RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 IKBKEQ14164 716 aa7.72□□□□□ -1.17
SCAF11-213ENST00000550629 CCNJLQ8IV13 435 aa7.72□□□□□ -1.17
SCAF11-213ENST00000550629 DMRTB1Q96MA1 342 aa7.72□□□□□ -1.17
SCAF11-213ENST00000550629 TCF12Q99081 682 aa7.72□□□□□ -1.17
SCAF11-213ENST00000550629 LIN7BQ9HAP6 207 aa7.72□□□□□ -1.17
SCAF11-213ENST00000550629 NPHS2Q9NP85 383 aa7.72□□□□□ -1.17
SCAF11-213ENST00000550629 DCTN4Q9UJW0 460 aa7.72□□□□□ -1.17
SCAF11-213ENST00000550629 RAXQ9Y2V3 346 aa7.72□□□□□ -1.17
SCAF11-213ENST00000550629 PHRF1Q9P1Y6 1649 aaKnown RBP7.71□□□□□ -1.17
SCAF11-213ENST00000550629 SMG6Q86US8 1419 aaKnown RBP7.71□□□□□ -1.17
SCAF11-213ENST00000550629 A0A096LPE4 126 aa7.71□□□□□ -1.18
SCAF11-213ENST00000550629 A0A1W2PPZ6 126 aa7.71□□□□□ -1.18
SCAF11-213ENST00000550629 EIF1AYO14602 144 aaKnown RBP7.71□□□□□ -1.18
SCAF11-213ENST00000550629 ESRRAP11474 423 aaPredicted RBP7.71□□□□□ -1.18
SCAF11-213ENST00000550629 GRIA4P48058 902 aa7.71□□□□□ -1.18
SCAF11-213ENST00000550629 CD97P48960 835 aa7.71□□□□□ -1.18
SCAF11-213ENST00000550629 KCNA1Q09470 495 aa7.71□□□□□ -1.18
SCAF11-213ENST00000550629 SPRED3Q2MJR0 410 aa7.71□□□□□ -1.18
SCAF11-213ENST00000550629 CC2D1BQ5T0F9 858 aaKnown RBP7.71□□□□□ -1.18
SCAF11-213ENST00000550629 KIAA0319Q5VV43 1072 aa7.71□□□□□ -1.18
SCAF11-213ENST00000550629 NUTM2GQ5VZR2 741 aa7.71□□□□□ -1.18
SCAF11-213ENST00000550629 DIEXFQ68CQ4 756 aaKnown RBP7.71□□□□□ -1.18
SCAF11-213ENST00000550629 TMC7Q7Z402 723 aa7.71□□□□□ -1.18
SCAF11-213ENST00000550629 ALKBH8Q96BT7 664 aaKnown RBP7.71□□□□□ -1.18
SCAF11-213ENST00000550629 UBL7Q96S82 380 aaPredicted RBP7.71□□□□□ -1.18
SCAF11-213ENST00000550629 TRAIPQ9BWF2 469 aa7.71□□□□□ -1.18
SCAF11-213ENST00000550629 DNAJC25Q9H1X3 360 aa7.71□□□□□ -1.18
SCAF11-213ENST00000550629 PRKRIP1Q9H875 184 aaPredicted RBP7.71□□□□□ -1.18
SCAF11-213ENST00000550629 RTL1A6NKG5 1358 aa7.71□□□□□ -1.18
SCAF11-213ENST00000550629 ABCA3Q99758 1704 aa7.7□□□□□ -1.18
SCAF11-213ENST00000550629 DHX15O43143 795 aaKnown RBP7.7□□□□□ -1.18
SCAF11-213ENST00000550629 ANP32CO43423 234 aa7.7□□□□□ -1.18
SCAF11-213ENST00000550629 CCDC74AQ96AQ1 378 aa7.7□□□□□ -1.18
SCAF11-213ENST00000550629 CSRNP1Q96S65 589 aa7.7□□□□□ -1.18
SCAF11-213ENST00000550629 CEP41Q9BYV8 373 aa7.7□□□□□ -1.18
SCAF11-213ENST00000550629 STOML1Q9UBI4 398 aa7.7□□□□□ -1.18
SCAF11-213ENST00000550629 INSRP06213 1382 aa7.7□□□□□ -1.18
SCAF11-213ENST00000550629 CDK12Q9NYV4 1490 aaPredicted RBP7.69□□□□□ -1.18
SCAF11-213ENST00000550629 IGLV1-40P01703 118 aa7.69□□□□□ -1.18
SCAF11-213ENST00000550629 MAPK1P28482 360 aa7.69□□□□□ -1.18
SCAF11-213ENST00000550629 ARHGEF25Q86VW2 580 aa7.69□□□□□ -1.18
SCAF11-213ENST00000550629 EHD4Q9H223 541 aa7.69□□□□□ -1.18
SCAF11-213ENST00000550629 MYBBP1AQ9BQG0 1328 aaKnown RBP7.69□□□□□ -1.18
SCAF11-213ENST00000550629 BLMP54132 1417 aaPredicted RBP7.69□□□□□ -1.18
SCAF11-213ENST00000550629 PAX4O43316 350 aa7.68□□□□□ -1.18
SCAF11-213ENST00000550629 PPP2R1AP30153 589 aa7.68□□□□□ -1.18
SCAF11-213ENST00000550629 IRAK1P51617 712 aa7.68□□□□□ -1.18
SCAF11-213ENST00000550629 UTP4Q969X6 686 aaKnown RBP7.68□□□□□ -1.18
SCAF11-213ENST00000550629 SOX17Q9H6I2 414 aaPredicted RBP7.68□□□□□ -1.18
SCAF11-213ENST00000550629 POLKQ9UBT6 870 aa7.68□□□□□ -1.18
SCAF11-213ENST00000550629 MAP3K19Q56UN5 1328 aa7.68□□□□□ -1.18
SCAF11-213ENST00000550629 FLT4P35916 1363 aa7.68□□□□□ -1.18
SCAF11-213ENST00000550629 KIAA0232Q92628 1395 aa7.68□□□□□ -1.18
SCAF11-213ENST00000550629 YBX3P16989 372 aaKnown RBP eCLIP7.67□□□□□ -1.18
SCAF11-213ENST00000550629 TNNT2P45379 298 aaPredicted RBP7.67□□□□□ -1.18
SCAF11-213ENST00000550629 PCDH1Q08174 1060 aa7.67□□□□□ -1.18
SCAF11-213ENST00000550629 ZNF423Q2M1K9 1284 aa7.67□□□□□ -1.18
SCAF11-213ENST00000550629 EPS8L3Q8TE67 593 aaKnown RBP7.67□□□□□ -1.18
SCAF11-213ENST00000550629 IP6K1Q92551 441 aa7.67□□□□□ -1.18
SCAF11-213ENST00000550629 CFAP53Q96M91 514 aa7.67□□□□□ -1.18
SCAF11-213ENST00000550629 RUSC1Q9BVN2 902 aa7.67□□□□□ -1.18
SCAF11-213ENST00000550629 CLEC4MQ9H2X3 399 aaPredicted RBP7.67□□□□□ -1.18
SCAF11-213ENST00000550629 PRDM11Q9NQV5 511 aa7.67□□□□□ -1.18
SCAF11-213ENST00000550629 COL14A1Q05707 1796 aaKnown RBP7.66□□□□□ -1.18
SCAF11-213ENST00000550629 GADD45BO75293 160 aaPredicted RBP7.66□□□□□ -1.18
SCAF11-213ENST00000550629 TGFB1P01137 390 aa7.66□□□□□ -1.18
SCAF11-213ENST00000550629 AMPHP49418 695 aa7.66□□□□□ -1.18
SCAF11-213ENST00000550629 MTHFSP49914 203 aa7.66□□□□□ -1.18
SCAF11-213ENST00000550629 ZC3H6P61129 1189 aaKnown RBP7.66□□□□□ -1.18
SCAF11-213ENST00000550629 GSTM4Q03013 218 aa7.66□□□□□ -1.18
SCAF11-213ENST00000550629 DSC3Q14574 896 aa7.66□□□□□ -1.18
SCAF11-213ENST00000550629 UVSSAQ2YD98 709 aa7.66□□□□□ -1.18
SCAF11-213ENST00000550629 ARMC10Q8N2F6 343 aa7.66□□□□□ -1.18
SCAF11-213ENST00000550629 FAM46AQ96IP4 442 aaKnown RBP7.66□□□□□ -1.18
SCAF11-213ENST00000550629 USP26Q9BXU7 913 aa7.66□□□□□ -1.18
SCAF11-213ENST00000550629 RNF208Q9H0X6 261 aa7.66□□□□□ -1.18
SCAF11-213ENST00000550629 LRP6O75581 1613 aa7.66□□□□□ -1.18
SCAF11-213ENST00000550629 LMO7Q8WWI1 1683 aa7.66□□□□□ -1.18
SCAF11-213ENST00000550629 LOC100289279A0A1B0GTE1 492 aa7.65□□□□□ -1.18
SCAF11-213ENST00000550629 FAM83GA6ND36 823 aa7.65□□□□□ -1.18
SCAF11-213ENST00000550629 KIAA1324LA8MWY0 1029 aaPredicted RBP7.65□□□□□ -1.18
SCAF11-213ENST00000550629 CCER2I3L3R5 266 aa7.65□□□□□ -1.18
SCAF11-213ENST00000550629 HOXC9P31274 260 aa7.65□□□□□ -1.18
SCAF11-213ENST00000550629 GRIK1P39086 918 aa7.65□□□□□ -1.18
SCAF11-213ENST00000550629 PLCB3Q01970 1234 aa7.65□□□□□ -1.18
SCAF11-213ENST00000550629 RRS1Q15050 365 aaKnown RBP7.65□□□□□ -1.18
SCAF11-213ENST00000550629 ARID1BQ8NFD5 2236 aaPredicted RBP7.65□□□□□ -1.18
SCAF11-213ENST00000550629 ABCB6Q9NP58 842 aa7.65□□□□□ -1.18
SCAF11-213ENST00000550629 LTN1O94822 1766 aa7.64□□□□□ -1.19
SCAF11-213ENST00000550629 COL18A1P39060 1754 aa7.64□□□□□ -1.19
SCAF11-213ENST00000550629 PEAK1Q9H792 1746 aa7.64□□□□□ -1.19
SCAF11-213ENST00000550629 NWD2Q9ULI1 1742 aa7.64□□□□□ -1.19
SCAF11-213ENST00000550629 SLIT2O94813 1529 aa7.64□□□□□ -1.19
SCAF11-213ENST00000550629 COL3A1P02461 1466 aaPredicted RBP7.64□□□□□ -1.19
SCAF11-213ENST00000550629 PLEKHG2Q9H7P9 1386 aa7.64□□□□□ -1.19
SCAF11-213ENST00000550629 MEGF11A6BM72 1044 aa7.64□□□□□ -1.19
SCAF11-213ENST00000550629 PPM1GO15355 546 aaPredicted RBP7.64□□□□□ -1.19
SCAF11-213ENST00000550629 TREHO43280 583 aa7.64□□□□□ -1.19
SCAF11-213ENST00000550629 DLGAP3O95886 979 aa7.64□□□□□ -1.19
SCAF11-213ENST00000550629 ITPKAP23677 461 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms