RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 SLC15A5A6NIM6 579 aa11.14□□□□□ -0.63
HDDC3-204ENST00000559834 PEX10O60683 326 aa11.14□□□□□ -0.63
HDDC3-204ENST00000559834 MAP2K5Q13163 448 aa11.14□□□□□ -0.63
HDDC3-204ENST00000559834 ZYXQ15942 572 aaKnown RBP11.14□□□□□ -0.63
HDDC3-204ENST00000559834 SHROOM1Q2M3G4 852 aaPredicted RBP11.14□□□□□ -0.63
HDDC3-204ENST00000559834 WDR78Q5VTH9 848 aa11.14□□□□□ -0.63
HDDC3-204ENST00000559834 GPR153Q6NV75 609 aa11.14□□□□□ -0.63
HDDC3-204ENST00000559834 AACSQ86V21 672 aa11.14□□□□□ -0.63
HDDC3-204ENST00000559834 TLR7Q9NYK1 1049 aaKnown RBP11.14□□□□□ -0.63
HDDC3-204ENST00000559834 IVNS1ABPQ9Y6Y0 642 aa11.14□□□□□ -0.63
HDDC3-204ENST00000559834 BRCA2P51587 3418 aa11.13□□□□□ -0.63
HDDC3-204ENST00000559834 MAGEB6P1A0A0J9YX57 407 aa11.13□□□□□ -0.63
HDDC3-204ENST00000559834 MS4A1P11836 297 aa11.13□□□□□ -0.63
HDDC3-204ENST00000559834 MNX1P50219 401 aaPredicted RBP11.13□□□□□ -0.63
HDDC3-204ENST00000559834 HNRNPUQ00839 825 aaKnown RBP eCLIP11.13□□□□□ -0.63
HDDC3-204ENST00000559834 ATP2B2Q01814 1243 aa11.13□□□□□ -0.63
HDDC3-204ENST00000559834 CEP85Q6P2H3 762 aa11.13□□□□□ -0.63
HDDC3-204ENST00000559834 LBX2Q6XYB7 198 aa11.13□□□□□ -0.63
HDDC3-204ENST00000559834 SLC17A8Q8NDX2 589 aa11.13□□□□□ -0.63
HDDC3-204ENST00000559834 CRNKL1Q9BZJ0 848 aaKnown RBP11.13□□□□□ -0.63
HDDC3-204ENST00000559834 ANTXR1Q9H6X2 564 aa11.13□□□□□ -0.63
HDDC3-204ENST00000559834 HOXC10Q9NYD6 342 aa11.13□□□□□ -0.63
HDDC3-204ENST00000559834 ATAD5Q96QE3 1844 aa11.13□□□□□ -0.63
HDDC3-204ENST00000559834 MSCO60682 206 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 RLBP1P12271 317 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 SYN1P17600 705 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 VCAM1P19320 739 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 PTPREP23469 700 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 CCND3P30281 292 aaPredicted RBP11.12□□□□□ -0.63
HDDC3-204ENST00000559834 PLCD1P51178 756 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 COG2Q14746 738 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 CCL14Q16627 93 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 LRIT3Q3SXY7 679 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 SLC9C2Q5TAH2 1124 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 LHX8Q68G74 356 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 CLASRPQ8N2M8 674 aaKnown RBP11.12□□□□□ -0.63
HDDC3-204ENST00000559834 ACER1Q8TDN7 264 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 LRCH3Q96II8 777 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 UBE2OQ9C0C9 1292 aaKnown RBP11.12□□□□□ -0.63
HDDC3-204ENST00000559834 EXOC6BQ9Y2D4 811 aa11.12□□□□□ -0.63
HDDC3-204ENST00000559834 MPHOSPH10O00566 681 aaKnown RBP11.11□□□□□ -0.63
HDDC3-204ENST00000559834 SOX1O00570 391 aaPredicted RBP11.11□□□□□ -0.63
HDDC3-204ENST00000559834 STRNO43815 780 aa11.11□□□□□ -0.63
HDDC3-204ENST00000559834 CNMDO75829 334 aa11.11□□□□□ -0.63
HDDC3-204ENST00000559834 HOXC6P09630 235 aa11.11□□□□□ -0.63
HDDC3-204ENST00000559834 COL6A1P12109 1028 aa11.11□□□□□ -0.63
HDDC3-204ENST00000559834 SHMT1P34896 483 aa11.11□□□□□ -0.63
HDDC3-204ENST00000559834 MAGEA10P43363 369 aaPredicted RBP11.11□□□□□ -0.63
HDDC3-204ENST00000559834 POTEEQ6S8J3 1075 aa11.11□□□□□ -0.63
HDDC3-204ENST00000559834 TDHQ8IZJ6 230 aa11.11□□□□□ -0.63
HDDC3-204ENST00000559834 RHPN1Q8TCX5 695 aa11.11□□□□□ -0.63
HDDC3-204ENST00000559834 RIOK1Q9BRS2 568 aaKnown RBP11.11□□□□□ -0.63
HDDC3-204ENST00000559834 RPAP3Q9H6T3 665 aaPredicted RBP11.11□□□□□ -0.63
HDDC3-204ENST00000559834 MCM9Q9NXL9 1143 aa11.11□□□□□ -0.63
HDDC3-204ENST00000559834 SLC5A4Q9NY91 659 aa11.11□□□□□ -0.63
HDDC3-204ENST00000559834 NDUFB9Q9Y6M9 179 aa11.11□□□□□ -0.63
HDDC3-204ENST00000559834 PFASO15067 1338 aa11.1□□□□□ -0.63
HDDC3-204ENST00000559834 HMMRO75330 724 aa11.1□□□□□ -0.63
HDDC3-204ENST00000559834 IFIT2P09913 472 aaKnown RBP11.1□□□□□ -0.63
HDDC3-204ENST00000559834 PDE6AP16499 860 aa11.1□□□□□ -0.63
HDDC3-204ENST00000559834 CNGA1P29973 690 aa11.1□□□□□ -0.63
HDDC3-204ENST00000559834 GABPAQ06546 454 aa11.1□□□□□ -0.63
HDDC3-204ENST00000559834 SEPT2Q15019 361 aa11.1□□□□□ -0.63
HDDC3-204ENST00000559834 DPP9Q86TI2 863 aa11.1□□□□□ -0.63
HDDC3-204ENST00000559834 RPAP2Q8IXW5 612 aaPredicted RBP11.1□□□□□ -0.63
HDDC3-204ENST00000559834 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.1□□□□□ -0.63
HDDC3-204ENST00000559834 KIF1BPQ96EK5 621 aa11.1□□□□□ -0.63
HDDC3-204ENST00000559834 SENP6Q9GZR1 1112 aaPredicted RBP11.1□□□□□ -0.63
HDDC3-204ENST00000559834 CHMP4BQ9H444 224 aaKnown RBP11.1□□□□□ -0.63
HDDC3-204ENST00000559834 IL1RAPL2Q9NP60 686 aa11.1□□□□□ -0.63
HDDC3-204ENST00000559834 BTBD7Q9P203 1132 aa11.1□□□□□ -0.63
HDDC3-204ENST00000559834 SWAP70Q9UH65 585 aa11.1□□□□□ -0.63
HDDC3-204ENST00000559834 DDX20Q9UHI6 824 aaKnown RBP11.1□□□□□ -0.63
HDDC3-204ENST00000559834 SIPA1L1O43166 1804 aa11.09□□□□□ -0.63
HDDC3-204ENST00000559834 MAST2Q6P0Q8 1798 aa11.09□□□□□ -0.63
HDDC3-204ENST00000559834 SPDYE16A6NNV3 312 aaPredicted RBP11.09□□□□□ -0.63
HDDC3-204ENST00000559834 GUCY1A2P33402 732 aa11.09□□□□□ -0.63
HDDC3-204ENST00000559834 GRB14Q14449 540 aa11.09□□□□□ -0.63
HDDC3-204ENST00000559834 TMEM179Q6ZVK1 233 aa11.09□□□□□ -0.63
HDDC3-204ENST00000559834 DEFB123Q8N688 67 aa11.09□□□□□ -0.63
HDDC3-204ENST00000559834 MB21D1Q8N884 522 aa11.09□□□□□ -0.63
HDDC3-204ENST00000559834 ARRDC4Q8NCT1 418 aa11.09□□□□□ -0.63
HDDC3-204ENST00000559834 LPAR1Q92633 364 aa11.09□□□□□ -0.63
HDDC3-204ENST00000559834 LBHD1Q9BQE6 289 aaPredicted RBP11.09□□□□□ -0.63
HDDC3-204ENST00000559834 PRKAG2Q9UGJ0 569 aa11.09□□□□□ -0.63
HDDC3-204ENST00000559834 ZNF532Q9HCE3 1301 aa11.09□□□□□ -0.63
HDDC3-204ENST00000559834 MYH1P12882 1939 aa11.08□□□□□ -0.64
HDDC3-204ENST00000559834 PLXNB2O15031 1838 aa11.08□□□□□ -0.64
HDDC3-204ENST00000559834 FOCADQ5VW36 1801 aa11.08□□□□□ -0.64
HDDC3-204ENST00000559834 GOLIM4O00461 696 aa11.08□□□□□ -0.64
HDDC3-204ENST00000559834 DLL1O00548 723 aa11.08□□□□□ -0.64
HDDC3-204ENST00000559834 RAB11FIP3O75154 756 aa11.08□□□□□ -0.64
HDDC3-204ENST00000559834 LRRC26Q2I0M4 334 aa11.08□□□□□ -0.64
HDDC3-204ENST00000559834 AMOTL1Q8IY63 956 aa11.08□□□□□ -0.64
HDDC3-204ENST00000559834 SHCBP1Q8NEM2 672 aa11.08□□□□□ -0.64
HDDC3-204ENST00000559834 NPLOC4Q8TAT6 608 aa11.08□□□□□ -0.64
HDDC3-204ENST00000559834 PANK1Q8TE04 598 aa11.08□□□□□ -0.64
HDDC3-204ENST00000559834 DDRGK1Q96HY6 314 aa11.08□□□□□ -0.64
HDDC3-204ENST00000559834 CCDC17Q96LX7 622 aa11.08□□□□□ -0.64
HDDC3-204ENST00000559834 DNAJC2Q99543 621 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 179.6 ms