RNA–Protein interactions for RNA: ENST00000556433.5

ACTN1-220, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-220ENST00000556433 USP17L19D6RCP7 530 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 USP17L20D6RJB6 530 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 HMGCRP04035 888 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 CAPN2P17655 700 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 CYP2B6P20813 491 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 ERVK-9P63128 1117 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 ERVK-24P63145 666 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 GABPAQ06546 454 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 USP17L24Q0WX57 530 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 CCAR1Q8IX12 1150 aaKnown RBP27.32■■□□□ 1.96
ACTN1-220ENST00000556433 HAUS7Q99871 368 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 LRRCC1Q9C099 1032 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 KIAA1683Q9H0B3 1180 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 ARMT1Q9H993 441 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 DCP1AQ9NPI6 582 aaPredicted RBP27.32■■□□□ 1.96
ACTN1-220ENST00000556433 ADD2P35612 726 aa27.31■■□□□ 1.96
ACTN1-220ENST00000556433 EVX2Q03828 476 aa27.31■■□□□ 1.96
ACTN1-220ENST00000556433 SLFNL1Q499Z3 407 aa27.31■■□□□ 1.96
ACTN1-220ENST00000556433 NUDT12Q9BQG2 462 aa27.31■■□□□ 1.96
ACTN1-220ENST00000556433 DDX24Q9GZR7 859 aaKnown RBP eCLIP27.31■■□□□ 1.965e-6■■■■■ 34.6
ACTN1-220ENST00000556433 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.31■■□□□ 1.966e-7■■□□□ 11.8
ACTN1-220ENST00000556433 SMARCA5O60264 1052 aaPredicted RBP27.3■■□□□ 1.96
ACTN1-220ENST00000556433 MAPK4P31152 587 aa27.3■■□□□ 1.96
ACTN1-220ENST00000556433 GUCY1A2P33402 732 aa27.3■■□□□ 1.96
ACTN1-220ENST00000556433 SEPT2Q15019 361 aa27.3■■□□□ 1.96
ACTN1-220ENST00000556433 POTEEQ6S8J3 1075 aa27.3■■□□□ 1.96
ACTN1-220ENST00000556433 COLQQ9Y215 455 aaPredicted RBP27.3■■□□□ 1.96
ACTN1-220ENST00000556433 MPHOSPH10O00566 681 aaKnown RBP27.29■■□□□ 1.96
ACTN1-220ENST00000556433 PRKAB2O43741 272 aa27.29■■□□□ 1.96
ACTN1-220ENST00000556433 CYP2D6P10635 497 aa27.29■■□□□ 1.96
ACTN1-220ENST00000556433 TRIM32Q13049 653 aa27.29■■□□□ 1.96
ACTN1-220ENST00000556433 CATSPERGQ6ZRH7 1159 aa27.29■■□□□ 1.96
ACTN1-220ENST00000556433 CRISPLD2Q9H0B8 497 aa27.29■■□□□ 1.96
ACTN1-220ENST00000556433 MBD4O95243 580 aa27.28■■□□□ 1.96
ACTN1-220ENST00000556433 SOCS4Q8WXH5 440 aa27.28■■□□□ 1.96
ACTN1-220ENST00000556433 PORCNQ9H237 461 aa27.28■■□□□ 1.96
ACTN1-220ENST00000556433 HMX1Q9NP08 348 aaPredicted RBP27.28■■□□□ 1.96
ACTN1-220ENST00000556433 RABGAP1Q9Y3P9 1069 aa27.28■■□□□ 1.96
ACTN1-220ENST00000556433 CEP290O15078 2479 aa27.27■■□□□ 1.96
ACTN1-220ENST00000556433 RPTORQ8N122 1335 aa27.27■■□□□ 1.96
ACTN1-220ENST00000556433 VCAM1P19320 739 aa27.27■■□□□ 1.96
ACTN1-220ENST00000556433 TRIB2Q92519 343 aa27.27■■□□□ 1.96
ACTN1-220ENST00000556433 XRCC5P13010 732 aaKnown RBP27.26■■□□□ 1.95
ACTN1-220ENST00000556433 UBE3CQ15386 1083 aa27.26■■□□□ 1.95
ACTN1-220ENST00000556433 GPR142Q7Z601 462 aa27.26■■□□□ 1.95
ACTN1-220ENST00000556433 PLEKHH3Q7Z736 793 aa27.26■■□□□ 1.95
ACTN1-220ENST00000556433 SLC44A5Q8NCS7 719 aa27.26■■□□□ 1.95
ACTN1-220ENST00000556433 CWC22Q9HCG8 908 aaKnown RBP27.26■■□□□ 1.95
ACTN1-220ENST00000556433 ATP8A2Q9NTI2 1148 aa27.26■■□□□ 1.95
ACTN1-220ENST00000556433 SWAP70Q9UH65 585 aa27.26■■□□□ 1.95
ACTN1-220ENST00000556433 CNMDO75829 334 aa27.25■■□□□ 1.95
ACTN1-220ENST00000556433 CHGBP05060 677 aa27.25■■□□□ 1.95
ACTN1-220ENST00000556433 DYNLL2Q96FJ2 89 aa27.25■■□□□ 1.95
ACTN1-220ENST00000556433 RPAP3Q9H6T3 665 aaPredicted RBP27.25■■□□□ 1.95
ACTN1-220ENST00000556433 NR2E3Q9Y5X4 410 aa27.25■■□□□ 1.95
ACTN1-220ENST00000556433 CCNA1P78396 465 aa27.24■■□□□ 1.95
ACTN1-220ENST00000556433 ZSCAN25Q6NSZ9 544 aa27.24■■□□□ 1.95
ACTN1-220ENST00000556433 USP6NLQ92738 828 aa27.24■■□□□ 1.95
ACTN1-220ENST00000556433 PAWRQ96IZ0 340 aaKnown RBP27.24■■□□□ 1.95
ACTN1-220ENST00000556433 A0A1W2PRG0 241 aa27.23■■□□□ 1.95
ACTN1-220ENST00000556433 RGS2P41220 211 aa27.23■■□□□ 1.95
ACTN1-220ENST00000556433 MORN1Q5T089 497 aa27.23■■□□□ 1.95
ACTN1-220ENST00000556433 TMEM179Q6ZVK1 233 aa27.23■■□□□ 1.95
ACTN1-220ENST00000556433 TRMT44Q8IYL2 757 aaKnown RBP27.23■■□□□ 1.95
ACTN1-220ENST00000556433 ECHDC1Q9NTX5 307 aa27.23■■□□□ 1.95
ACTN1-220ENST00000556433 NAV1Q8NEY1 1877 aa27.23■■□□□ 1.95
ACTN1-220ENST00000556433 DDX60LQ5H9U9 1706 aaKnown RBP27.22■■□□□ 1.95
ACTN1-220ENST00000556433 CHRDL2Q6WN34 429 aa27.22■■□□□ 1.95
ACTN1-220ENST00000556433 AMOTL1Q8IY63 956 aa27.22■■□□□ 1.95
ACTN1-220ENST00000556433 DDRGK1Q96HY6 314 aa27.22■■□□□ 1.95
ACTN1-220ENST00000556433 DCTPP1Q9H773 170 aa27.22■■□□□ 1.95
ACTN1-220ENST00000556433 SLC4A4Q9Y6R1 1079 aa27.22■■□□□ 1.95
ACTN1-220ENST00000556433 PLXNB2O15031 1838 aa27.21■■□□□ 1.95
ACTN1-220ENST00000556433 USP17L12C9JPN9 530 aa27.21■■□□□ 1.95
ACTN1-220ENST00000556433 USP17L21D6R901 530 aa27.21■■□□□ 1.95
ACTN1-220ENST00000556433 GLRX3O76003 335 aaKnown RBP27.21■■□□□ 1.95
ACTN1-220ENST00000556433 PRKAR2AP13861 404 aaKnown RBP27.21■■□□□ 1.95
ACTN1-220ENST00000556433 ZKSCAN1P17029 563 aaPredicted RBP27.21■■□□□ 1.95
ACTN1-220ENST00000556433 MAP3K21Q5TCX8 1036 aa27.21■■□□□ 1.95
ACTN1-220ENST00000556433 C12orf60Q5U649 245 aa27.21■■□□□ 1.95
ACTN1-220ENST00000556433 WDR78Q5VTH9 848 aa27.21■■□□□ 1.95
ACTN1-220ENST00000556433 LBX2Q6XYB7 198 aa27.21■■□□□ 1.95
ACTN1-220ENST00000556433 NECAB2Q7Z6G3 386 aa27.21■■□□□ 1.95
ACTN1-220ENST00000556433 BTBD7Q9P203 1132 aa27.21■■□□□ 1.95
ACTN1-220ENST00000556433 CYP2D7A0A087X1C5 515 aa27.2■■□□□ 1.94
ACTN1-220ENST00000556433 SPDYE16A6NNV3 312 aaPredicted RBP27.2■■□□□ 1.94
ACTN1-220ENST00000556433 EVI5O60447 810 aa27.2■■□□□ 1.94
ACTN1-220ENST00000556433 AKR1B1P15121 316 aa27.2■■□□□ 1.94
ACTN1-220ENST00000556433 ANKLE1Q8NAG6 615 aa27.2■■□□□ 1.94
ACTN1-220ENST00000556433 DIS3LQ8TF46 1054 aaKnown RBP27.2■■□□□ 1.94
ACTN1-220ENST00000556433 PUS7LQ9H0K6 701 aaKnown RBP27.2■■□□□ 1.94
ACTN1-220ENST00000556433 SMIM22K7EJ46 135 aa27.19■■□□□ 1.94
ACTN1-220ENST00000556433 CDK8P49336 464 aa27.19■■□□□ 1.94
ACTN1-220ENST00000556433 MAP2K5Q13163 448 aa27.19■■□□□ 1.94
ACTN1-220ENST00000556433 COG2Q14746 738 aa27.19■■□□□ 1.94
ACTN1-220ENST00000556433 CCL14Q16627 93 aa27.19■■□□□ 1.94
ACTN1-220ENST00000556433 HOXC10Q9NYD6 342 aa27.19■■□□□ 1.94
ACTN1-220ENST00000556433 FXR1P51114 621 aaKnown RBP eCLIP27.18■■□□□ 1.94
ACTN1-220ENST00000556433 CACNB2Q08289 660 aaPredicted RBP27.18■■□□□ 1.94
ACTN1-220ENST00000556433 CCDC17Q96LX7 622 aa27.18■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms