RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 COL24A1Q17RW2 1714 aa12.21□□□□□ -0.46
CUX1-217ENST00000558836 CUTAO60888 179 aa12.21□□□□□ -0.46
CUX1-217ENST00000558836 ZNF174Q15697 407 aa12.21□□□□□ -0.46
CUX1-217ENST00000558836 RILPL1Q5EBL4 403 aa12.21□□□□□ -0.46
CUX1-217ENST00000558836 TMTC3Q6ZXV5 915 aa12.21□□□□□ -0.46
CUX1-217ENST00000558836 DHX37Q8IY37 1157 aaKnown RBP12.21□□□□□ -0.46
CUX1-217ENST00000558836 CERKQ8TCT0 537 aa12.21□□□□□ -0.46
CUX1-217ENST00000558836 FBXO2Q9UK22 296 aaPredicted RBP12.21□□□□□ -0.46
CUX1-217ENST00000558836 STX8Q9UNK0 236 aa12.21□□□□□ -0.46
CUX1-217ENST00000558836 ZNF827Q17R98 1081 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 C12orf60Q5U649 245 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 GPKOWQ92917 476 aaPredicted RBP eCLIP12.2□□□□□ -0.467e-6■□□□□ 10
CUX1-217ENST00000558836 MTA3Q9BTC8 594 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 CSRNP2Q9H175 543 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 GGA1Q9UJY5 639 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 PCDHA5Q9Y5H7 936 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 NID2Q14112 1375 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 PRPF3O43395 683 aaKnown RBP12.2□□□□□ -0.46
CUX1-217ENST00000558836 ORC4O43929 436 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 SMC2O95347 1197 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 ATP1A3P13637 1013 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 NLRP12P59046 1061 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 MFSD14BQ5SR56 506 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 KRT27Q7Z3Y8 459 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 TSC1Q92574 1164 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 EPSTI1Q96J88 318 aa12.2□□□□□ -0.46
CUX1-217ENST00000558836 MKRN1Q9UHC7 482 aaKnown RBP12.2□□□□□ -0.46
CUX1-217ENST00000558836 PRR29P0C7W0 189 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 GOLGA8HP0CJ92 632 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 CASP1P29466 404 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 KRT2P35908 639 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 BTDP43251 543 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 RBM10P98175 930 aaKnown RBP12.19□□□□□ -0.46
CUX1-217ENST00000558836 KRBA2Q6ZNG9 492 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 PHF20Q9BVI0 1012 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 MXD3Q9BW11 206 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 SERTAD1Q9UHV2 236 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 LY75O60449 1722 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 UQCRHLA0A096LP55 91 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 UQCRHP07919 91 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 TSPY3P0CV98 308 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 TSPY8P0CW00 308 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 XBP1P17861 261 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 PTPREP23469 700 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 CRY2Q49AN0 593 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 RASGRP4Q8TDF6 673 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 RBM17Q96I25 401 aaKnown RBP12.19□□□□□ -0.46
CUX1-217ENST00000558836 KAT14Q9H8E8 782 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 IFNKQ9P0W0 207 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 CNTNAP5Q8WYK1 1306 aa12.19□□□□□ -0.46
CUX1-217ENST00000558836 BAG3O95817 575 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 BMP6P22004 513 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 NPY5RQ15761 445 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 TXNRD1Q16881 649 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 PIK3AP1Q6ZUJ8 805 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 TBC1D16Q8TBP0 767 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 XPO4Q9C0E2 1151 aaKnown RBP12.18□□□□□ -0.46
CUX1-217ENST00000558836 PDS5AQ29RF7 1337 aaKnown RBP12.18□□□□□ -0.46
CUX1-217ENST00000558836 CCDC88AQ3V6T2 1871 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 POLRMTO00411 1230 aaKnown RBP12.18□□□□□ -0.46
CUX1-217ENST00000558836 NLRP5P59047 1200 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 RBM6P78332 1123 aaKnown RBP12.18□□□□□ -0.46
CUX1-217ENST00000558836 GTF2IP78347 998 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 NCAPHQ15003 741 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 SBK1Q52WX2 424 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 PNMA1Q8ND90 353 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 STAMQ92783 540 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 NOL10Q9BSC4 688 aaKnown RBP12.18□□□□□ -0.46
CUX1-217ENST00000558836 RTFDC1Q9BY42 306 aaPredicted RBP12.18□□□□□ -0.46
CUX1-217ENST00000558836 RBM28Q9NW13 759 aaKnown RBP12.18□□□□□ -0.46
CUX1-217ENST00000558836 DDAH1O94760 285 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 ADRA2BP18089 450 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 RCAN1P53805 252 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 SARM1Q6SZW1 724 aa12.18□□□□□ -0.46
CUX1-217ENST00000558836 ZNF444Q8N0Y2 327 aaPredicted RBP12.18□□□□□ -0.46
CUX1-217ENST00000558836 A0A087X0B3 334 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 TRIM75PA6NK02 468 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 CALM1P0DP23 149 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 CALM2P0DP24 149 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 CALM3P0DP25 149 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 AFMP43652 599 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 PICALMQ13492 652 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 MSL1Q68DK7 614 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 TEX11Q8IYF3 940 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 DHX58Q96C10 678 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 C16orf45Q96MC5 204 aaPredicted RBP12.17□□□□□ -0.46
CUX1-217ENST00000558836 SLURP2P0DP57 97 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 PCP11498 1178 aaKnown RBP12.17□□□□□ -0.46
CUX1-217ENST00000558836 DOK7Q18PE1 504 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.17□□□□□ -0.46
CUX1-217ENST00000558836 LRRC8AQ8IWT6 810 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 MRFAP1L1Q96HT8 127 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 TIGD1Q96MW7 591 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 FAM13BQ9NYF5 915 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 TUBE1Q9UJT0 475 aa12.17□□□□□ -0.46
CUX1-217ENST00000558836 VWA3AA6NCI4 1184 aa12.16□□□□□ -0.46
CUX1-217ENST00000558836 SCG2P13521 617 aa12.16□□□□□ -0.46
CUX1-217ENST00000558836 CDC25AP30304 524 aa12.16□□□□□ -0.46
CUX1-217ENST00000558836 MCM7P33993 719 aa12.16□□□□□ -0.46
CUX1-217ENST00000558836 PPP2R5BQ15173 497 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms