RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 GJD2Q9UKL4 321 aa13.22□□□□□ -0.29
SYNE2-221ENST00000556342 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.22□□□□□ -0.29
SYNE2-221ENST00000556342 USP17L5A8MUK1 530 aa13.21□□□□□ -0.29
SYNE2-221ENST00000556342 MTX1Q13505 466 aa13.21□□□□□ -0.29
SYNE2-221ENST00000556342 SH3D19Q5HYK7 790 aa13.21□□□□□ -0.29
SYNE2-221ENST00000556342 TBC1D9Q6ZT07 1266 aa13.21□□□□□ -0.29
SYNE2-221ENST00000556342 ANKLE1Q8NAG6 615 aa13.21□□□□□ -0.29
SYNE2-221ENST00000556342 SPATA5Q8NB90 893 aa13.21□□□□□ -0.29
SYNE2-221ENST00000556342 SLC17A8Q8NDX2 589 aa13.21□□□□□ -0.29
SYNE2-221ENST00000556342 LRCH3Q96II8 777 aa13.21□□□□□ -0.29
SYNE2-221ENST00000556342 NEUROD6Q96NK8 337 aa13.21□□□□□ -0.29
SYNE2-221ENST00000556342 GDF15Q99988 308 aa13.21□□□□□ -0.29
SYNE2-221ENST00000556342 HERC5Q9UII4 1024 aaKnown RBP13.21□□□□□ -0.29
SYNE2-221ENST00000556342 DOCK3Q8IZD9 2030 aa13.2□□□□□ -0.3
SYNE2-221ENST00000556342 LOC285556D6RIA3 1793 aa13.2□□□□□ -0.3
SYNE2-221ENST00000556342 RPTORQ8N122 1335 aa13.2□□□□□ -0.3
SYNE2-221ENST00000556342 GNAI3P08754 354 aa13.2□□□□□ -0.3
SYNE2-221ENST00000556342 ARID4AP29374 1257 aaPredicted RBP13.2□□□□□ -0.3
SYNE2-221ENST00000556342 TRIM32Q13049 653 aa13.2□□□□□ -0.3
SYNE2-221ENST00000556342 C7orf61Q8IZ16 206 aa13.2□□□□□ -0.3
SYNE2-221ENST00000556342 KCNV2Q8TDN2 545 aa13.2□□□□□ -0.3
SYNE2-221ENST00000556342 DDX12PQ92771 950 aa13.2□□□□□ -0.3
SYNE2-221ENST00000556342 AS3MTQ9HBK9 375 aa13.2□□□□□ -0.3
SYNE2-221ENST00000556342 HMX1Q9NP08 348 aaPredicted RBP13.2□□□□□ -0.3
SYNE2-221ENST00000556342 RAI14Q9P0K7 980 aa13.2□□□□□ -0.3
SYNE2-221ENST00000556342 MORF4L1Q9UBU8 362 aa13.2□□□□□ -0.3
SYNE2-221ENST00000556342 ZMYND8Q9ULU4 1186 aaPredicted RBP13.2□□□□□ -0.3
SYNE2-221ENST00000556342 BMP8BP34820 402 aa13.19□□□□□ -0.3
SYNE2-221ENST00000556342 GORABQ5T7V8 394 aa13.19□□□□□ -0.3
SYNE2-221ENST00000556342 TEX11Q8IYF3 940 aa13.19□□□□□ -0.3
SYNE2-221ENST00000556342 TRIB2Q92519 343 aa13.19□□□□□ -0.3
SYNE2-221ENST00000556342 WDR18Q9BV38 432 aa13.19□□□□□ -0.3
SYNE2-221ENST00000556342 NBPF3Q9H094 633 aa13.19□□□□□ -0.3
SYNE2-221ENST00000556342 HRO43593 1189 aa13.18□□□□□ -0.3
SYNE2-221ENST00000556342 MCAMP43121 646 aa13.18□□□□□ -0.3
SYNE2-221ENST00000556342 BACE1P56817 501 aa13.18□□□□□ -0.3
SYNE2-221ENST00000556342 IRX3P78415 501 aaPredicted RBP13.18□□□□□ -0.3
SYNE2-221ENST00000556342 MTMR2Q13614 643 aa13.18□□□□□ -0.3
SYNE2-221ENST00000556342 MAP3K21Q5TCX8 1036 aa13.18□□□□□ -0.3
SYNE2-221ENST00000556342 SH3RF3Q8TEJ3 882 aaPredicted RBP13.18□□□□□ -0.3
SYNE2-221ENST00000556342 RNF166Q96A37 237 aaPredicted RBP13.18□□□□□ -0.3
SYNE2-221ENST00000556342 DHX36Q9H2U1 1008 aaKnown RBP13.18□□□□□ -0.3
SYNE2-221ENST00000556342 C11orf49Q9H6J7 331 aa13.18□□□□□ -0.3
SYNE2-221ENST00000556342 LRP2BPQ9P2M1 347 aa13.18□□□□□ -0.3
SYNE2-221ENST00000556342 PI4KBQ9UBF8 816 aa13.18□□□□□ -0.3
SYNE2-221ENST00000556342 OGDHLQ9ULD0 1010 aa13.18□□□□□ -0.3
SYNE2-221ENST00000556342 ALPK3Q96L96 1907 aa13.17□□□□□ -0.3
SYNE2-221ENST00000556342 DLL1O00548 723 aa13.17□□□□□ -0.3
SYNE2-221ENST00000556342 ASNSP08243 561 aa13.17□□□□□ -0.3
SYNE2-221ENST00000556342 HOXA7P31268 230 aaPredicted RBP13.17□□□□□ -0.3
SYNE2-221ENST00000556342 RARSP54136 660 aaKnown RBP13.17□□□□□ -0.3
SYNE2-221ENST00000556342 SOCS4Q8WXH5 440 aa13.17□□□□□ -0.3
SYNE2-221ENST00000556342 ARHGAP45Q92619 1136 aa13.17□□□□□ -0.3
SYNE2-221ENST00000556342 NOL10Q9BSC4 688 aaKnown RBP13.17□□□□□ -0.3
SYNE2-221ENST00000556342 TMOD4Q9NZQ9 345 aa13.17□□□□□ -0.3
SYNE2-221ENST00000556342 PPP1R3GB7ZBB8 358 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 PEX10O60683 326 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 BAG3O95817 575 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 UQCRFS1P1P0C7P4 283 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 XRCC5P13010 732 aaKnown RBP13.16□□□□□ -0.3
SYNE2-221ENST00000556342 SYN1P17600 705 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 CYP2B6P20813 491 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 HERVK_113P62684 666 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 JAG1P78504 1218 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 GPRC5AQ8NFJ5 357 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 P2RX7Q99572 595 aaKnown RBP13.16□□□□□ -0.3
SYNE2-221ENST00000556342 NUDT12Q9BQG2 462 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 ZBED2Q9BTP6 218 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 DNAJC18Q9H819 358 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 TXNRD2Q9NNW7 524 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 AATFQ9NY61 560 aaKnown RBP eCLIP13.16□□□□□ -0.3
SYNE2-221ENST00000556342 VPS9D1Q9Y2B5 631 aa13.16□□□□□ -0.3
SYNE2-221ENST00000556342 CUL9Q8IWT3 2517 aa13.15□□□□□ -0.3
SYNE2-221ENST00000556342 PNMA6EA0A0J9YXQ4 647 aa13.15□□□□□ -0.3
SYNE2-221ENST00000556342 C19orf81C9J6K1 198 aa13.15□□□□□ -0.3
SYNE2-221ENST00000556342 MAGEA10P43363 369 aaPredicted RBP13.15□□□□□ -0.3
SYNE2-221ENST00000556342 G3BP1Q13283 466 aaKnown RBP eCLIP13.15□□□□□ -0.3
SYNE2-221ENST00000556342 NBR1Q14596 966 aa13.15□□□□□ -0.3
SYNE2-221ENST00000556342 SHROOM1Q2M3G4 852 aaPredicted RBP13.15□□□□□ -0.3
SYNE2-221ENST00000556342 LRIT3Q3SXY7 679 aa13.15□□□□□ -0.3
SYNE2-221ENST00000556342 NAA16Q6N069 864 aaPredicted RBP13.15□□□□□ -0.3
SYNE2-221ENST00000556342 METTL16Q86W50 562 aaKnown RBP13.15□□□□□ -0.3
SYNE2-221ENST00000556342 MAPKAPK5Q8IW41 473 aa13.15□□□□□ -0.3
SYNE2-221ENST00000556342 TGFBRAP1Q8WUH2 860 aa13.15□□□□□ -0.3
SYNE2-221ENST00000556342 PFASO15067 1338 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 FLT1P17948 1338 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 ATAD5Q96QE3 1844 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 USP17L10C9JJH3 530 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 GDF11O95390 407 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 GNAI2P04899 355 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 ZKSCAN1P17029 563 aaPredicted RBP13.14□□□□□ -0.31
SYNE2-221ENST00000556342 MAPK4P31152 587 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 PPP4CP60510 307 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 PDE3AQ14432 1141 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 C6orf132Q5T0Z8 1188 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 ADGRA1Q86SQ6 560 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 FOXP4Q8IVH2 680 aaPredicted RBP13.14□□□□□ -0.31
SYNE2-221ENST00000556342 TRMT44Q8IYL2 757 aaKnown RBP13.14□□□□□ -0.31
SYNE2-221ENST00000556342 TDHQ8IZJ6 230 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 CRACR2BQ8N4Y2 399 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms