RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 CEP89Q96ST8 783 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 DACT1Q9NYF0 836 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 PAXBP1Q9Y5B6 917 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 SPATA31A6Q5VVP1 1343 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 IRS2Q9Y4H2 1338 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 BDNFP23560 247 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 CDC27P30260 824 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 TM4SF1P30408 202 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 CTDSPL2Q05D32 466 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 ZSCAN26Q16670 478 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 OTUD7BQ6GQQ9 843 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 APOA5Q6Q788 366 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 ANKRD18AQ8IVF6 992 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 UHMK1Q8TAS1 419 aaKnown RBP5.81□□□□□ -1.48
TMEM260-210ENST00000556422 LY9Q9HBG7 655 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 FAM217BQ9NTX9 383 aaPredicted RBP5.81□□□□□ -1.48
TMEM260-210ENST00000556422 RABL2AQ9UBK7 228 aaPredicted RBP5.81□□□□□ -1.48
TMEM260-210ENST00000556422 G3BP2Q9UN86 482 aaKnown RBP5.81□□□□□ -1.48
TMEM260-210ENST00000556422 GNPATO15228 680 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 AP5Z1O43299 807 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 RXRAP19793 462 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 NTRK3Q16288 839 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 SGMS1Q86VZ5 419 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 CCDC24Q8N4L8 307 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 RSPH1Q8WYR4 309 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 FAM84BQ96KN1 310 aaPredicted RBP5.81□□□□□ -1.48
TMEM260-210ENST00000556422 RIOK1Q9BRS2 568 aaKnown RBP5.81□□□□□ -1.48
TMEM260-210ENST00000556422 RSPH9Q9H1X1 276 aaPredicted RBP5.81□□□□□ -1.48
TMEM260-210ENST00000556422 ZSWIM5Q9P217 1185 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 ZNF232Q9UNY5 417 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 NID2Q14112 1375 aa5.81□□□□□ -1.48
TMEM260-210ENST00000556422 KIF28PB7ZC32 967 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 UBE2Q2LH0YL09 131 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 UBE4AQ14139 1066 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 CAMK4Q16566 473 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 NFXL1Q6ZNB6 911 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 C11orf96Q7Z7L8 435 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 TRIM74Q86UV6 250 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 TRIM73Q86UV7 250 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 MIGA1Q8NAN2 632 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 ANKRD20A12PQ8NF67 263 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 FBXO18Q8NFZ0 1043 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 AIFM3Q96NN9 605 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 GOLPH3LQ9H4A5 285 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 CCNL1Q9UK58 526 aaPredicted RBP5.8□□□□□ -1.48
TMEM260-210ENST00000556422 RCOR1Q9UKL0 485 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 RANBP6O60518 1105 aaKnown RBP5.8□□□□□ -1.48
TMEM260-210ENST00000556422 PARNO95453 639 aaKnown RBP5.8□□□□□ -1.48
TMEM260-210ENST00000556422 SH3BGRP55822 239 aaPredicted RBP5.8□□□□□ -1.48
TMEM260-210ENST00000556422 CEBPZQ03701 1054 aaKnown RBP5.8□□□□□ -1.48
TMEM260-210ENST00000556422 SNW1Q13573 536 aaKnown RBP5.8□□□□□ -1.48
TMEM260-210ENST00000556422 HS1BP3Q53T59 392 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 TRIM11Q96F44 468 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 IQCGQ9H095 443 aaKnown RBP5.8□□□□□ -1.48
TMEM260-210ENST00000556422 LRRC4BQ9NT99 713 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 LTBP1Q14766 1721 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 RBM47A0AV96 593 aaKnown RBP5.8□□□□□ -1.48
TMEM260-210ENST00000556422 ONECUT3O60422 494 aaPredicted RBP5.8□□□□□ -1.48
TMEM260-210ENST00000556422 AKNAD1Q5T1N1 836 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 ZSCAN30Q86W11 494 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 SDR42E1Q8WUS8 393 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 STAG1Q8WVM7 1258 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 TAF4BQ92750 862 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 GJD4Q96KN9 370 aaPredicted RBP5.8□□□□□ -1.48
TMEM260-210ENST00000556422 MYL10Q9BUA6 226 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 NAPBQ9H115 298 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 NUP62CLQ9H1M0 184 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 ABCF2Q9UG63 623 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 CFAP45Q9UL16 551 aa5.8□□□□□ -1.48
TMEM260-210ENST00000556422 TRDNQ13061 729 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 TTC19Q6DKK2 380 aaPredicted RBP5.79□□□□□ -1.48
TMEM260-210ENST00000556422 FBXO33Q7Z6M2 555 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 TXNRD3Q86VQ6 643 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 ENGASEQ8NFI3 743 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 TMEM87BQ96K49 555 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 CLSTN2Q9H4D0 955 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 GNL3LQ9NVN8 582 aaKnown RBP5.79□□□□□ -1.48
TMEM260-210ENST00000556422 MAP3K20Q9NYL2 800 aaKnown RBP5.79□□□□□ -1.48
TMEM260-210ENST00000556422 LRP2BPQ9P2M1 347 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 ORC3Q9UBD5 711 aaPredicted RBP5.79□□□□□ -1.48
TMEM260-210ENST00000556422 NOL7Q9UMY1 257 aaKnown RBP5.79□□□□□ -1.48
TMEM260-210ENST00000556422 ITM2BQ9Y287 266 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 SLC4A4Q9Y6R1 1079 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 UTRNP46939 3433 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 FAM200BP0CF97 657 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 LIFRP42702 1097 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 EVX2Q03828 476 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 WWC2Q6AWC2 1192 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 MICU3Q86XE3 530 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 CKAP2LQ8IYA6 745 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 SETDB2Q96T68 719 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 IRF2BPLQ9H1B7 796 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 ANKRD31Q8N7Z5 1873 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 BAZ2BQ9UIF8 2168 aaKnown RBP5.79□□□□□ -1.48
TMEM260-210ENST00000556422 LRRC37AA6NMS7 1700 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 DDX60LQ5H9U9 1706 aaKnown RBP5.79□□□□□ -1.48
TMEM260-210ENST00000556422 KCNA2P16389 499 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 METAP2P50579 478 aaKnown RBP eCLIP5.79□□□□□ -1.48
TMEM260-210ENST00000556422 APLP1P51693 650 aa5.79□□□□□ -1.48
TMEM260-210ENST00000556422 RPS8P62241 208 aaKnown RBP5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms