RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 C19orf81C9J6K1 198 aa13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 PDHXO00330 501 aa13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 RANBP6O60518 1105 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 TSPY3P0CV98 308 aa13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 TSPY8P0CW00 308 aa13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 HSPA8P11142 646 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 LBX1P52954 281 aa13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 ICA1Q05084 483 aa13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 DGKZQ13574 1117 aa13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 IMMTQ16891 758 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 FAM47AQ5JRC9 791 aa13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 ANKRD23Q86SG2 305 aa13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 CLEC10AQ8IUN9 316 aa13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 ACER1Q8TDN7 264 aa13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 ESYT1Q9BSJ8 1104 aa13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 ARHGEF10LQ9HCE6 1279 aa13.59□□□□□ -0.23
CCDC88C-212ENST00000556767 RAD21O60216 631 aa13.58□□□□□ -0.24
CCDC88C-212ENST00000556767 TFAP4Q01664 338 aa13.58□□□□□ -0.24
CCDC88C-212ENST00000556767 PTH1RQ03431 593 aa13.58□□□□□ -0.24
CCDC88C-212ENST00000556767 USP17L2Q6R6M4 530 aa13.58□□□□□ -0.24
CCDC88C-212ENST00000556767 MFSD6Q6ZSS7 791 aa13.58□□□□□ -0.24
CCDC88C-212ENST00000556767 RNF41Q9H4P4 317 aaPredicted RBP13.58□□□□□ -0.24
CCDC88C-212ENST00000556767 KANSL2Q9H9L4 492 aa13.58□□□□□ -0.24
CCDC88C-212ENST00000556767 ZFYVE28Q9HCC9 887 aa13.58□□□□□ -0.24
CCDC88C-212ENST00000556767 ANAPC4Q9UJX5 808 aa13.58□□□□□ -0.24
CCDC88C-212ENST00000556767 TSPY2A6NKD2 308 aa13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 USP14P54578 494 aa13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 CRHR2Q13324 411 aa13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 MOGSQ13724 837 aa13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 AKNAD1Q5T1N1 836 aa13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 TREML2Q5T2D2 321 aa13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 GPAT2Q6NUI2 795 aa13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 TBC1D10CQ8IV04 446 aa13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 PROCA1Q8NCQ7 364 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 SH2D4AQ9H788 454 aa13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 ANO2Q9NQ90 1003 aa13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 AGTPBP1Q9UPW5 1226 aa13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 U3KPZ7 1027 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-212ENST00000556767 PTPRFP10586 1907 aa13.56□□□□□ -0.24
CCDC88C-212ENST00000556767 EEF2P13639 858 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-212ENST00000556767 OSBPP22059 807 aa13.56□□□□□ -0.24
CCDC88C-212ENST00000556767 PABPC4Q13310 644 aaKnown RBP eCLIP13.56□□□□□ -0.24
CCDC88C-212ENST00000556767 SH3D19Q5HYK7 790 aa13.56□□□□□ -0.24
CCDC88C-212ENST00000556767 PARK7Q99497 189 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-212ENST00000556767 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.56□□□□□ -0.24
CCDC88C-212ENST00000556767 KIAA1683Q9H0B3 1180 aa13.56□□□□□ -0.24
CCDC88C-212ENST00000556767 R3HDMLQ9H3Y0 253 aa13.56□□□□□ -0.24
CCDC88C-212ENST00000556767 ZCCHC17Q9NP64 241 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-212ENST00000556767 EMILIN3Q9NT22 766 aa13.56□□□□□ -0.24
CCDC88C-212ENST00000556767 TACC3Q9Y6A5 838 aa13.56□□□□□ -0.24
CCDC88C-212ENST00000556767 A0A1W2PRG0 241 aa13.55□□□□□ -0.24
CCDC88C-212ENST00000556767 GPR25O00155 361 aa13.55□□□□□ -0.24
CCDC88C-212ENST00000556767 ORC4O43929 436 aa13.55□□□□□ -0.24
CCDC88C-212ENST00000556767 CYP2C8P10632 490 aa13.55□□□□□ -0.24
CCDC88C-212ENST00000556767 NEDD1Q8NHV4 660 aa13.55□□□□□ -0.24
CCDC88C-212ENST00000556767 SMCR8Q8TEV9 937 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-212ENST00000556767 STAG1Q8WVM7 1258 aa13.55□□□□□ -0.24
CCDC88C-212ENST00000556767 NBPF3Q9H094 633 aa13.55□□□□□ -0.24
CCDC88C-212ENST00000556767 CLIP2Q9UDT6 1046 aa13.55□□□□□ -0.24
CCDC88C-212ENST00000556767 PNMA3Q9UL41 463 aa13.55□□□□□ -0.24
CCDC88C-212ENST00000556767 RBM8AQ9Y5S9 174 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-212ENST00000556767 FGRP09769 529 aa13.54□□□□□ -0.24
CCDC88C-212ENST00000556767 PCP11498 1178 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-212ENST00000556767 IRX3P78415 501 aaPredicted RBP13.54□□□□□ -0.24
CCDC88C-212ENST00000556767 SIAH1Q8IUQ4 282 aa13.54□□□□□ -0.24
CCDC88C-212ENST00000556767 SPICE1Q8N0Z3 855 aa13.54□□□□□ -0.24
CCDC88C-212ENST00000556767 ESR2Q92731 530 aa13.54□□□□□ -0.24
CCDC88C-212ENST00000556767 MAP4K1Q92918 833 aa13.54□□□□□ -0.24
CCDC88C-212ENST00000556767 CEP95Q96GE4 821 aa13.54□□□□□ -0.24
CCDC88C-212ENST00000556767 LSG1Q9H089 658 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-212ENST00000556767 CPA4Q9UI42 421 aa13.54□□□□□ -0.24
CCDC88C-212ENST00000556767 STX8Q9UNK0 236 aa13.54□□□□□ -0.24
CCDC88C-212ENST00000556767 SLC45A1Q9Y2W3 748 aa13.54□□□□□ -0.24
CCDC88C-212ENST00000556767 TMX2Q9Y320 296 aa13.54□□□□□ -0.24
CCDC88C-212ENST00000556767 LOC285556D6RIA3 1793 aa13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 LAMA4Q16363 1823 aa13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 NMT2O60551 498 aa13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 FKTNO75072 461 aa13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 ECM2O94769 699 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 TTLL1O95922 423 aa13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 VCAM1P19320 739 aa13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 TRDNQ13061 729 aa13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 LRRC47Q8N1G4 583 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 ZNF296Q8WUU4 475 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 C12orf42Q96LP6 360 aa13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 CFHR5Q9BXR6 569 aa13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 GOPCQ9HD26 462 aa13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 MTMR4Q9NYA4 1195 aa13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 NYAP2Q9P242 653 aa13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 NEDD4P46934 1319 aa13.53□□□□□ -0.24
CCDC88C-212ENST00000556767 IGKV6D-41A0A0C4DH26 115 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 B4E1Z4 1266 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 USP17L15C9J2P7 530 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 USP17L13C9JLJ4 530 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 USP17L11C9JVI0 530 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 USP17L18D6R9N7 530 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 USP17L22D6RA61 530 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 USP17L17D6RBQ6 530 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 USP17L19D6RCP7 530 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms