RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 MYPNQ86TC9 1320 aa9.39□□□□□ -0.91
NEK3-201ENST00000550331 FARP2O94887 1054 aaPredicted RBP9.39□□□□□ -0.91
NEK3-201ENST00000550331 LDHCP07864 332 aa9.39□□□□□ -0.91
NEK3-201ENST00000550331 CYP2C8P10632 490 aa9.39□□□□□ -0.91
NEK3-201ENST00000550331 ARID4AP29374 1257 aaPredicted RBP9.39□□□□□ -0.91
NEK3-201ENST00000550331 FCGRTP55899 365 aa9.39□□□□□ -0.91
NEK3-201ENST00000550331 RHBDL3P58872 404 aa9.39□□□□□ -0.91
NEK3-201ENST00000550331 UBXN2AP68543 259 aa9.39□□□□□ -0.91
NEK3-201ENST00000550331 PICALMQ13492 652 aa9.39□□□□□ -0.91
NEK3-201ENST00000550331 SPATA5Q8NB90 893 aa9.39□□□□□ -0.91
NEK3-201ENST00000550331 NEUROD6Q96NK8 337 aa9.39□□□□□ -0.91
NEK3-201ENST00000550331 EPAS1Q99814 870 aa9.39□□□□□ -0.91
NEK3-201ENST00000550331 DDX4Q9NQI0 724 aaKnown RBP9.39□□□□□ -0.91
NEK3-201ENST00000550331 AAASQ9NRG9 546 aa9.39□□□□□ -0.91
NEK3-201ENST00000550331 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.39□□□□□ -0.91
NEK3-201ENST00000550331 UQCRFS1P1P0C7P4 283 aa9.38□□□□□ -0.91
NEK3-201ENST00000550331 NFX1Q12986 1120 aaKnown RBP9.38□□□□□ -0.91
NEK3-201ENST00000550331 G3BP1Q13283 466 aaKnown RBP eCLIP9.38□□□□□ -0.91
NEK3-201ENST00000550331 GORABQ5T7V8 394 aa9.38□□□□□ -0.91
NEK3-201ENST00000550331 ZNF598Q86UK7 904 aaKnown RBP9.38□□□□□ -0.91
NEK3-201ENST00000550331 ZNF384Q8TF68 577 aa9.38□□□□□ -0.91
NEK3-201ENST00000550331 U2AF1L4Q8WU68 220 aaKnown RBP9.38□□□□□ -0.91
NEK3-201ENST00000550331 NSUN4Q96CB9 384 aaKnown RBP9.38□□□□□ -0.91
NEK3-201ENST00000550331 TBC1D2Q9BYX2 928 aa9.38□□□□□ -0.91
NEK3-201ENST00000550331 OSBPL5Q9H0X9 879 aaPredicted RBP9.38□□□□□ -0.91
NEK3-201ENST00000550331 STAP2Q9UGK3 403 aa9.38□□□□□ -0.91
NEK3-201ENST00000550331 AGTPBP1Q9UPW5 1226 aa9.38□□□□□ -0.91
NEK3-201ENST00000550331 DOCK2Q92608 1830 aa9.38□□□□□ -0.91
NEK3-201ENST00000550331 PNMA6EA0A0J9YXQ4 647 aa9.37□□□□□ -0.91
NEK3-201ENST00000550331 TRIM75PA6NK02 468 aa9.37□□□□□ -0.91
NEK3-201ENST00000550331 IGSF3O75054 1194 aa9.37□□□□□ -0.91
NEK3-201ENST00000550331 MCAMP43121 646 aa9.37□□□□□ -0.91
NEK3-201ENST00000550331 PRKCZQ05513 592 aa9.37□□□□□ -0.91
NEK3-201ENST00000550331 PI16Q6UXB8 463 aa9.37□□□□□ -0.91
NEK3-201ENST00000550331 GADL1Q6ZQY3 521 aa9.37□□□□□ -0.91
NEK3-201ENST00000550331 PROCA1Q8NCQ7 364 aaPredicted RBP9.37□□□□□ -0.91
NEK3-201ENST00000550331 SMCR8Q8TEV9 937 aaPredicted RBP9.37□□□□□ -0.91
NEK3-201ENST00000550331 FRAT1Q92837 279 aaPredicted RBP9.37□□□□□ -0.91
NEK3-201ENST00000550331 UNC93B1Q9H1C4 597 aa9.37□□□□□ -0.91
NEK3-201ENST00000550331 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.37□□□□□ -0.91
NEK3-201ENST00000550331 GPR108Q9NPR9 543 aa9.37□□□□□ -0.91
NEK3-201ENST00000550331 RTN4Q9NQC3 1192 aaKnown RBP9.37□□□□□ -0.91
NEK3-201ENST00000550331 RAI14Q9P0K7 980 aa9.37□□□□□ -0.91
NEK3-201ENST00000550331 DOCK3Q8IZD9 2030 aa9.36□□□□□ -0.91
NEK3-201ENST00000550331 TNPO2O14787 897 aaKnown RBP9.36□□□□□ -0.91
NEK3-201ENST00000550331 ST8SIA5O15466 376 aa9.36□□□□□ -0.91
NEK3-201ENST00000550331 BCAR3O75815 825 aa9.36□□□□□ -0.91
NEK3-201ENST00000550331 SGPL1O95470 568 aa9.36□□□□□ -0.91
NEK3-201ENST00000550331 SLURP2P0DP57 97 aa9.36□□□□□ -0.91
NEK3-201ENST00000550331 CAPN2P17655 700 aa9.36□□□□□ -0.91
NEK3-201ENST00000550331 ZKSCAN2Q63HK3 967 aa9.36□□□□□ -0.91
NEK3-201ENST00000550331 TBC1D9Q6ZT07 1266 aa9.36□□□□□ -0.91
NEK3-201ENST00000550331 CLUAP1Q96AJ1 413 aa9.36□□□□□ -0.91
NEK3-201ENST00000550331 NOL10Q9BSC4 688 aaKnown RBP9.36□□□□□ -0.91
NEK3-201ENST00000550331 DHX36Q9H2U1 1008 aaKnown RBP9.36□□□□□ -0.91
NEK3-201ENST00000550331 LRP2BPQ9P2M1 347 aa9.36□□□□□ -0.91
NEK3-201ENST00000550331 HERC5Q9UII4 1024 aaKnown RBP9.36□□□□□ -0.91
NEK3-201ENST00000550331 PNMA3Q9UL41 463 aa9.36□□□□□ -0.91
NEK3-201ENST00000550331 TNNQ9UQP3 1299 aa9.36□□□□□ -0.91
NEK3-201ENST00000550331 UNC80Q8N2C7 3258 aa9.36□□□□□ -0.91
NEK3-201ENST00000550331 FAM196BA6NMK8 535 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 BAG3O95817 575 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 TFRCP02786 760 aaKnown RBP9.35□□□□□ -0.91
NEK3-201ENST00000550331 FLT3LGP49771 235 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 PABPC4Q13310 644 aaKnown RBP eCLIP9.35□□□□□ -0.91
NEK3-201ENST00000550331 IRF5Q13568 498 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 TNNI3KQ59H18 835 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 CCDC158Q5M9N0 1113 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 TTC39AQ5SRH9 613 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 TEX11Q8IYF3 940 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 TMEM57Q8N5G2 664 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 DEFB123Q8N688 67 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 ZNF280CQ8ND82 737 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 SSH3Q8TE77 659 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 PXYLP1Q8TE99 480 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 ZNF512BQ96KM6 892 aaPredicted RBP9.35□□□□□ -0.91
NEK3-201ENST00000550331 PI4KBQ9UBF8 816 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 GABRQQ9UN88 632 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 FPGT-TNNI3KV9GXZ4 949 aa9.35□□□□□ -0.91
NEK3-201ENST00000550331 DOCK1Q14185 1865 aa9.34□□□□□ -0.91
NEK3-201ENST00000550331 ADCY3O60266 1144 aa9.34□□□□□ -0.91
NEK3-201ENST00000550331 CAP2P40123 477 aa9.34□□□□□ -0.91
NEK3-201ENST00000550331 GCLCP48506 637 aaPredicted RBP9.34□□□□□ -0.91
NEK3-201ENST00000550331 SPP2Q13103 211 aa9.34□□□□□ -0.91
NEK3-201ENST00000550331 FAM110CQ1W6H9 321 aa9.34□□□□□ -0.91
NEK3-201ENST00000550331 SH3D19Q5HYK7 790 aa9.34□□□□□ -0.91
NEK3-201ENST00000550331 TREML2Q5T2D2 321 aa9.34□□□□□ -0.91
NEK3-201ENST00000550331 NAA16Q6N069 864 aaPredicted RBP9.34□□□□□ -0.91
NEK3-201ENST00000550331 CCDC84Q86UT8 332 aaPredicted RBP9.34□□□□□ -0.91
NEK3-201ENST00000550331 METTL16Q86W50 562 aaKnown RBP9.34□□□□□ -0.91
NEK3-201ENST00000550331 ANKRD13CQ8N6S4 541 aa9.34□□□□□ -0.91
NEK3-201ENST00000550331 SH3RF3Q8TEJ3 882 aaPredicted RBP9.34□□□□□ -0.91
NEK3-201ENST00000550331 AS3MTQ9HBK9 375 aa9.34□□□□□ -0.91
NEK3-201ENST00000550331 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.34□□□□□ -0.91
NEK3-201ENST00000550331 MAST2Q6P0Q8 1798 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 USP17L5A8MUK1 530 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 INHAP05111 366 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 ASNSP08243 561 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 ELNP15502 786 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 ATP8B2P98198 1209 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms