RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 USP17L11C9JVI0 530 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 USP17L18D6R9N7 530 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 USP17L22D6RA61 530 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 USP17L17D6RBQ6 530 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 USP17L19D6RCP7 530 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 USP17L20D6RJB6 530 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 RAB11FIP3O75154 756 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 PDE6AP16499 860 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 USP14P54578 494 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 USP17L24Q0WX57 530 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 TRIM32Q13049 653 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 PDE3AQ14432 1141 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 Q3C1V9 767 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 SIRT2Q8IXJ6 389 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 SOCS4Q8WXH5 440 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 C12orf42Q96LP6 360 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 MCM9Q9NXL9 1143 aa13.42□□□□□ -0.26
CCDC88C-213ENST00000557455 TRIOBPQ9H2D6 2365 aa13.41□□□□□ -0.26
CCDC88C-213ENST00000557455 EVI5O60447 810 aa13.41□□□□□ -0.26
CCDC88C-213ENST00000557455 SHMT1P34896 483 aa13.41□□□□□ -0.26
CCDC88C-213ENST00000557455 NECAB2Q7Z6G3 386 aa13.41□□□□□ -0.26
CCDC88C-213ENST00000557455 ANKLE1Q8NAG6 615 aa13.41□□□□□ -0.26
CCDC88C-213ENST00000557455 TRIB2Q92519 343 aa13.41□□□□□ -0.26
CCDC88C-213ENST00000557455 PAWRQ96IZ0 340 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-213ENST00000557455 KIAA1683Q9H0B3 1180 aa13.41□□□□□ -0.26
CCDC88C-213ENST00000557455 PORCNQ9H237 461 aa13.41□□□□□ -0.26
CCDC88C-213ENST00000557455 CWC22Q9HCG8 908 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-213ENST00000557455 BAZ2AQ9UIF9 1905 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-213ENST00000557455 XRCC5P13010 732 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-213ENST00000557455 CATSPERGQ6ZRH7 1159 aa13.4□□□□□ -0.26
CCDC88C-213ENST00000557455 GPR142Q7Z601 462 aa13.4□□□□□ -0.26
CCDC88C-213ENST00000557455 PLEKHH3Q7Z736 793 aa13.4□□□□□ -0.26
CCDC88C-213ENST00000557455 TRMT44Q8IYL2 757 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-213ENST00000557455 LCORLQ8N3X6 602 aa13.4□□□□□ -0.26
CCDC88C-213ENST00000557455 ACER1Q8TDN7 264 aa13.4□□□□□ -0.26
CCDC88C-213ENST00000557455 SDR42E1Q8WUS8 393 aa13.4□□□□□ -0.26
CCDC88C-213ENST00000557455 BOLA2Q9H3K6 86 aa13.4□□□□□ -0.26
CCDC88C-213ENST00000557455 PAG1Q9NWQ8 432 aa13.4□□□□□ -0.26
CCDC88C-213ENST00000557455 RBM27Q9P2N5 1060 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-213ENST00000557455 RCAN3Q9UKA8 241 aa13.4□□□□□ -0.26
CCDC88C-213ENST00000557455 TCRBV5S4A2TA0A5A2 114 aa13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 MPHOSPH10O00566 681 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 PRKAR2AP13861 404 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 ZKSCAN1P17029 563 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 VCAM1P19320 739 aa13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 RGS2P41220 211 aa13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 CCNA1P78396 465 aa13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 GABPAQ06546 454 aa13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 SEPT2Q15019 361 aa13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 POTEEQ6S8J3 1075 aa13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 DIS3LQ8TF46 1054 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 EDC3Q96F86 508 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 DCP1AQ9NPI6 582 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 RABGAP1Q9Y3P9 1069 aa13.39□□□□□ -0.27
CCDC88C-213ENST00000557455 SZT2Q5T011 3432 aa13.38□□□□□ -0.27
CCDC88C-213ENST00000557455 CNMDO75829 334 aa13.38□□□□□ -0.27
CCDC88C-213ENST00000557455 GLRX3O76003 335 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-213ENST00000557455 ATP5JP18859 108 aa13.38□□□□□ -0.27
CCDC88C-213ENST00000557455 GUCY1A2P33402 732 aa13.38□□□□□ -0.27
CCDC88C-213ENST00000557455 EVX2Q03828 476 aa13.38□□□□□ -0.27
CCDC88C-213ENST00000557455 MORN1Q5T089 497 aa13.38□□□□□ -0.27
CCDC88C-213ENST00000557455 MAP3K21Q5TCX8 1036 aa13.38□□□□□ -0.27
CCDC88C-213ENST00000557455 USP6NLQ92738 828 aa13.38□□□□□ -0.27
CCDC88C-213ENST00000557455 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.38□□□□□ -0.27
CCDC88C-213ENST00000557455 RPAP3Q9H6T3 665 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-213ENST00000557455 ARMT1Q9H993 441 aa13.38□□□□□ -0.27
CCDC88C-213ENST00000557455 RANBP2P49792 3224 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-213ENST00000557455 ADD2P35612 726 aa13.37□□□□□ -0.27
CCDC88C-213ENST00000557455 CACNB2Q08289 660 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-213ENST00000557455 MAP2K5Q13163 448 aa13.37□□□□□ -0.27
CCDC88C-213ENST00000557455 CCL14Q16627 93 aa13.37□□□□□ -0.27
CCDC88C-213ENST00000557455 WDR78Q5VTH9 848 aa13.37□□□□□ -0.27
CCDC88C-213ENST00000557455 LBX2Q6XYB7 198 aa13.37□□□□□ -0.27
CCDC88C-213ENST00000557455 APBA2Q99767 749 aa13.37□□□□□ -0.27
CCDC88C-213ENST00000557455 HAUS7Q99871 368 aa13.37□□□□□ -0.27
CCDC88C-213ENST00000557455 NBPF3Q9H094 633 aa13.37□□□□□ -0.27
CCDC88C-213ENST00000557455 ATP8A2Q9NTI2 1148 aa13.37□□□□□ -0.27
CCDC88C-213ENST00000557455 SWAP70Q9UH65 585 aa13.37□□□□□ -0.27
CCDC88C-213ENST00000557455 OGDHLQ9ULD0 1010 aa13.37□□□□□ -0.27
CCDC88C-213ENST00000557455 FRMPD3Q5JV73 1810 aa13.36□□□□□ -0.27
CCDC88C-213ENST00000557455 PRKAB2O43741 272 aa13.36□□□□□ -0.27
CCDC88C-213ENST00000557455 MBD4O95243 580 aa13.36□□□□□ -0.27
CCDC88C-213ENST00000557455 CYP2D6P10635 497 aa13.36□□□□□ -0.27
CCDC88C-213ENST00000557455 SLFNL1Q499Z3 407 aa13.36□□□□□ -0.27
CCDC88C-213ENST00000557455 TMEM179Q6ZVK1 233 aa13.36□□□□□ -0.27
CCDC88C-213ENST00000557455 AMOTL1Q8IY63 956 aa13.36□□□□□ -0.27
CCDC88C-213ENST00000557455 LRRCC1Q9C099 1032 aa13.36□□□□□ -0.27
CCDC88C-213ENST00000557455 PRO3102Q9H379 93 aa13.36□□□□□ -0.27
CCDC88C-213ENST00000557455 C11orf49Q9H6J7 331 aa13.36□□□□□ -0.27
CCDC88C-213ENST00000557455 BTBD7Q9P203 1132 aa13.36□□□□□ -0.27
CCDC88C-213ENST00000557455 IVNS1ABPQ9Y6Y0 642 aa13.36□□□□□ -0.27
CCDC88C-213ENST00000557455 RLFQ13129 1914 aa13.35□□□□□ -0.27
CCDC88C-213ENST00000557455 A0A1W2PRG0 241 aa13.35□□□□□ -0.27
CCDC88C-213ENST00000557455 SLC15A5A6NIM6 579 aa13.35□□□□□ -0.27
CCDC88C-213ENST00000557455 SPDYE16A6NNV3 312 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-213ENST00000557455 PTPREP23469 700 aa13.35□□□□□ -0.27
CCDC88C-213ENST00000557455 CCND3P30281 292 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-213ENST00000557455 MNX1P50219 401 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-213ENST00000557455 ZSCAN25Q6NSZ9 544 aa13.35□□□□□ -0.27
CCDC88C-213ENST00000557455 C7orf61Q8IZ16 206 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms