RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 TREML2Q5T2D2 321 aa27.16■■□□□ 1.94
TDP1-206ENST00000553569 COL13A1Q5TAT6 717 aaPredicted RBP27.16■■□□□ 1.94
TDP1-206ENST00000553569 PROCA1Q8NCQ7 364 aaPredicted RBP27.16■■□□□ 1.94
TDP1-206ENST00000553569 ACER1Q8TDN7 264 aa27.16■■□□□ 1.94
TDP1-206ENST00000553569 TMOD4Q9NZQ9 345 aa27.16■■□□□ 1.94
TDP1-206ENST00000553569 AGTPBP1Q9UPW5 1226 aa27.16■■□□□ 1.94
TDP1-206ENST00000553569 SH3D19Q5HYK7 790 aa27.15■■□□□ 1.94
TDP1-206ENST00000553569 RUFY2Q8WXA3 655 aa27.15■■□□□ 1.94
TDP1-206ENST00000553569 ZNF287Q9HBT7 754 aa27.15■■□□□ 1.94
TDP1-206ENST00000553569 ZMYM6O95789 1325 aa27.15■■□□□ 1.94
TDP1-206ENST00000553569 RAD50Q92878 1312 aa27.15■■□□□ 1.94
TDP1-206ENST00000553569 ICA1Q05084 483 aa27.14■■□□□ 1.94
TDP1-206ENST00000553569 PDE4BQ07343 736 aa27.14■■□□□ 1.94
TDP1-206ENST00000553569 ZNF296Q8WUU4 475 aaPredicted RBP27.14■■□□□ 1.94
TDP1-206ENST00000553569 GREB1LQ9C091 1923 aaPredicted RBP27.14■■□□□ 1.93
TDP1-206ENST00000553569 C19orf81C9J6K1 198 aa27.13■■□□□ 1.93
TDP1-206ENST00000553569 HAND2P61296 217 aa27.13■■□□□ 1.93
TDP1-206ENST00000553569 BMP2KLQ5H9B9 411 aa27.13■■□□□ 1.93
TDP1-206ENST00000553569 USP17L2Q6R6M4 530 aa27.13■■□□□ 1.93
TDP1-206ENST00000553569 PARK7Q99497 189 aaKnown RBP27.13■■□□□ 1.93
TDP1-206ENST00000553569 LAMA4Q16363 1823 aa27.13■■□□□ 1.93
TDP1-206ENST00000553569 CYP2C8P10632 490 aa27.12■■□□□ 1.93
TDP1-206ENST00000553569 ZNF444Q8N0Y2 327 aaPredicted RBP27.12■■□□□ 1.93
TDP1-206ENST00000553569 FKTNO75072 461 aa27.11■■□□□ 1.93
TDP1-206ENST00000553569 ATP2B2Q01814 1243 aa27.11■■□□□ 1.93
TDP1-206ENST00000553569 NOM1Q5C9Z4 860 aaKnown RBP27.11■■□□□ 1.93
TDP1-206ENST00000553569 EMILIN3Q9NT22 766 aa27.11■■□□□ 1.93
TDP1-206ENST00000553569 ANAPC4Q9UJX5 808 aa27.11■■□□□ 1.93
TDP1-206ENST00000553569 SLC45A1Q9Y2W3 748 aa27.11■■□□□ 1.93
TDP1-206ENST00000553569 A0A1W2PRG0 241 aa27.1■■□□□ 1.93
TDP1-206ENST00000553569 TLR2O60603 784 aa27.1■■□□□ 1.93
TDP1-206ENST00000553569 USP14P54578 494 aa27.1■■□□□ 1.93
TDP1-206ENST00000553569 DSCC1Q9BVC3 393 aa27.1■■□□□ 1.93
TDP1-206ENST00000553569 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.1■■□□□ 1.93
TDP1-206ENST00000553569 KIAA1683Q9H0B3 1180 aa27.1■■□□□ 1.93
TDP1-206ENST00000553569 ARHGEF10LQ9HCE6 1279 aa27.1■■□□□ 1.93
TDP1-206ENST00000553569 INCENPQ9NQS7 918 aa27.1■■□□□ 1.93
TDP1-206ENST00000553569 CPA4Q9UI42 421 aa27.1■■□□□ 1.93
TDP1-206ENST00000553569 PABPC4Q13310 644 aaKnown RBP eCLIP27.09■■□□□ 1.93
TDP1-206ENST00000553569 FAM47AQ5JRC9 791 aa27.09■■□□□ 1.93
TDP1-206ENST00000553569 KANSL2Q9H9L4 492 aa27.09■■□□□ 1.93
TDP1-206ENST00000553569 PNMA3Q9UL41 463 aa27.09■■□□□ 1.93
TDP1-206ENST00000553569 DDX52Q9Y2R4 599 aaKnown RBP eCLIP27.09■■□□□ 1.93
TDP1-206ENST00000553569 TACC3Q9Y6A5 838 aa27.09■■□□□ 1.93
TDP1-206ENST00000553569 SGSM2O43147 1006 aa27.08■■□□□ 1.93
TDP1-206ENST00000553569 SMCR8Q8TEV9 937 aaPredicted RBP27.08■■□□□ 1.93
TDP1-206ENST00000553569 TOMM22Q9NS69 142 aa27.08■■□□□ 1.93
TDP1-206ENST00000553569 ADGRA2Q96PE1 1338 aa27.08■■□□□ 1.93
TDP1-206ENST00000553569 TSPY3P0CV98 308 aa27.07■■□□□ 1.92
TDP1-206ENST00000553569 TSPY8P0CW00 308 aa27.07■■□□□ 1.92
TDP1-206ENST00000553569 EEF2P13639 858 aaKnown RBP27.07■■□□□ 1.92
TDP1-206ENST00000553569 OSBPP22059 807 aa27.07■■□□□ 1.92
TDP1-206ENST00000553569 SIAH1Q8IUQ4 282 aa27.07■■□□□ 1.92
TDP1-206ENST00000553569 C12orf42Q96LP6 360 aa27.07■■□□□ 1.92
TDP1-206ENST00000553569 IRX3P78415 501 aaPredicted RBP27.06■■□□□ 1.92
TDP1-206ENST00000553569 TFAP4Q01664 338 aa27.06■■□□□ 1.92
TDP1-206ENST00000553569 SP3Q02447 781 aa27.06■■□□□ 1.92
TDP1-206ENST00000553569 RRP12Q5JTH9 1297 aaKnown RBP27.06■■□□□ 1.92
TDP1-206ENST00000553569 TBC1D10CQ8IV04 446 aa27.06■■□□□ 1.92
TDP1-206ENST00000553569 CD99L2Q8TCZ2 262 aa27.06■■□□□ 1.92
TDP1-206ENST00000553569 NBPF3Q9H094 633 aa27.06■■□□□ 1.92
TDP1-206ENST00000553569 ASCC2Q9H1I8 757 aaPredicted RBP27.06■■□□□ 1.92
TDP1-206ENST00000553569 SH2D4AQ9H788 454 aa27.06■■□□□ 1.92
TDP1-206ENST00000553569 PLIN4Q96Q06 1357 aa27.06■■□□□ 1.92
TDP1-206ENST00000553569 MYH4Q9Y623 1939 aa27.06■■□□□ 1.92
TDP1-206ENST00000553569 ZNF213O14771 459 aa27.05■■□□□ 1.92
TDP1-206ENST00000553569 VCAM1P19320 739 aa27.05■■□□□ 1.92
TDP1-206ENST00000553569 TSPY2A6NKD2 308 aa27.04■■□□□ 1.92
TDP1-206ENST00000553569 RANBP6O60518 1105 aaKnown RBP27.04■■□□□ 1.92
TDP1-206ENST00000553569 PTH1RQ03431 593 aa27.04■■□□□ 1.92
TDP1-206ENST00000553569 C17orf99Q6UX52 265 aa27.04■■□□□ 1.92
TDP1-206ENST00000553569 NEDD1Q8NHV4 660 aa27.04■■□□□ 1.92
TDP1-206ENST00000553569 CEP95Q96GE4 821 aa27.04■■□□□ 1.92
TDP1-206ENST00000553569 CTNNA3Q9UI47 895 aa27.04■■□□□ 1.92
TDP1-206ENST00000553569 TMX2Q9Y320 296 aa27.04■■□□□ 1.92
TDP1-206ENST00000553569 ZSWIM8A7E2V4 1837 aa27.04■■□□□ 1.92
TDP1-206ENST00000553569 IGKV6D-41A0A0C4DH26 115 aa27.03■■□□□ 1.92
TDP1-206ENST00000553569 ORC4O43929 436 aa27.03■■□□□ 1.92
TDP1-206ENST00000553569 ECM2O94769 699 aaPredicted RBP27.03■■□□□ 1.92
TDP1-206ENST00000553569 HOXA7P31268 230 aaPredicted RBP27.03■■□□□ 1.92
TDP1-206ENST00000553569 IMMTQ16891 758 aaKnown RBP27.03■■□□□ 1.92
TDP1-206ENST00000553569 AKNAD1Q5T1N1 836 aa27.03■■□□□ 1.92
TDP1-206ENST00000553569 ERO1AQ96HE7 468 aa27.03■■□□□ 1.92
TDP1-206ENST00000553569 RPAP3Q9H6T3 665 aaPredicted RBP27.03■■□□□ 1.92
TDP1-206ENST00000553569 RAD21O60216 631 aa27.02■■□□□ 1.92
TDP1-206ENST00000553569 KIAA1755Q5JYT7 1200 aa27.02■■□□□ 1.92
TDP1-206ENST00000553569 MFSD6Q6ZSS7 791 aa27.02■■□□□ 1.92
TDP1-206ENST00000553569 CTU1Q7Z7A3 348 aaKnown RBP27.02■■□□□ 1.92
TDP1-206ENST00000553569 TNS4Q8IZW8 715 aa27.02■■□□□ 1.92
TDP1-206ENST00000553569 SPICE1Q8N0Z3 855 aa27.02■■□□□ 1.92
TDP1-206ENST00000553569 STAG1Q8WVM7 1258 aa27.02■■□□□ 1.92
TDP1-206ENST00000553569 ESYT1Q9BSJ8 1104 aa27.02■■□□□ 1.92
TDP1-206ENST00000553569 VCPKMTQ9H867 229 aa27.02■■□□□ 1.92
TDP1-206ENST00000553569 NEDD4P46934 1319 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 USP17L15C9J2P7 530 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 USP17L13C9JLJ4 530 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 USP17L11C9JVI0 530 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 USP17L18D6R9N7 530 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 USP17L22D6RA61 530 aa27.01■■□□□ 1.91
TDP1-206ENST00000553569 USP17L17D6RBQ6 530 aa27.01■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms