RNA–Protein interactions for RNA: ENST00000556867.1

TDP1-216, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 748 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-216ENST00000556867 PKN2Q16513 984 aaKnown RBP27.29■■□□□ 1.96
TDP1-216ENST00000556867 USP17L2Q6R6M4 530 aa27.29■■□□□ 1.96
TDP1-216ENST00000556867 C12orf42Q96LP6 360 aa27.29■■□□□ 1.96
TDP1-216ENST00000556867 CPA4Q9UI42 421 aa27.29■■□□□ 1.96
TDP1-216ENST00000556867 CCDC171Q6TFL3 1326 aa27.28■■□□□ 1.96
TDP1-216ENST00000556867 HIP1O00291 1037 aa27.28■■□□□ 1.96
TDP1-216ENST00000556867 VPS53Q5VIR6 699 aa27.28■■□□□ 1.96
TDP1-216ENST00000556867 ZNF589Q86UQ0 364 aaPredicted RBP27.28■■□□□ 1.96
TDP1-216ENST00000556867 ACER1Q8TDN7 264 aa27.28■■□□□ 1.96
TDP1-216ENST00000556867 EMILIN3Q9NT22 766 aa27.28■■□□□ 1.96
TDP1-216ENST00000556867 BCRP11274 1271 aa27.27■■□□□ 1.96
TDP1-216ENST00000556867 HOXA7P31268 230 aaPredicted RBP27.27■■□□□ 1.96
TDP1-216ENST00000556867 USP14P54578 494 aa27.27■■□□□ 1.96
TDP1-216ENST00000556867 ABHD8Q96I13 439 aa27.27■■□□□ 1.96
TDP1-216ENST00000556867 DIAPH3Q9NSV4 1193 aa27.27■■□□□ 1.96
TDP1-216ENST00000556867 RASA1P20936 1047 aa27.26■■□□□ 1.95
TDP1-216ENST00000556867 LACTBP83111 547 aaPredicted RBP27.26■■□□□ 1.95
TDP1-216ENST00000556867 CAP1Q01518 475 aa27.26■■□□□ 1.95
TDP1-216ENST00000556867 ALX1Q15699 326 aa27.26■■□□□ 1.95
TDP1-216ENST00000556867 OTOP1Q7RTM1 612 aa27.26■■□□□ 1.95
TDP1-216ENST00000556867 SMCR8Q8TEV9 937 aaPredicted RBP27.26■■□□□ 1.95
TDP1-216ENST00000556867 ZNF287Q9HBT7 754 aa27.26■■□□□ 1.95
TDP1-216ENST00000556867 OSBPP22059 807 aa27.25■■□□□ 1.95
TDP1-216ENST00000556867 MFAP1P55081 439 aaKnown RBP27.25■■□□□ 1.95
TDP1-216ENST00000556867 PPARAQ07869 468 aa27.25■■□□□ 1.95
TDP1-216ENST00000556867 ASCC2Q9H1I8 757 aaPredicted RBP27.25■■□□□ 1.95
TDP1-216ENST00000556867 MKNK2Q9HBH9 465 aa27.25■■□□□ 1.95
TDP1-216ENST00000556867 TRIM17Q9Y577 477 aa27.25■■□□□ 1.95
TDP1-216ENST00000556867 ZSWIM8A7E2V4 1837 aa27.25■■□□□ 1.95
TDP1-216ENST00000556867 ZMYM6O95789 1325 aa27.24■■□□□ 1.95
TDP1-216ENST00000556867 NEFLP07196 543 aa27.24■■□□□ 1.95
TDP1-216ENST00000556867 ICA1Q05084 483 aa27.24■■□□□ 1.95
TDP1-216ENST00000556867 ARHGEF6Q15052 776 aa27.24■■□□□ 1.95
TDP1-216ENST00000556867 ZYXQ15942 572 aaKnown RBP27.24■■□□□ 1.95
TDP1-216ENST00000556867 STK11IPQ8N1F8 1099 aa27.24■■□□□ 1.95
TDP1-216ENST00000556867 EFCC1Q9HA90 598 aa27.24■■□□□ 1.95
TDP1-216ENST00000556867 A0A1W2PRG0 241 aa27.23■■□□□ 1.95
TDP1-216ENST00000556867 SLC3A2P08195 630 aaKnown RBP27.23■■□□□ 1.95
TDP1-216ENST00000556867 HSPD1P10809 573 aaKnown RBP27.23■■□□□ 1.95
TDP1-216ENST00000556867 KIF22Q14807 665 aa27.23■■□□□ 1.95
TDP1-216ENST00000556867 FBXO46Q6PJ61 603 aaPredicted RBP27.23■■□□□ 1.95
TDP1-216ENST00000556867 CWC27Q6UX04 472 aaKnown RBP27.23■■□□□ 1.95
TDP1-216ENST00000556867 CLEC10AQ8IUN9 316 aa27.23■■□□□ 1.95
TDP1-216ENST00000556867 SIAH1Q8IUQ4 282 aa27.23■■□□□ 1.95
TDP1-216ENST00000556867 ARHGEF10LQ9HCE6 1279 aa27.23■■□□□ 1.95
TDP1-216ENST00000556867 CENPBP07199 599 aaPredicted RBP27.22■■□□□ 1.95
TDP1-216ENST00000556867 GCLCP48506 637 aaPredicted RBP27.22■■□□□ 1.95
TDP1-216ENST00000556867 IRX3P78415 501 aaPredicted RBP27.22■■□□□ 1.95
TDP1-216ENST00000556867 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.22■■□□□ 1.95
TDP1-216ENST00000556867 KANSL2Q9H9L4 492 aa27.22■■□□□ 1.95
TDP1-216ENST00000556867 ANAPC4Q9UJX5 808 aa27.22■■□□□ 1.95
TDP1-216ENST00000556867 MGAMO43451 1857 aa27.21■■□□□ 1.95
TDP1-216ENST00000556867 VCAM1P19320 739 aa27.21■■□□□ 1.95
TDP1-216ENST00000556867 PDE4BQ07343 736 aa27.21■■□□□ 1.95
TDP1-216ENST00000556867 ARHGAP39Q9C0H5 1083 aa27.21■■□□□ 1.95
TDP1-216ENST00000556867 SH2D4AQ9H788 454 aa27.21■■□□□ 1.95
TDP1-216ENST00000556867 TMX2Q9Y320 296 aa27.21■■□□□ 1.95
TDP1-216ENST00000556867 FGAP02671 866 aa27.2■■□□□ 1.94
TDP1-216ENST00000556867 FAM110CQ1W6H9 321 aa27.2■■□□□ 1.94
TDP1-216ENST00000556867 DDX52Q9Y2R4 599 aaKnown RBP eCLIP27.2■■□□□ 1.94
TDP1-216ENST00000556867 PLIN4Q96Q06 1357 aa27.2■■□□□ 1.94
TDP1-216ENST00000556867 PRDM1O75626 825 aa27.19■■□□□ 1.94
TDP1-216ENST00000556867 GNRH1P01148 92 aa27.19■■□□□ 1.94
TDP1-216ENST00000556867 ZNF444Q8N0Y2 327 aaPredicted RBP27.19■■□□□ 1.94
TDP1-216ENST00000556867 CCDC136Q96JN2 1154 aa27.19■■□□□ 1.94
TDP1-216ENST00000556867 HTTP42858 3142 aa27.19■■□□□ 1.94
TDP1-216ENST00000556867 USP17L15C9J2P7 530 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 USP17L13C9JLJ4 530 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 USP17L11C9JVI0 530 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 USP17L18D6R9N7 530 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 USP17L22D6RA61 530 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 USP17L17D6RBQ6 530 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 USP17L19D6RCP7 530 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 USP17L20D6RJB6 530 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 EEF2P13639 858 aaKnown RBP27.18■■□□□ 1.94
TDP1-216ENST00000556867 CTGFP29279 349 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 HERVK_113P62684 666 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 USP17L24Q0WX57 530 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 ANKRD13CQ8N6S4 541 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 P2RX7Q99572 595 aaKnown RBP27.18■■□□□ 1.94
TDP1-216ENST00000556867 HPS5Q9UPZ3 1129 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 PTPN22Q9Y2R2 807 aa27.18■■□□□ 1.94
TDP1-216ENST00000556867 IGKV6D-41A0A0C4DH26 115 aa27.17■■□□□ 1.94
TDP1-216ENST00000556867 PSMC4P43686 418 aa27.17■■□□□ 1.94
TDP1-216ENST00000556867 CTDSPL2Q05D32 466 aa27.17■■□□□ 1.94
TDP1-216ENST00000556867 LPAR1Q92633 364 aa27.17■■□□□ 1.94
TDP1-216ENST00000556867 TRIM47Q96LD4 638 aa27.17■■□□□ 1.94
TDP1-216ENST00000556867 LAMA4Q16363 1823 aa27.17■■□□□ 1.94
TDP1-216ENST00000556867 RAD50Q92878 1312 aa27.16■■□□□ 1.94
TDP1-216ENST00000556867 CATSPERGQ6ZRH7 1159 aa27.16■■□□□ 1.94
TDP1-216ENST00000556867 GTF3C2Q8WUA4 911 aaPredicted RBP27.16■■□□□ 1.94
TDP1-216ENST00000556867 RPAP3Q9H6T3 665 aaPredicted RBP27.16■■□□□ 1.94
TDP1-216ENST00000556867 VCPKMTQ9H867 229 aa27.16■■□□□ 1.94
TDP1-216ENST00000556867 NYAP2Q9P242 653 aa27.16■■□□□ 1.94
TDP1-216ENST00000556867 MORF4L1Q9UBU8 362 aa27.16■■□□□ 1.94
TDP1-216ENST00000556867 MYH4Q9Y623 1939 aa27.16■■□□□ 1.94
TDP1-216ENST00000556867 FCGRTP55899 365 aa27.15■■□□□ 1.94
TDP1-216ENST00000556867 ATP2B2Q01814 1243 aa27.15■■□□□ 1.94
TDP1-216ENST00000556867 KIAA1755Q5JYT7 1200 aa27.15■■□□□ 1.94
TDP1-216ENST00000556867 NEDD1Q8NHV4 660 aa27.15■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms