J2E2 113 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 ERICH2A1L162 156 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 C19orf81C9J6K1 198 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 E7EWF7 191 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 KDM4AO75164 1064 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 TTLL1O95922 423 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 HSPA4P34932 840 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 BACE1P56817 501 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 ATP2B2Q01814 1243 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 MKRN3Q13064 507 aaKnown RBP11.88□□□□□ -0.51
USP3-216ENST00000559873 SPP2Q13103 211 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 CCL15Q16663 113 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 C8orf34Q49A92 452 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 FAM47AQ5JRC9 791 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 FASTKD5Q7L8L6 764 aaKnown RBP11.88□□□□□ -0.51
USP3-216ENST00000559873 CNKSR2Q8WXI2 1034 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 UBAC1Q9BSL1 405 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 TCP11L1Q9NUJ3 509 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 STX8Q9UNK0 236 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 AFG3L2Q9Y4W6 797 aa11.88□□□□□ -0.51
USP3-216ENST00000559873 GREB1LQ9C091 1923 aaPredicted RBP11.88□□□□□ -0.51
USP3-216ENST00000559873 A0A0G2JLL6 359 aaPredicted RBP11.87□□□□□ -0.51
USP3-216ENST00000559873 B4E1Z4 1266 aa11.87□□□□□ -0.51
USP3-216ENST00000559873 ALDH1A1P00352 501 aa11.87□□□□□ -0.51
USP3-216ENST00000559873 HMGB1P09429 215 aaKnown RBP11.87□□□□□ -0.51
USP3-216ENST00000559873 KIF23Q02241 960 aaPredicted RBP11.87□□□□□ -0.51
USP3-216ENST00000559873 MAP2K1Q02750 393 aaPredicted RBP11.87□□□□□ -0.51
USP3-216ENST00000559873 PABPC4Q13310 644 aaKnown RBP eCLIP11.87□□□□□ -0.51
USP3-216ENST00000559873 MTMR2Q13614 643 aa11.87□□□□□ -0.51
USP3-216ENST00000559873 USP17L2Q6R6M4 530 aa11.87□□□□□ -0.51
USP3-216ENST00000559873 PRRT2Q7Z6L0 340 aaPredicted RBP11.87□□□□□ -0.51
USP3-216ENST00000559873 CCDC84Q86UT8 332 aaPredicted RBP11.87□□□□□ -0.51
USP3-216ENST00000559873 PROCA1Q8NCQ7 364 aaPredicted RBP11.87□□□□□ -0.51
USP3-216ENST00000559873 BEGAINQ9BUH8 593 aa11.87□□□□□ -0.51
USP3-216ENST00000559873 KIAA1683Q9H0B3 1180 aa11.87□□□□□ -0.51
USP3-216ENST00000559873 GOPCQ9HD26 462 aa11.87□□□□□ -0.51
USP3-216ENST00000559873 MTMR4Q9NYA4 1195 aa11.87□□□□□ -0.51
USP3-216ENST00000559873 NYAP2Q9P242 653 aa11.87□□□□□ -0.51
USP3-216ENST00000559873 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.87□□□□□ -0.51
USP3-216ENST00000559873 IGKV6D-41A0A0C4DH26 115 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 EEF2P13639 858 aaKnown RBP11.86□□□□□ -0.51
USP3-216ENST00000559873 PSMA5P28066 241 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 GUCY1A2P33402 732 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 MCM5P33992 734 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 GJA5P36382 358 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 HMGCS2P54868 508 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 JAG1P78504 1218 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 SHROOM1Q2M3G4 852 aaPredicted RBP11.86□□□□□ -0.51
USP3-216ENST00000559873 TSGA10IPQ3SY00 556 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 SH3D19Q5HYK7 790 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 GADL1Q6ZQY3 521 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 LPAR1Q92633 364 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 CEP95Q96GE4 821 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 TTC14Q96N46 770 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 MTA3Q9BTC8 594 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 USP26Q9BXU7 913 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 ZCCHC17Q9NP64 241 aaKnown RBP11.86□□□□□ -0.51
USP3-216ENST00000559873 PNMA3Q9UL41 463 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 TMX2Q9Y320 296 aa11.86□□□□□ -0.51
USP3-216ENST00000559873 TESPA1A2RU30 521 aaPredicted RBP11.85□□□□□ -0.51
USP3-216ENST00000559873 AOC2O75106 756 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 ANAPC15P60006 121 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 STOX1Q6ZVD7 989 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 DGKHQ86XP1 1220 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 CLEC10AQ8IUN9 316 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 KCNB2Q92953 911 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 MS4A4AQ96JQ5 239 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 C12orf42Q96LP6 360 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 NEK1Q96PY6 1258 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 ZSCAN10Q96SZ4 725 aaPredicted RBP11.85□□□□□ -0.51
USP3-216ENST00000559873 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.85□□□□□ -0.51
USP3-216ENST00000559873 VCPKMTQ9H867 229 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 INCENPQ9NQS7 918 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 PHIPQ8WWQ0 1821 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 TNKSO95271 1327 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 WDR19Q8NEZ3 1342 aa11.85□□□□□ -0.51
USP3-216ENST00000559873 LOC285556D6RIA3 1793 aa11.84□□□□□ -0.51
USP3-216ENST00000559873 CA12O43570 354 aa11.84□□□□□ -0.51
USP3-216ENST00000559873 RAD21O60216 631 aa11.84□□□□□ -0.51
USP3-216ENST00000559873 TOP1P11387 765 aaKnown RBP11.84□□□□□ -0.51
USP3-216ENST00000559873 TM4SF4P48230 202 aa11.84□□□□□ -0.51
USP3-216ENST00000559873 ZYXQ15942 572 aaKnown RBP11.84□□□□□ -0.51
USP3-216ENST00000559873 ANKRD23Q86SG2 305 aa11.84□□□□□ -0.51
USP3-216ENST00000559873 MB21D2Q8IYB1 491 aaPredicted RBP11.84□□□□□ -0.51
USP3-216ENST00000559873 BRI3BPQ8WY22 251 aa11.84□□□□□ -0.51
USP3-216ENST00000559873 MKL1Q969V6 931 aa11.84□□□□□ -0.51
USP3-216ENST00000559873 TMEM87BQ96K49 555 aa11.84□□□□□ -0.51
USP3-216ENST00000559873 PARK7Q99497 189 aaKnown RBP11.84□□□□□ -0.51
USP3-216ENST00000559873 KAT14Q9H8E8 782 aa11.84□□□□□ -0.51
USP3-216ENST00000559873 CLIP2Q9UDT6 1046 aa11.84□□□□□ -0.51
USP3-216ENST00000559873 AGTPBP1Q9UPW5 1226 aa11.84□□□□□ -0.51
USP3-216ENST00000559873 SLC45A1Q9Y2W3 748 aa11.84□□□□□ -0.51
USP3-216ENST00000559873 TACC3Q9Y6A5 838 aa11.84□□□□□ -0.51
USP3-216ENST00000559873 PTPRFP10586 1907 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms