RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 KANSL2Q9H9L4 492 aa19.74■□□□□ 0.75
SNX1-203ENST00000558040 MTMR4Q9NYA4 1195 aa19.74■□□□□ 0.75
SNX1-203ENST00000558040 CLEC11AQ9Y240 323 aa19.74■□□□□ 0.75
SNX1-203ENST00000558040 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.74■□□□□ 0.75
SNX1-203ENST00000558040 GREB1LQ9C091 1923 aaPredicted RBP19.73■□□□□ 0.75
SNX1-203ENST00000558040 DDAH1O94760 285 aa19.73■□□□□ 0.75
SNX1-203ENST00000558040 GDF11O95390 407 aa19.73■□□□□ 0.75
SNX1-203ENST00000558040 TTLL1O95922 423 aa19.73■□□□□ 0.75
SNX1-203ENST00000558040 RCSD1Q6JBY9 416 aa19.73■□□□□ 0.75
SNX1-203ENST00000558040 CDC37L1Q7L3B6 337 aa19.73■□□□□ 0.75
SNX1-203ENST00000558040 CCDC83Q8IWF9 413 aa19.73■□□□□ 0.75
SNX1-203ENST00000558040 ZNF654Q8IZM8 581 aa19.73■□□□□ 0.75
SNX1-203ENST00000558040 GTF3C6Q969F1 213 aa19.73■□□□□ 0.75
SNX1-203ENST00000558040 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.73■□□□□ 0.75
SNX1-203ENST00000558040 SENP2Q9HC62 589 aa19.73■□□□□ 0.75
SNX1-203ENST00000558040 GINM1Q9NU53 330 aa19.73■□□□□ 0.75
SNX1-203ENST00000558040 ADM5C9JUS6 153 aa19.72■□□□□ 0.75
SNX1-203ENST00000558040 GH2P01242 217 aa19.72■□□□□ 0.75
SNX1-203ENST00000558040 TOP1P11387 765 aaKnown RBP19.72■□□□□ 0.75
SNX1-203ENST00000558040 NF2P35240 595 aa19.72■□□□□ 0.75
SNX1-203ENST00000558040 CAP2P40123 477 aa19.72■□□□□ 0.75
SNX1-203ENST00000558040 NOVP48745 357 aa19.72■□□□□ 0.75
SNX1-203ENST00000558040 METAP2P50579 478 aaKnown RBP eCLIP19.72■□□□□ 0.75
SNX1-203ENST00000558040 MICU3Q86XE3 530 aa19.72■□□□□ 0.75
SNX1-203ENST00000558040 NECAB1Q8N987 351 aa19.72■□□□□ 0.75
SNX1-203ENST00000558040 NID2Q14112 1375 aa19.71■□□□□ 0.75
SNX1-203ENST00000558040 GOLGA8AA7E2F4 631 aa19.71■□□□□ 0.75
SNX1-203ENST00000558040 CTNND1O60716 968 aaKnown RBP19.71■□□□□ 0.75
SNX1-203ENST00000558040 ICA1Q05084 483 aa19.71■□□□□ 0.75
SNX1-203ENST00000558040 SCRN1Q12765 414 aa19.71■□□□□ 0.75
SNX1-203ENST00000558040 PPP2R5BQ15173 497 aa19.71■□□□□ 0.75
SNX1-203ENST00000558040 PRAMEF18Q5VWM3 479 aa19.71■□□□□ 0.75
SNX1-203ENST00000558040 USP48Q86UV5 1035 aa19.71■□□□□ 0.75
SNX1-203ENST00000558040 LDHDQ86WU2 507 aa19.71■□□□□ 0.75
SNX1-203ENST00000558040 PNMA1Q8ND90 353 aa19.71■□□□□ 0.75
SNX1-203ENST00000558040 TMEM47Q9BQJ4 181 aa19.71■□□□□ 0.75
SNX1-203ENST00000558040 NYAP2Q9P242 653 aa19.71■□□□□ 0.75
SNX1-203ENST00000558040 ZBTB21Q9ULJ3 1066 aa19.71■□□□□ 0.75
SNX1-203ENST00000558040 POLR2AP24928 1970 aaKnown RBP19.7■□□□□ 0.74
SNX1-203ENST00000558040 CCDC196A0A1B0GTZ2 297 aa19.7■□□□□ 0.74
SNX1-203ENST00000558040 PHF20L1A8MW92 1017 aa19.7■□□□□ 0.74
SNX1-203ENST00000558040 ASNSP08243 561 aa19.7■□□□□ 0.74
SNX1-203ENST00000558040 CCT2P78371 535 aaKnown RBP19.7■□□□□ 0.74
SNX1-203ENST00000558040 SEPT2Q15019 361 aa19.7■□□□□ 0.74
SNX1-203ENST00000558040 RAB3GAP1Q15042 981 aa19.7■□□□□ 0.74
SNX1-203ENST00000558040 CPLX2Q6PUV4 134 aaKnown RBP19.7■□□□□ 0.74
SNX1-203ENST00000558040 SPRYD3Q8NCJ5 442 aa19.7■□□□□ 0.74
SNX1-203ENST00000558040 NUP133Q8WUM0 1156 aa19.7■□□□□ 0.74
SNX1-203ENST00000558040 LLPHQ9BRT6 129 aaKnown RBP19.7■□□□□ 0.74
SNX1-203ENST00000558040 HPS5Q9UPZ3 1129 aa19.7■□□□□ 0.74
SNX1-203ENST00000558040 CPLX1O14810 134 aa19.69■□□□□ 0.74
SNX1-203ENST00000558040 PPP1R12BO60237 982 aaPredicted RBP19.69■□□□□ 0.74
SNX1-203ENST00000558040 RRP1BQ14684 758 aaKnown RBP19.69■□□□□ 0.74
SNX1-203ENST00000558040 RTN1Q16799 776 aa19.69■□□□□ 0.74
SNX1-203ENST00000558040 ZNF526Q8TF50 670 aaPredicted RBP19.69■□□□□ 0.74
SNX1-203ENST00000558040 CDCA5Q96FF9 252 aa19.69■□□□□ 0.74
SNX1-203ENST00000558040 MAP3K14Q99558 947 aa19.69■□□□□ 0.74
SNX1-203ENST00000558040 MYL10Q9BUA6 226 aa19.69■□□□□ 0.74
SNX1-203ENST00000558040 CWC22Q9HCG8 908 aaKnown RBP19.69■□□□□ 0.74
SNX1-203ENST00000558040 NMRK2Q9NPI5 230 aa19.69■□□□□ 0.74
SNX1-203ENST00000558040 FOXD4L1Q9NU39 408 aa19.69■□□□□ 0.74
SNX1-203ENST00000558040 RBM28Q9NW13 759 aaKnown RBP19.69■□□□□ 0.74
SNX1-203ENST00000558040 CLIP2Q9UDT6 1046 aa19.69■□□□□ 0.74
SNX1-203ENST00000558040 ZNF112Q9UJU3 913 aa19.69■□□□□ 0.74
SNX1-203ENST00000558040 SSC5DA1L4H1 1573 aa19.69■□□□□ 0.74
SNX1-203ENST00000558040 UTRNP46939 3433 aa19.69■□□□□ 0.74
SNX1-203ENST00000558040 CDKL5O76039 1030 aa19.68■□□□□ 0.74
SNX1-203ENST00000558040 KIF5BP33176 963 aa19.68■□□□□ 0.74
SNX1-203ENST00000558040 GUCY1A2P33402 732 aa19.68■□□□□ 0.74
SNX1-203ENST00000558040 ATP2B2Q01814 1243 aa19.68■□□□□ 0.74
SNX1-203ENST00000558040 ST3GAL1Q11201 340 aa19.68■□□□□ 0.74
SNX1-203ENST00000558040 TROAPQ12815 778 aa19.68■□□□□ 0.74
SNX1-203ENST00000558040 RAB11FIP4Q86YS3 637 aa19.68■□□□□ 0.74
SNX1-203ENST00000558040 FANCBQ8NB91 859 aa19.68■□□□□ 0.74
SNX1-203ENST00000558040 CTCFLQ8NI51 663 aaPredicted RBP19.68■□□□□ 0.74
SNX1-203ENST00000558040 WRNIP1Q96S55 665 aa19.68■□□□□ 0.74
SNX1-203ENST00000558040 GLIS2Q9BZE0 524 aaPredicted RBP19.68■□□□□ 0.74
SNX1-203ENST00000558040 ARHGEF10LQ9HCE6 1279 aa19.68■□□□□ 0.74
SNX1-203ENST00000558040 SYNPO2Q9UMS6 1093 aa19.68■□□□□ 0.74
SNX1-203ENST00000558040 SMC3Q9UQE7 1217 aa19.68■□□□□ 0.74
SNX1-203ENST00000558040 EEF2P13639 858 aaKnown RBP19.67■□□□□ 0.74
SNX1-203ENST00000558040 RXRAP19793 462 aa19.67■□□□□ 0.74
SNX1-203ENST00000558040 SHROOM1Q2M3G4 852 aaPredicted RBP19.67■□□□□ 0.74
SNX1-203ENST00000558040 CLEC10AQ8IUN9 316 aa19.67■□□□□ 0.74
SNX1-203ENST00000558040 MKL1Q969V6 931 aa19.67■□□□□ 0.74
SNX1-203ENST00000558040 SH2D4AQ9H788 454 aa19.67■□□□□ 0.74
SNX1-203ENST00000558040 NCOA5Q9HCD5 579 aaKnown RBP19.67■□□□□ 0.74
SNX1-203ENST00000558040 POTEIP0CG38 1075 aa19.66■□□□□ 0.74
SNX1-203ENST00000558040 POTEJP0CG39 1038 aa19.66■□□□□ 0.74
SNX1-203ENST00000558040 IREB2P48200 963 aaKnown RBP19.66■□□□□ 0.74
SNX1-203ENST00000558040 JAG1P78504 1218 aa19.66■□□□□ 0.74
SNX1-203ENST00000558040 HMGN5P82970 282 aaKnown RBP19.66■□□□□ 0.74
SNX1-203ENST00000558040 MAP1SQ66K74 1059 aaPredicted RBP19.66■□□□□ 0.74
SNX1-203ENST00000558040 CCDC144CPQ8IYA2 1237 aa19.66■□□□□ 0.74
SNX1-203ENST00000558040 SCYL3Q8IZE3 742 aa19.66■□□□□ 0.74
SNX1-203ENST00000558040 LRRC47Q8N1G4 583 aaKnown RBP19.66■□□□□ 0.74
SNX1-203ENST00000558040 KLRG1Q96E93 195 aa19.66■□□□□ 0.74
SNX1-203ENST00000558040 PICK1Q9NRD5 415 aa19.66■□□□□ 0.74
SNX1-203ENST00000558040 ATAD5Q96QE3 1844 aa19.65■□□□□ 0.74
SNX1-203ENST00000558040 DOCK1Q14185 1865 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms