RNA–Protein interactions for RNA: ENST00000555386.5

PSEN1-213, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,484 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-213ENST00000555386 PTPRFP10586 1907 aa11.65□□□□□ -0.55
PSEN1-213ENST00000555386 CCL15-CCL14A0A0B4J2E2 113 aa11.64□□□□□ -0.55
PSEN1-213ENST00000555386 USP17L5A8MUK1 530 aa11.64□□□□□ -0.55
PSEN1-213ENST00000555386 K7ELQ4 463 aaPredicted RBP11.64□□□□□ -0.55
PSEN1-213ENST00000555386 RANBP6O60518 1105 aaKnown RBP11.64□□□□□ -0.55
PSEN1-213ENST00000555386 ZBTB48P10074 688 aaPredicted RBP11.64□□□□□ -0.55
PSEN1-213ENST00000555386 RASA1P20936 1047 aa11.64□□□□□ -0.55
PSEN1-213ENST00000555386 PPATQ06203 517 aa11.64□□□□□ -0.55
PSEN1-213ENST00000555386 PPIL2Q13356 520 aa11.64□□□□□ -0.55
PSEN1-213ENST00000555386 CCL15Q16663 113 aa11.64□□□□□ -0.55
PSEN1-213ENST00000555386 IMMTQ16891 758 aaKnown RBP11.64□□□□□ -0.55
PSEN1-213ENST00000555386 TBC1D10CQ8IV04 446 aa11.64□□□□□ -0.55
PSEN1-213ENST00000555386 IL27Q8NEV9 243 aa11.64□□□□□ -0.55
PSEN1-213ENST00000555386 CHMP4CQ96CF2 233 aa11.64□□□□□ -0.55
PSEN1-213ENST00000555386 USP26Q9BXU7 913 aa11.64□□□□□ -0.55
PSEN1-213ENST00000555386 CTNNA3Q9UI47 895 aa11.64□□□□□ -0.55
PSEN1-213ENST00000555386 RBM8AQ9Y5S9 174 aaKnown RBP11.64□□□□□ -0.55
PSEN1-213ENST00000555386 TACC3Q9Y6A5 838 aa11.64□□□□□ -0.55
PSEN1-213ENST00000555386 MYH4Q9Y623 1939 aa11.64□□□□□ -0.55
PSEN1-213ENST00000555386 UNCXA6NJT0 531 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 TSPY3P0CV98 308 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 TSPY8P0CW00 308 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 PTMSP20962 102 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 MCM4P33991 863 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 TFAP4Q01664 338 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 SNAPC2Q13487 334 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 MFSD6Q6ZSS7 791 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 ZNF280CQ8ND82 737 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 FEZ1Q99689 392 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 LSG1Q9H089 658 aaKnown RBP11.63□□□□□ -0.55
PSEN1-213ENST00000555386 NBPF3Q9H094 633 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 ZNF287Q9HBT7 754 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 TSKSQ9UJT2 592 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 AFG3L2Q9Y4W6 797 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 ROBO3Q96MS0 1386 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 TSPY2A6NKD2 308 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 DDX11L8A8MPP1 907 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 EPB41L2O43491 1005 aaKnown RBP11.63□□□□□ -0.55
PSEN1-213ENST00000555386 GUCY1A2P33402 732 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 MAP2K2P36507 400 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 GTF2A2P52657 109 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 HMGCS2P54868 508 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 MTMR2Q13614 643 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 AKNAD1Q5T1N1 836 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 TMEM179Q6ZVK1 233 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 ACER1Q8TDN7 264 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 BRI3BPQ8WY22 251 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 AS3MTQ9HBK9 375 aa11.63□□□□□ -0.55
PSEN1-213ENST00000555386 ZMYM6O95789 1325 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 NEDD4P46934 1319 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 MANSC4A6NHS7 340 aaPredicted RBP11.62□□□□□ -0.55
PSEN1-213ENST00000555386 NMT2O60551 498 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 TRPA1O75762 1119 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 CETPP11597 493 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 ICA1Q05084 483 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 SREBF2Q12772 1141 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 MAP4K1Q92918 833 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 MS4A4AQ96JQ5 239 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 CCDC17Q96LX7 622 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 BEGAINQ9BUH8 593 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 ANAPC4Q9UJX5 808 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 MTMR7Q9Y216 660 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 TAF6LQ9Y6J9 622 aa11.62□□□□□ -0.55
PSEN1-213ENST00000555386 B4E1Z4 1266 aa11.61□□□□□ -0.55
PSEN1-213ENST00000555386 USP17L10C9JJH3 530 aa11.61□□□□□ -0.55
PSEN1-213ENST00000555386 IGF2BP3O00425 579 aaKnown RBP eCLIP11.61□□□□□ -0.55
PSEN1-213ENST00000555386 CYP21A2P08686 494 aa11.61□□□□□ -0.55
PSEN1-213ENST00000555386 NKX2-3Q8TAU0 364 aa11.61□□□□□ -0.55
PSEN1-213ENST00000555386 STAG1Q8WVM7 1258 aa11.61□□□□□ -0.55
PSEN1-213ENST00000555386 PTPN18Q99952 460 aa11.61□□□□□ -0.55
PSEN1-213ENST00000555386 ZKSCAN3Q9BRR0 538 aa11.61□□□□□ -0.55
PSEN1-213ENST00000555386 RNF41Q9H4P4 317 aaPredicted RBP11.61□□□□□ -0.55
PSEN1-213ENST00000555386 ISY1Q9ULR0 285 aaKnown RBP11.61□□□□□ -0.55
PSEN1-213ENST00000555386 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.61□□□□□ -0.55
PSEN1-213ENST00000555386 BTBD19C9JJ37 291 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 CXCL11O14625 94 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 KDM4AO75164 1064 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 EEF2P13639 858 aaKnown RBP11.6□□□□□ -0.55
PSEN1-213ENST00000555386 DSG3P32926 999 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 BACE1P56817 501 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 MAP2K1Q02750 393 aaPredicted RBP11.6□□□□□ -0.55
PSEN1-213ENST00000555386 CREB3L3Q68CJ9 461 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 IFNL1Q8IU54 200 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 SPICE1Q8N0Z3 855 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 LRRC47Q8N1G4 583 aaKnown RBP11.6□□□□□ -0.55
PSEN1-213ENST00000555386 FAM43AQ8N2R8 423 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 SPRYD3Q8NCJ5 442 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 CEP95Q96GE4 821 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.6□□□□□ -0.55
PSEN1-213ENST00000555386 ARHGEF10LQ9HCE6 1279 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 TMOD4Q9NZQ9 345 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 CLIP2Q9UDT6 1046 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 KCNH4Q9UQ05 1017 aa11.6□□□□□ -0.55
PSEN1-213ENST00000555386 A0A0G2JLL6 359 aaPredicted RBP11.59□□□□□ -0.55
PSEN1-213ENST00000555386 A0A1W2PRG0 241 aa11.59□□□□□ -0.55
PSEN1-213ENST00000555386 SLC27A2O14975 620 aa11.59□□□□□ -0.55
PSEN1-213ENST00000555386 ST18O60284 1047 aa11.59□□□□□ -0.55
PSEN1-213ENST00000555386 TBC1D8O95759 1140 aa11.59□□□□□ -0.55
PSEN1-213ENST00000555386 HSP90AA1P07900 732 aaKnown RBP11.59□□□□□ -0.55
PSEN1-213ENST00000555386 HSPA1AP0DMV8 641 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms