RNA–Protein interactions for RNA: ENST00000555905.5

TMEM260-208, Transcript of transmembrane protein 260, humanhuman

TSL 5

Gene TMEM260, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-208ENST00000555905 TMEM179Q6ZVK1 233 aa12.94□□□□□ -0.34
TMEM260-208ENST00000555905 DGKHQ86XP1 1220 aa12.94□□□□□ -0.34
TMEM260-208ENST00000555905 ENAHQ8N8S7 591 aaPredicted RBP12.94□□□□□ -0.34
TMEM260-208ENST00000555905 LARP6Q9BRS8 491 aaKnown RBP12.94□□□□□ -0.34
TMEM260-208ENST00000555905 GPHNQ9NQX3 736 aaPredicted RBP12.94□□□□□ -0.34
TMEM260-208ENST00000555905 SH2B1Q9NRF2 756 aaPredicted RBP12.94□□□□□ -0.34
TMEM260-208ENST00000555905 NAP1L2Q9ULW6 460 aaPredicted RBP12.94□□□□□ -0.34
TMEM260-208ENST00000555905 KLF18A0A0U1RQI7 1052 aa12.93□□□□□ -0.34
TMEM260-208ENST00000555905 PPP1R12BO60237 982 aaPredicted RBP12.93□□□□□ -0.34
TMEM260-208ENST00000555905 GDF11O95390 407 aa12.93□□□□□ -0.34
TMEM260-208ENST00000555905 SEC23AQ15436 765 aa12.93□□□□□ -0.34
TMEM260-208ENST00000555905 MAP1SQ66K74 1059 aaPredicted RBP12.93□□□□□ -0.34
TMEM260-208ENST00000555905 SGMS1Q86VZ5 419 aa12.93□□□□□ -0.34
TMEM260-208ENST00000555905 CDCA5Q96FF9 252 aa12.93□□□□□ -0.34
TMEM260-208ENST00000555905 ZNF274Q96GC6 653 aaPredicted RBP12.93□□□□□ -0.34
TMEM260-208ENST00000555905 CEP95Q96GE4 821 aa12.93□□□□□ -0.34
TMEM260-208ENST00000555905 TMX3Q96JJ7 454 aa12.93□□□□□ -0.34
TMEM260-208ENST00000555905 GLIS2Q9BZE0 524 aaPredicted RBP12.93□□□□□ -0.34
TMEM260-208ENST00000555905 KANSL2Q9H9L4 492 aa12.93□□□□□ -0.34
TMEM260-208ENST00000555905 GPBP1L1Q9HC44 474 aaPredicted RBP12.93□□□□□ -0.34
TMEM260-208ENST00000555905 IL17RBQ9NRM6 502 aa12.93□□□□□ -0.34
TMEM260-208ENST00000555905 GINM1Q9NU53 330 aa12.93□□□□□ -0.34
TMEM260-208ENST00000555905 TPCN1Q9ULQ1 816 aa12.93□□□□□ -0.34
TMEM260-208ENST00000555905 STX8Q9UNK0 236 aa12.93□□□□□ -0.34
TMEM260-208ENST00000555905 SLC12A7Q9Y666 1083 aa12.93□□□□□ -0.34
TMEM260-208ENST00000555905 GREB1LQ9C091 1923 aaPredicted RBP12.93□□□□□ -0.34
TMEM260-208ENST00000555905 ATAD5Q96QE3 1844 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 IGKV6D-41A0A0C4DH26 115 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 PHF20L1A8MW92 1017 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 CTNND1O60716 968 aaKnown RBP12.92□□□□□ -0.34
TMEM260-208ENST00000555905 TTLL1O95922 423 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 GH2P01242 217 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 HSP90AA1P07900 732 aaKnown RBP12.92□□□□□ -0.34
TMEM260-208ENST00000555905 ASNSP08243 561 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 POTEIP0CG38 1075 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 POTEJP0CG39 1038 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 CAP2P40123 477 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 EVCP57679 992 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 RAB3GAP1Q15042 981 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 CATIPQ7Z7H3 387 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 ANKS1AQ92625 1134 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 CHMP4CQ96CF2 233 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 IPO9Q96P70 1041 aaKnown RBP12.92□□□□□ -0.34
TMEM260-208ENST00000555905 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.92□□□□□ -0.34
TMEM260-208ENST00000555905 SLKQ9H2G2 1235 aaPredicted RBP12.92□□□□□ -0.34
TMEM260-208ENST00000555905 KAT14Q9H8E8 782 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 MTMR4Q9NYA4 1195 aa12.92□□□□□ -0.34
TMEM260-208ENST00000555905 SSC5DA1L4H1 1573 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 GOLGA8BA8MQT2 603 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 ZBTB43O43298 467 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 TOP1P11387 765 aaKnown RBP12.91□□□□□ -0.34
TMEM260-208ENST00000555905 IREB2P48200 963 aaKnown RBP12.91□□□□□ -0.34
TMEM260-208ENST00000555905 ICA1Q05084 483 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 STK3Q13188 491 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 RRP1BQ14684 758 aaKnown RBP12.91□□□□□ -0.34
TMEM260-208ENST00000555905 SEPT2Q15019 361 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 ME3Q16798 604 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 RCSD1Q6JBY9 416 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 APOA5Q6Q788 366 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 ZNF654Q8IZM8 581 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 WRNIP1Q96S55 665 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 SENP2Q9HC62 589 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 ZNF112Q9UJU3 913 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 BRPF3Q9ULD4 1205 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 ZBTB21Q9ULJ3 1066 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 FARP1Q9Y4F1 1045 aaPredicted RBP12.91□□□□□ -0.34
TMEM260-208ENST00000555905 MYH4Q9Y623 1939 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 DOCK1Q14185 1865 aa12.91□□□□□ -0.34
TMEM260-208ENST00000555905 PFKFB2O60825 505 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 DDAH1O94760 285 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 CALM1P0DP23 149 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 CALM2P0DP24 149 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 CALM3P0DP25 149 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 PDIA3P30101 505 aaKnown RBP12.9□□□□□ -0.34
TMEM260-208ENST00000555905 NOVP48745 357 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 RCAN1P53805 252 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 ATP2B2Q01814 1243 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 PRKG1Q13976 671 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 TTLL12Q14166 644 aaPredicted RBP12.9□□□□□ -0.34
TMEM260-208ENST00000555905 DLK2Q6UY11 383 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 TMEM47Q9BQJ4 181 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 PICK1Q9NRD5 415 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 NYAP2Q9P242 653 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 CLIP2Q9UDT6 1046 aa12.9□□□□□ -0.34
TMEM260-208ENST00000555905 GOLGA8AA7E2F4 631 aa12.89□□□□□ -0.35
TMEM260-208ENST00000555905 DHX16O60231 1041 aaKnown RBP12.89□□□□□ -0.35
TMEM260-208ENST00000555905 USP2O75604 605 aaPredicted RBP12.89□□□□□ -0.35
TMEM260-208ENST00000555905 LARGE1O95461 756 aa12.89□□□□□ -0.35
TMEM260-208ENST00000555905 EEF2P13639 858 aaKnown RBP12.89□□□□□ -0.35
TMEM260-208ENST00000555905 GUCY1A2P33402 732 aa12.89□□□□□ -0.35
TMEM260-208ENST00000555905 METAP2P50579 478 aaKnown RBP eCLIP12.89□□□□□ -0.35
TMEM260-208ENST00000555905 JAG1P78504 1218 aa12.89□□□□□ -0.35
TMEM260-208ENST00000555905 SHROOM1Q2M3G4 852 aaPredicted RBP12.89□□□□□ -0.35
TMEM260-208ENST00000555905 ARMC9Q7Z3E5 817 aa12.89□□□□□ -0.35
TMEM260-208ENST00000555905 MICU3Q86XE3 530 aa12.89□□□□□ -0.35
TMEM260-208ENST00000555905 SCYL3Q8IZE3 742 aa12.89□□□□□ -0.35
TMEM260-208ENST00000555905 NECAB1Q8N987 351 aa12.89□□□□□ -0.35
TMEM260-208ENST00000555905 PNMA1Q8ND90 353 aa12.89□□□□□ -0.35
TMEM260-208ENST00000555905 NUP133Q8WUM0 1156 aa12.89□□□□□ -0.35
TMEM260-208ENST00000555905 KLRG1Q96E93 195 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms