RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 C15orf52Q6ZUT6 534 aaKnown RBP7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 NBPF5PQ86XG9 351 aaPredicted RBP7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 SEPT12Q8IYM1 358 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 IFNL3Q8IZI9 196 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 FOXD4L4Q8WXT5 416 aaPredicted RBP7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 AIDAQ96BJ3 306 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 CHAMP1Q96JM3 812 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 TMEM87BQ96K49 555 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 FAM84BQ96KN1 310 aaPredicted RBP7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 COL25A1Q9BXS0 654 aaPredicted RBP7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 QTRT2Q9H974 415 aaKnown RBP7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 FAM217BQ9NTX9 383 aaPredicted RBP7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 CNPY2Q9Y2B0 182 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 DLEC1Q9Y238 1755 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 IRS2Q9Y4H2 1338 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 SNAP23O00161 211 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 IRF6O14896 467 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 PRC1O43663 620 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 GADD45BO75293 160 aaPredicted RBP7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 UPP2O95045 317 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 RFC4P35249 363 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 KCNQ4P56696 695 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 ANTXR2P58335 489 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 FOXK2Q01167 660 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 TRDNQ13061 729 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 RESTQ13127 1097 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 STK3Q13188 491 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 NR5A1Q13285 461 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 UVSSAQ2YD98 709 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 MEX3CQ5U5Q3 659 aaKnown RBP7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 GIMAP6Q6P9H5 292 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 CDC37L1Q7L3B6 337 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 RALYLQ86SE5 291 aaKnown RBP7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 SGMS1Q86VZ5 419 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 MEIOBQ8N635 442 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 MAGEB6Q8N7X4 407 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 IGDCC4Q8TDY8 1250 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 CELF1Q92879 486 aaKnown RBP7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 PPP1R9BQ96SB3 815 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 LRRC2Q9BYS8 371 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 CNNM2Q9H8M5 875 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 SRP68Q9UHB9 627 aaKnown RBP7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 ANAPC4Q9UJX5 808 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 CFAP45Q9UL16 551 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 NID2Q14112 1375 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 MAST2Q6P0Q8 1798 aa7.05□□□□□ -1.28
VIPAS39-204ENST00000553576 VPS37CA5D8V6 355 aaPredicted RBP7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 TULP1O00294 542 aaPredicted RBP7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 JAK2O60674 1132 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 FGRP09769 529 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 PCP11498 1178 aaKnown RBP7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 FDPSP14324 419 aaKnown RBP7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 ADD1P35611 737 aaKnown RBP7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 NT5C2P49902 561 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 RCAN1P53805 252 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 ARID5BQ14865 1188 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 RNFT1Q5M7Z0 435 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 AKNAD1Q5T1N1 836 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 CCDC183Q5T5S1 534 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 KANK3Q6NY19 840 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 TMTC2Q8N394 836 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 FAM184AQ8NB25 1140 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 PRR7Q8TB68 274 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 STAG1Q8WVM7 1258 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 NACAP1Q9BZK3 213 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 KRT23Q9C075 422 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 GDPD2Q9HCC8 539 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 GPCPD1Q9NPB8 672 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 LRRC4BQ9NT99 713 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 LRP2BPQ9P2M1 347 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 RCOR1Q9UKL0 485 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 BRPF3Q9ULD4 1205 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 ANGEL1Q9UNK9 670 aaKnown RBP7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 LEMD3Q9Y2U8 911 aa7.04□□□□□ -1.28
VIPAS39-204ENST00000553576 TNRC6CQ9HCJ0 1690 aaKnown RBP7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 CDK5RAP2Q96SN8 1893 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 PTPDC1A2A3K4 754 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 KLRG2A4D1S0 409 aaPredicted RBP7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 SH2B2O14492 632 aaPredicted RBP7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 ARHGEF15O94989 841 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 MBD4O95243 580 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 APPP05067 770 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 HIBADHP31937 336 aaKnown RBP7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 GYG1P46976 350 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 NASPP49321 788 aaPredicted RBP7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 HAND2P61296 217 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 CCDC173Q0VFZ6 552 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 NFIXQ14938 502 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 PPP2R5BQ15173 497 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 CRY2Q49AN0 593 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 HS1BP3Q53T59 392 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 BICDL1Q6ZP65 573 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 CYB5R4Q7L1T6 521 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 CHST3Q7LGC8 479 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 TTC6Q86TZ1 520 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 AMIGO3Q86WK7 504 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 TBC1D10CQ8IV04 446 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 WHAMMQ8TF30 809 aa7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 LEO1Q8WVC0 666 aaPredicted RBP7.03□□□□□ -1.28
VIPAS39-204ENST00000553576 NANOS1Q8WY41 292 aaKnown RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms