RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 USP6NLQ92738 828 aa13.85□□□□□ -0.19
VPS33B-204ENST00000554660 FRAT1Q92837 279 aaPredicted RBP13.85□□□□□ -0.19
VPS33B-204ENST00000554660 TRIM34Q9BYJ4 488 aa13.85□□□□□ -0.19
VPS33B-204ENST00000554660 DHX36Q9H2U1 1008 aaKnown RBP13.85□□□□□ -0.19
VPS33B-204ENST00000554660 NDUFB9Q9Y6M9 179 aa13.85□□□□□ -0.19
VPS33B-204ENST00000554660 DNAH12Q6ZR08 3092 aa13.85□□□□□ -0.19
VPS33B-204ENST00000554660 C19orf81C9J6K1 198 aa13.84□□□□□ -0.19
VPS33B-204ENST00000554660 BAG3O95817 575 aa13.84□□□□□ -0.19
VPS33B-204ENST00000554660 RLBP1P12271 317 aa13.84□□□□□ -0.19
VPS33B-204ENST00000554660 MORN1Q5T089 497 aa13.84□□□□□ -0.19
VPS33B-204ENST00000554660 ATF7IPQ6VMQ6 1270 aa13.84□□□□□ -0.19
VPS33B-204ENST00000554660 PLEKHH3Q7Z736 793 aa13.84□□□□□ -0.19
VPS33B-204ENST00000554660 SKAP1Q86WV1 359 aa13.84□□□□□ -0.19
VPS33B-204ENST00000554660 FTSJ3Q8IY81 847 aaKnown RBP13.84□□□□□ -0.19
VPS33B-204ENST00000554660 CWC22Q9HCG8 908 aaKnown RBP13.84□□□□□ -0.19
VPS33B-204ENST00000554660 EMILIN3Q9NT22 766 aa13.84□□□□□ -0.19
VPS33B-204ENST00000554660 TNNQ9UQP3 1299 aa13.84□□□□□ -0.19
VPS33B-204ENST00000554660 PCDHB15Q9Y5E8 787 aa13.84□□□□□ -0.19
VPS33B-204ENST00000554660 UQCRFS1P1P0C7P4 283 aa13.83□□□□□ -0.2
VPS33B-204ENST00000554660 NFKBIBQ15653 356 aa13.83□□□□□ -0.2
VPS33B-204ENST00000554660 TTC39AQ5SRH9 613 aa13.83□□□□□ -0.2
VPS33B-204ENST00000554660 METTL16Q86W50 562 aaKnown RBP13.83□□□□□ -0.2
VPS33B-204ENST00000554660 TRMT44Q8IYL2 757 aaKnown RBP13.83□□□□□ -0.2
VPS33B-204ENST00000554660 ARHGAP45Q92619 1136 aa13.83□□□□□ -0.2
VPS33B-204ENST00000554660 FAM161BQ96MY7 647 aa13.83□□□□□ -0.2
VPS33B-204ENST00000554660 FLRT1Q9NZU1 646 aa13.83□□□□□ -0.2
VPS33B-204ENST00000554660 MYO5AQ9Y4I1 1855 aaKnown RBP13.82□□□□□ -0.2
VPS33B-204ENST00000554660 CNMDO75829 334 aa13.82□□□□□ -0.2
VPS33B-204ENST00000554660 GH2P01242 217 aa13.82□□□□□ -0.2
VPS33B-204ENST00000554660 PLCG2P16885 1265 aa13.82□□□□□ -0.2
VPS33B-204ENST00000554660 DYNLL1P63167 89 aaKnown RBP13.82□□□□□ -0.2
VPS33B-204ENST00000554660 MAP2K5Q13163 448 aa13.82□□□□□ -0.2
VPS33B-204ENST00000554660 G3BP1Q13283 466 aaKnown RBP eCLIP13.82□□□□□ -0.2
VPS33B-204ENST00000554660 WDR78Q5VTH9 848 aa13.82□□□□□ -0.2
VPS33B-204ENST00000554660 SMC5Q8IY18 1101 aa13.82□□□□□ -0.2
VPS33B-204ENST00000554660 GTF3C2Q8WUA4 911 aaPredicted RBP13.82□□□□□ -0.2
VPS33B-204ENST00000554660 GUCD1Q96NT3 240 aa13.82□□□□□ -0.2
VPS33B-204ENST00000554660 FEZ1Q99689 392 aa13.82□□□□□ -0.2
VPS33B-204ENST00000554660 DBNDD2Q9BQY9 259 aa13.82□□□□□ -0.2
VPS33B-204ENST00000554660 COL25A1Q9BXS0 654 aaPredicted RBP13.82□□□□□ -0.2
VPS33B-204ENST00000554660 LTBP2Q14767 1821 aa13.81□□□□□ -0.2
VPS33B-204ENST00000554660 VCANP13611 3396 aa13.81□□□□□ -0.2
VPS33B-204ENST00000554660 EIF5BO60841 1220 aaKnown RBP13.81□□□□□ -0.2
VPS33B-204ENST00000554660 GNAI2P04899 355 aa13.81□□□□□ -0.2
VPS33B-204ENST00000554660 CYP2E1P05181 493 aaPredicted RBP13.81□□□□□ -0.2
VPS33B-204ENST00000554660 HLA-DOAP06340 250 aa13.81□□□□□ -0.2
VPS33B-204ENST00000554660 ATN1P54259 1190 aaPredicted RBP13.81□□□□□ -0.2
VPS33B-204ENST00000554660 PPP4CP60510 307 aa13.81□□□□□ -0.2
VPS33B-204ENST00000554660 TNNI3KQ59H18 835 aa13.81□□□□□ -0.2
VPS33B-204ENST00000554660 USP17L2Q6R6M4 530 aa13.81□□□□□ -0.2
VPS33B-204ENST00000554660 FOXP4Q8IVH2 680 aaPredicted RBP13.81□□□□□ -0.2
VPS33B-204ENST00000554660 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.81□□□□□ -0.2
VPS33B-204ENST00000554660 TBC1D32Q96NH3 1257 aa13.81□□□□□ -0.2
VPS33B-204ENST00000554660 SENP6Q9GZR1 1112 aaPredicted RBP13.81□□□□□ -0.2
VPS33B-204ENST00000554660 PIH1D3Q9NQM4 214 aaKnown RBP13.81□□□□□ -0.2
VPS33B-204ENST00000554660 FPGT-TNNI3KV9GXZ4 949 aa13.81□□□□□ -0.2
VPS33B-204ENST00000554660 TRIM27P14373 513 aa13.8□□□□□ -0.2
VPS33B-204ENST00000554660 ZAP70P43403 619 aa13.8□□□□□ -0.2
VPS33B-204ENST00000554660 C12orf42Q96LP6 360 aa13.8□□□□□ -0.2
VPS33B-204ENST00000554660 GINM1Q9NU53 330 aa13.8□□□□□ -0.2
VPS33B-204ENST00000554660 DDX20Q9UHI6 824 aaKnown RBP13.8□□□□□ -0.2
VPS33B-204ENST00000554660 VCAM1P19320 739 aa13.79□□□□□ -0.2
VPS33B-204ENST00000554660 CNGA1P29973 690 aa13.79□□□□□ -0.2
VPS33B-204ENST00000554660 CYP2C19P33261 490 aa13.79□□□□□ -0.2
VPS33B-204ENST00000554660 GSE1Q14687 1217 aa13.79□□□□□ -0.2
VPS33B-204ENST00000554660 CCDC158Q5M9N0 1113 aa13.79□□□□□ -0.2
VPS33B-204ENST00000554660 MFSD14CQ5VZR4 134 aa13.79□□□□□ -0.2
VPS33B-204ENST00000554660 MIGA1Q8NAN2 632 aa13.79□□□□□ -0.2
VPS33B-204ENST00000554660 EDC3Q96F86 508 aaKnown RBP13.79□□□□□ -0.2
VPS33B-204ENST00000554660 LBHD1Q9BQE6 289 aaPredicted RBP13.79□□□□□ -0.2
VPS33B-204ENST00000554660 TLR7Q9NYK1 1049 aaKnown RBP13.79□□□□□ -0.2
VPS33B-204ENST00000554660 RABGAP1Q9Y3P9 1069 aa13.79□□□□□ -0.2
VPS33B-204ENST00000554660 MYH1P12882 1939 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 CDH23Q9H251 3354 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 USP17L15C9J2P7 530 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 USP17L13C9JLJ4 530 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 USP17L11C9JVI0 530 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 USP17L18D6R9N7 530 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 USP17L22D6RA61 530 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 USP17L17D6RBQ6 530 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 USP17L19D6RCP7 530 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 USP17L20D6RJB6 530 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 POTEB2H3BUK9 544 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 CYP7A1P22680 504 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 PTPREP23469 700 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 CCNA1P78396 465 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 USP17L24Q0WX57 530 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 OS9Q13438 667 aaPredicted RBP13.78□□□□□ -0.2
VPS33B-204ENST00000554660 GRB14Q14449 540 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 RAB3GAP1Q15042 981 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 TRPV1Q8NER1 839 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 NPLOC4Q8TAT6 608 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 ACER1Q8TDN7 264 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 BTBD7Q9P203 1132 aa13.78□□□□□ -0.2
VPS33B-204ENST00000554660 SLC15A5A6NIM6 579 aa13.77□□□□□ -0.21
VPS33B-204ENST00000554660 DNM1LO00429 736 aa13.77□□□□□ -0.21
VPS33B-204ENST00000554660 IDH1O75874 414 aaKnown RBP13.77□□□□□ -0.21
VPS33B-204ENST00000554660 GLRX3O76003 335 aaKnown RBP13.77□□□□□ -0.21
VPS33B-204ENST00000554660 USP5P45974 858 aa13.77□□□□□ -0.21
VPS33B-204ENST00000554660 RTP1P59025 263 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms