RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 USP17L17D6RBQ6 530 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 USP17L19D6RCP7 530 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 USP17L20D6RJB6 530 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 H0YGN5 161 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 PEX10O60683 326 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 ERVK-9P63128 1117 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 ERVK-24P63145 666 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 USP17L24Q0WX57 530 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 UBE2Q1Q7Z7E8 422 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 NAV1Q8NEY1 1877 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 NUDT12Q9BQG2 462 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.68■□□□□ 0.426e-7■□□□□ 8.9
SHMT2-235ENST00000557740 ARMT1Q9H993 441 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 CWC22Q9HCG8 908 aaKnown RBP17.68■□□□□ 0.42
SHMT2-235ENST00000557740 DCP1AQ9NPI6 582 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-235ENST00000557740 GJD2Q9UKL4 321 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 MPHOSPH10O00566 681 aaKnown RBP17.67■□□□□ 0.42
SHMT2-235ENST00000557740 MBD4O95243 580 aa17.67■□□□□ 0.42
SHMT2-235ENST00000557740 VCAM1P19320 739 aa17.67■□□□□ 0.42
SHMT2-235ENST00000557740 ADD2P35612 726 aa17.67■□□□□ 0.42
SHMT2-235ENST00000557740 GABPAQ06546 454 aa17.67■□□□□ 0.42
SHMT2-235ENST00000557740 HAUS7Q99871 368 aa17.67■□□□□ 0.42
SHMT2-235ENST00000557740 RBPJLQ9UBG7 517 aa17.67■□□□□ 0.42
SHMT2-235ENST00000557740 CYP2B6P20813 491 aa17.66■□□□□ 0.42
SHMT2-235ENST00000557740 SEPT2Q15019 361 aa17.66■□□□□ 0.42
SHMT2-235ENST00000557740 AMOTL1Q8IY63 956 aa17.66■□□□□ 0.42
SHMT2-235ENST00000557740 ACER1Q8TDN7 264 aa17.66■□□□□ 0.42
SHMT2-235ENST00000557740 DDRGK1Q96HY6 314 aa17.66■□□□□ 0.42
SHMT2-235ENST00000557740 RABGAP1Q9Y3P9 1069 aa17.66■□□□□ 0.42
SHMT2-235ENST00000557740 CYP2D6P10635 497 aa17.65■□□□□ 0.42
SHMT2-235ENST00000557740 CCNA1P78396 465 aa17.65■□□□□ 0.42
SHMT2-235ENST00000557740 GPR142Q7Z601 462 aa17.65■□□□□ 0.42
SHMT2-235ENST00000557740 PLEKHH3Q7Z736 793 aa17.65■□□□□ 0.42
SHMT2-235ENST00000557740 TRMT44Q8IYL2 757 aaKnown RBP17.65■□□□□ 0.42
SHMT2-235ENST00000557740 TRIB2Q92519 343 aa17.65■□□□□ 0.42
SHMT2-235ENST00000557740 CRISPLD2Q9H0B8 497 aa17.65■□□□□ 0.42
SHMT2-235ENST00000557740 PORCNQ9H237 461 aa17.65■□□□□ 0.42
SHMT2-235ENST00000557740 SWAP70Q9UH65 585 aa17.65■□□□□ 0.42
SHMT2-235ENST00000557740 COLQQ9Y215 455 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-235ENST00000557740 NR2E3Q9Y5X4 410 aa17.65■□□□□ 0.42
SHMT2-235ENST00000557740 DOCK3Q8IZD9 2030 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 PRKAB2O43741 272 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 SMARCA5O60264 1052 aaPredicted RBP17.64■□□□□ 0.41
SHMT2-235ENST00000557740 ZKSCAN1P17029 563 aaPredicted RBP17.64■□□□□ 0.41
SHMT2-235ENST00000557740 GUCY1A2P33402 732 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 RGS2P41220 211 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 EVX2Q03828 476 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 TRIM32Q13049 653 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 Q3C1V9 767 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 SLFNL1Q499Z3 407 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 ZSCAN25Q6NSZ9 544 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 CATSPERGQ6ZRH7 1159 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 SLC44A5Q8NCS7 719 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 APBA2Q99767 749 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 RPAP3Q9H6T3 665 aaPredicted RBP17.64■□□□□ 0.41
SHMT2-235ENST00000557740 HMX1Q9NP08 348 aaPredicted RBP17.64■□□□□ 0.41
SHMT2-235ENST00000557740 ATP8A2Q9NTI2 1148 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 RPTORQ8N122 1335 aa17.64■□□□□ 0.41
SHMT2-235ENST00000557740 GLRX3O76003 335 aaKnown RBP17.63■□□□□ 0.41
SHMT2-235ENST00000557740 XRCC5P13010 732 aaKnown RBP17.63■□□□□ 0.41
SHMT2-235ENST00000557740 UBE3CQ15386 1083 aa17.63■□□□□ 0.41
SHMT2-235ENST00000557740 WDR78Q5VTH9 848 aa17.63■□□□□ 0.41
SHMT2-235ENST00000557740 TMEM179Q6ZVK1 233 aa17.63■□□□□ 0.41
SHMT2-235ENST00000557740 DYNLL2Q96FJ2 89 aa17.63■□□□□ 0.41
SHMT2-235ENST00000557740 GPATCH3Q96I76 525 aa17.63■□□□□ 0.41
SHMT2-235ENST00000557740 PCDH10Q9P2E7 1040 aa17.63■□□□□ 0.41
SHMT2-235ENST00000557740 PRKAR2AP13861 404 aaKnown RBP17.62■□□□□ 0.41
SHMT2-235ENST00000557740 POTEEQ6S8J3 1075 aa17.62■□□□□ 0.41
SHMT2-235ENST00000557740 CHRDL2Q6WN34 429 aa17.62■□□□□ 0.41
SHMT2-235ENST00000557740 LBX2Q6XYB7 198 aa17.62■□□□□ 0.41
SHMT2-235ENST00000557740 TANGO6Q9C0B7 1094 aa17.62■□□□□ 0.41
SHMT2-235ENST00000557740 ECHDC1Q9NTX5 307 aa17.62■□□□□ 0.41
SHMT2-235ENST00000557740 SPDYE16A6NNV3 312 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-235ENST00000557740 EVI5O60447 810 aa17.61■□□□□ 0.41
SHMT2-235ENST00000557740 CNMDO75829 334 aa17.61■□□□□ 0.41
SHMT2-235ENST00000557740 ICA1Q05084 483 aa17.61■□□□□ 0.41
SHMT2-235ENST00000557740 MORN1Q5T089 497 aa17.61■□□□□ 0.41
SHMT2-235ENST00000557740 NECAB2Q7Z6G3 386 aa17.61■□□□□ 0.41
SHMT2-235ENST00000557740 ANKLE1Q8NAG6 615 aa17.61■□□□□ 0.41
SHMT2-235ENST00000557740 PAWRQ96IZ0 340 aaKnown RBP17.61■□□□□ 0.41
SHMT2-235ENST00000557740 SH2D4AQ9H788 454 aa17.61■□□□□ 0.41
SHMT2-235ENST00000557740 SLC4A4Q9Y6R1 1079 aa17.61■□□□□ 0.41
SHMT2-235ENST00000557740 IVNS1ABPQ9Y6Y0 642 aa17.61■□□□□ 0.41
SHMT2-235ENST00000557740 TRIOBPQ9H2D6 2365 aa17.61■□□□□ 0.41
SHMT2-235ENST00000557740 CHGBP05060 677 aa17.6■□□□□ 0.41
SHMT2-235ENST00000557740 MAP2K5Q13163 448 aa17.6■□□□□ 0.41
SHMT2-235ENST00000557740 MAP3K21Q5TCX8 1036 aa17.6■□□□□ 0.41
SHMT2-235ENST00000557740 DIS3LQ8TF46 1054 aaKnown RBP17.6■□□□□ 0.41
SHMT2-235ENST00000557740 USP6NLQ92738 828 aa17.6■□□□□ 0.41
SHMT2-235ENST00000557740 CCDC17Q96LX7 622 aa17.6■□□□□ 0.41
SHMT2-235ENST00000557740 ARHGEF10LQ9HCE6 1279 aa17.6■□□□□ 0.41
SHMT2-235ENST00000557740 CYP2D7A0A087X1C5 515 aa17.59■□□□□ 0.41
SHMT2-235ENST00000557740 A0A1W2PRG0 241 aa17.59■□□□□ 0.41
SHMT2-235ENST00000557740 USP17L12C9JPN9 530 aa17.59■□□□□ 0.41
SHMT2-235ENST00000557740 USP17L21D6R901 530 aa17.59■□□□□ 0.41
SHMT2-235ENST00000557740 AKR1B1P15121 316 aa17.59■□□□□ 0.41
SHMT2-235ENST00000557740 CDK8P49336 464 aa17.59■□□□□ 0.41
SHMT2-235ENST00000557740 FXR1P51114 621 aaKnown RBP eCLIP17.59■□□□□ 0.41
SHMT2-235ENST00000557740 CCL14Q16627 93 aa17.59■□□□□ 0.41
SHMT2-235ENST00000557740 C12orf60Q5U649 245 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms